BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0741900 Os01g0741900|AK068600
(335 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0741900 Similar to Auxin-responsive protein IAA26 (Ind... 590 e-169
Os05g0523300 Similar to IAA8 (Fragment) 308 5e-84
Os02g0228900 Similar to Auxin-responsive protein IAA18 (Ind... 179 2e-45
Os01g0190300 Similar to Auxin-responsive protein IAA26 (Ind... 138 6e-33
Os08g0109400 AUX/IAA protein family protein 119 3e-27
Os02g0817600 AUX/IAA protein family protein 109 3e-24
Os03g0633500 Similar to Auxin-responsive protein (Aux/IAA) ... 108 4e-24
Os12g0601300 Similar to Auxin-responsive protein (Aux/IAA) ... 108 5e-24
Os03g0742900 Aux /IAA protein 107 1e-23
Os06g0355300 106 3e-23
Os05g0559400 Similar to IAA11 (Fragment) 103 2e-22
Os01g0231000 Similar to Auxin-responsive protein (Aux/IAA) ... 101 9e-22
Os01g0675700 Similar to Auxin-responsive protein IAA14 (Ind... 100 3e-21
Os06g0335500 AUX/IAA protein family protein 100 3e-21
Os06g0597000 Similar to Auxin responsive protein IAA-Re 97 1e-20
Os01g0178500 Similar to Auxin-responsive protein (Aux/IAA) ... 97 2e-20
Os05g0178600 Similar to Auxin-responsive protein (Aux/IAA) ... 95 6e-20
Os07g0182400 AUX/IAA protein family protein 92 8e-19
Os03g0633800 Similar to IAA6 (Fragment) 86 6e-17
Os12g0601400 Similar to Auxin-responsive protein (Aux/IAA) ... 85 6e-17
Os09g0527700 Similar to Auxin-induced protein IAA4 83 3e-16
Os03g0797800 AUX/IAA protein family protein 78 1e-14
Os02g0723400 AUX/IAA protein family protein 77 2e-14
Os11g0221300 AUX/IAA protein family protein 67 2e-11
>Os01g0741900 Similar to Auxin-responsive protein IAA26 (Indoleacetic
acid-induced protein 26) (Phytochrome-associated protein
1)
Length = 335
Score = 590 bits (1522), Expect = e-169, Method: Compositional matrix adjust.
Identities = 293/335 (87%), Positives = 293/335 (87%)
Query: 1 MEEGSNKREGLPPQLLDLIPDEKEWKLREALGLGRSRNAGFXXXXXXXXXXXXXXPGFIE 60
MEEGSNKREGLPPQLLDLIPDEKEWKLREALGLGRSRNAGF PGFIE
Sbjct: 1 MEEGSNKREGLPPQLLDLIPDEKEWKLREALGLGRSRNAGFDGEEDKKLDLKLGLPGFIE 60
Query: 61 DDEAETLRDYRLQQESPSLSLSFFPKHSKXXXXXXXXXGAKRGFIDTVEDKTEGYNDQKQ 120
DDEAETLRDYRLQQESPSLSLSFFPKHSK GAKRGFIDTVEDKTEGYNDQKQ
Sbjct: 61 DDEAETLRDYRLQQESPSLSLSFFPKHSKTTSSTTTTTGAKRGFIDTVEDKTEGYNDQKQ 120
Query: 121 QARAGCGKELAVEEMIAAVSERKKGCCXXXXXXXXXXXXXXRNRPQTQGRGAAAPVVGWP 180
QARAGCGKELAVEEMIAAVSERKKGCC RNRPQTQGRGAAAPVVGWP
Sbjct: 121 QARAGCGKELAVEEMIAAVSERKKGCCPPPPPPHGAPATPARNRPQTQGRGAAAPVVGWP 180
Query: 181 PIRSFRRNLAXXXXXKHSPEPQNDNANAKVTLTCKKNPLVKINMDGIPIGRKIDLAAYNS 240
PIRSFRRNLA KHSPEPQNDNANAKVTLTCKKNPLVKINMDGIPIGRKIDLAAYNS
Sbjct: 181 PIRSFRRNLASSSSSKHSPEPQNDNANAKVTLTCKKNPLVKINMDGIPIGRKIDLAAYNS 240
Query: 241 YDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSGEYTLVYEDSEGDRML 300
YDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSGEYTLVYEDSEGDRML
Sbjct: 241 YDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSGEYTLVYEDSEGDRML 300
Query: 301 VGDVPWKVFVSTAKRLRVLRSSELSHTLIGATARV 335
VGDVPWKVFVSTAKRLRVLRSSELSHTLIGATARV
Sbjct: 301 VGDVPWKVFVSTAKRLRVLRSSELSHTLIGATARV 335
>Os05g0523300 Similar to IAA8 (Fragment)
Length = 327
Score = 308 bits (788), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 174/329 (52%), Positives = 205/329 (62%), Gaps = 15/329 (4%)
Query: 7 KREGLPPQLLDLIPDEKEWKLREALGLGRSRNAGFXXXXXXXXXXXXXXPGFIEDDEAET 66
K +GLPP LL LIPD +EWK++EA G G SRN PG +++ A
Sbjct: 6 KDKGLPPTLLHLIPDGREWKVKEADGEG-SRNTNLDADEDKELELKLGLPGVQQEERAAD 64
Query: 67 LRDYRLQQE---SPSLSLSFFPKHSKXXXXXXXXXGAKRGFIDTVEDKTEGYNDQKQQAR 123
R+ QQ+ S S+ FP HSK GAKRGF V EGYN Q +
Sbjct: 65 SREKIQQQQRESSSEPSIGCFPTHSKPTTSIGTT-GAKRGFFAIVGATLEGYN-QSHRDT 122
Query: 124 AGCGKELAV-EEMIAAVSERKKGCCXXXXXXXXXXXXXXRNRPQTQGRGAAAPVVGWPPI 182
CGKEL + +E +A ERKKGCC + QGRGA PVVGWPPI
Sbjct: 123 EECGKELTLGDENMAG--ERKKGCCPSPPCSAAA------HSSNPQGRGAIPPVVGWPPI 174
Query: 183 RSFRRNLAXXXXXKHSPEPQNDNANAKVTLTCKKNPLVKINMDGIPIGRKIDLAAYNSYD 242
RSFRRNL K SPE QND A+ K CKK PLVKINMDGIPIGRK+DL Y+SY
Sbjct: 175 RSFRRNLTNGSSFKQSPERQNDEADDKAKPICKKRPLVKINMDGIPIGRKVDLQIYDSYQ 234
Query: 243 GLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSGEYTLVYEDSEGDRMLVG 302
LSSAV++LF GFL+AQKD + A+ +QGA+DKIF LLDG+G YTLVYED++GDRML G
Sbjct: 235 KLSSAVEELFRGFLEAQKDLSCAESGEQGAEDKIFSGLLDGTGVYTLVYEDNDGDRMLAG 294
Query: 303 DVPWKVFVSTAKRLRVLRSSELSHTLIGA 331
D+PWKVFVST KRLRV+R SEL H +IGA
Sbjct: 295 DIPWKVFVSTVKRLRVMRRSELPHDMIGA 323
>Os02g0228900 Similar to Auxin-responsive protein IAA18 (Indoleacetic
acid-induced protein 18)
Length = 300
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 92/162 (56%), Positives = 113/162 (69%), Gaps = 3/162 (1%)
Query: 168 QGRGAAAPVVGWPPIRSFRRNLAXXXXXKHSPEPQNDNANAKVTLTCKKNPLVKINMDGI 227
Q R + PVVGWPP+R+FRRNLA K S E QN AK K+ P +KINMDG+
Sbjct: 131 QTRSPSTPVVGWPPVRTFRRNLATSS--KASLELQNGKKAAKAE-EIKRAPFIKINMDGV 187
Query: 228 PIGRKIDLAAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSGEY 287
PIGRKIDL A++SY+ LS AV +LF G L AQ+D A +D LLDG+GEY
Sbjct: 188 PIGRKIDLNAFDSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDVAISGLLDGTGEY 247
Query: 288 TLVYEDSEGDRMLVGDVPWKVFVSTAKRLRVLRSSELSHTLI 329
TLVYED EGD++LVGDVPW +FVS+ KRLRVL++S+LS +LI
Sbjct: 248 TLVYEDYEGDKVLVGDVPWGMFVSSVKRLRVLKTSDLSSSLI 289
>Os01g0190300 Similar to Auxin-responsive protein IAA26 (Indoleacetic
acid-induced protein 26) (Phytochrome-associated protein
1)
Length = 238
Score = 138 bits (348), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 94/152 (61%), Gaps = 12/152 (7%)
Query: 179 WPPIRSFRRNLAXXXXXKHSPEPQN------DNANAKVTLTCKKNPLVKINMDGIPIGRK 232
WPP+RSFRRNLA P + A +K VKINMDG+PIGRK
Sbjct: 74 WPPVRSFRRNLASSSSSSSKQAPPPPSSSPQNGDKASKDGGAEKGMFVKINMDGVPIGRK 133
Query: 233 IDLAAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSGEYTLVYE 292
+DLAAY Y LS+AV +LF G L AQ + + A + + G GEYTLVYE
Sbjct: 134 VDLAAYGGYAQLSAAVDKLFRGLLAAQSAAADGEADAAAAGEMV------GGGEYTLVYE 187
Query: 293 DSEGDRMLVGDVPWKVFVSTAKRLRVLRSSEL 324
D EGDRMLVGDVPW++F++TAKRLRVL+SS+L
Sbjct: 188 DDEGDRMLVGDVPWQMFIATAKRLRVLKSSDL 219
>Os08g0109400 AUX/IAA protein family protein
Length = 246
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 102/171 (59%), Gaps = 35/171 (20%)
Query: 166 QTQGRGAA-APVVGWPPIRSFRRNLAXXXXXKHSPEPQN-DNANAKVTLTCKK------- 216
Q + R A+ A +VGWPP+R+FR+NL+ +P+P + D+ KV L +
Sbjct: 82 QRENRAASSAQLVGWPPVRAFRKNLS-------TPKPADADDLMNKVKLCSDEGHGSRCA 134
Query: 217 --------NPLVKINMDGIPIGRKIDLAAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIA 268
VK+N++G +GRKIDL A+ SYD LS A++ +FHGFL + IA
Sbjct: 135 AQERRSSSTMFVKVNLEGYAVGRKIDLKAHRSYDSLSQALQSMFHGFL-------SDGIA 187
Query: 269 QQGADDKIFYQLLDGSGE-YTLVYEDSEGDRMLVGDVPWKVFVSTAKRLRV 318
+ D Q+ +GS + Y LVYED+EGDRMLVGDVPW++F+++ KRL +
Sbjct: 188 TR---DNELQQMEEGSKKRYVLVYEDNEGDRMLVGDVPWELFIASVKRLYI 235
>Os02g0817600 AUX/IAA protein family protein
Length = 280
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 84/158 (53%), Gaps = 20/158 (12%)
Query: 176 VVGWPPIRSFRRNLAXXXXXKHSPEPQNDNANAKVTLTCKKNP----------LVKINMD 225
VVGWPPIR FR N +++ E + K VK+NMD
Sbjct: 111 VVGWPPIRQFRMNSLFNQAKENTSETDTKKTATNESDVQKDKEEGEKKGRVAGWVKVNMD 170
Query: 226 GIPIGRKIDLAAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSG 285
G IGRK+DL A+ SY L+ A++ +F T I + + +LLD S
Sbjct: 171 GEVIGRKVDLNAHRSYKTLALALELMF----------TKPSIGLCASHNTNSLKLLDNSA 220
Query: 286 EYTLVYEDSEGDRMLVGDVPWKVFVSTAKRLRVLRSSE 323
EY L YED +GD MLVGDVPW++FVS+ KRLR++R+S+
Sbjct: 221 EYQLTYEDRDGDWMLVGDVPWEMFVSSVKRLRIMRTSD 258
>Os03g0633500 Similar to Auxin-responsive protein (Aux/IAA) (Fragment)
Length = 241
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 87/161 (54%), Gaps = 32/161 (19%)
Query: 170 RGAAAPVVGWPPIRSFRRNLAXXXXXKHSPEPQNDNANAKVTLTCKKNPLVKINMDGIPI 229
R A VVGWPP+RSFR+N+ + CK LVK++MDG P
Sbjct: 95 RAPKAQVVGWPPVRSFRKNV--------------------LAEKCKAAALVKVSMDGAPY 134
Query: 230 GRKIDLAAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSGEYTL 289
RKID+A Y SY LS A + +F F K ++ Q+ + +K+ L EY
Sbjct: 135 LRKIDVAMYKSYPELSMAFQNMFTSFTIG-KCGSHQQLKES---NKLRDDL-----EYVP 185
Query: 290 VYEDSEGDRMLVGDVPWKVFVSTAKRLRVLRSSE---LSHT 327
YED +GD MLVGDVPW++FV + KRLR+++ SE L HT
Sbjct: 186 TYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLGHT 226
>Os12g0601300 Similar to Auxin-responsive protein (Aux/IAA) (Fragment)
Length = 277
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 83/154 (53%), Gaps = 7/154 (4%)
Query: 170 RGAAAPVVGWPPIRSFRRNLAXXXXXKHSPEPQNDNANAKVTLTCKKNPLVKINMDGIPI 229
R A VVGWPP+RS+R+N+ K + D K VK++MDG P
Sbjct: 115 RAPKAQVVGWPPVRSYRKNILAVQADKG--KDAADGGGDKSGAGAAAAAFVKVSMDGAPY 172
Query: 230 GRKIDLAAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSGEYTL 289
RK+DL Y SY LS A++++F F G ++ LL+GS EY
Sbjct: 173 LRKVDLKMYKSYLELSKALEKMFSSFTIGNCGSHGVN----GMNESKIADLLNGS-EYVP 227
Query: 290 VYEDSEGDRMLVGDVPWKVFVSTAKRLRVLRSSE 323
YED +GD MLVGDVPW++FV + KRLR+++ SE
Sbjct: 228 TYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSE 261
>Os03g0742900 Aux /IAA protein
Length = 236
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 84/156 (53%), Gaps = 26/156 (16%)
Query: 174 APVVGWPPIRSFRRNLAXXXXXKHSPEPQNDN------ANAKVTLTCKKNPLVKINMDGI 227
A VGWPP+RSFRRN+ K E + D ANA + VK++MDG
Sbjct: 85 AQAVGWPPVRSFRRNIMTVQSVKSKKEEEADKQQQQPAANAS---GSNSSAFVKVSMDGA 141
Query: 228 PIGRKIDLAAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSGEY 287
P RK+DL YNSY LS A++++F G A + N ++GS
Sbjct: 142 PYLRKVDLKMYNSYKDLSLALQKMF-GTFTATGNNMNE---------------VNGSDAV 185
Query: 288 TLVYEDSEGDRMLVGDVPWKVFVSTAKRLRVLRSSE 323
T YED +GD MLVGDVPW++FV + KRLR+++ SE
Sbjct: 186 T-TYEDKDGDWMLVGDVPWQMFVESCKRLRIMKGSE 220
>Os06g0355300
Length = 149
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 88/147 (59%), Gaps = 20/147 (13%)
Query: 171 GAAAPVVGWPPIRSFRRNL-----AXXXXXKHSPEPQNDNANAKVTLTCKKNP----LVK 221
++A +VGWPP+R+FR+NL A + +P +D + ++ P VK
Sbjct: 8 ASSAQLVGWPPVRTFRKNLSTPKPADADDLMNKMKPCSDEGHGSRDAAQERRPSSTMFVK 67
Query: 222 INMDGIPIGRKIDLAAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLL 281
+N++G +GRKIDL A+ SYD LS A++ +FHGFL + IA + D ++
Sbjct: 68 VNLEGYAVGRKIDLKAHRSYDSLSQALQSMFHGFL-------SDGIATR---DNELQRME 117
Query: 282 DGSGE-YTLVYEDSEGDRMLVGDVPWK 307
+GS + Y LVYED+EGDRMLVGDVPW+
Sbjct: 118 EGSKKRYVLVYEDNEGDRMLVGDVPWE 144
>Os05g0559400 Similar to IAA11 (Fragment)
Length = 281
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 81/148 (54%), Gaps = 10/148 (6%)
Query: 176 VVGWPPIRSFRRNLAXXXXXKHSPEPQNDNANAKVTLTCKKNPLVKINMDGIPIGRKIDL 235
VVGWPP+RS+R+N K E Q K + C VK++MDG P RK+DL
Sbjct: 128 VVGWPPVRSYRKNTLAASATKTKGEDQG-----KSEVGCC---YVKVSMDGAPYLRKVDL 179
Query: 236 AAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSGEYTLVYEDSE 295
Y+SY+ LS A++++F F+ + + D L D EY L YED +
Sbjct: 180 KTYSSYEDLSLALEKMFSCFITGRSSSHKTSKRDRLTDGSRADALKDQ--EYVLTYEDKD 237
Query: 296 GDRMLVGDVPWKVFVSTAKRLRVLRSSE 323
D MLVGD+PW +F ++ ++LR++R S+
Sbjct: 238 ADWMLVGDLPWDLFTTSCRKLRIMRGSD 265
>Os01g0231000 Similar to Auxin-responsive protein (Aux/IAA) (Fragment)
Length = 263
Score = 101 bits (251), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 84/148 (56%), Gaps = 24/148 (16%)
Query: 176 VVGWPPIRSFRRNLAXXXXXKHSPEPQNDNANAKVTLTCKKNPLVKINMDGIPIGRKIDL 235
VVGWPPIRS+R+N K + E + +AK + VK++MDG P RK+DL
Sbjct: 124 VVGWPPIRSYRKNTMATNQIKSNKE----DVDAK---QGQGFLYVKVSMDGAPYLRKVDL 176
Query: 236 AAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSGEYTLVYEDSE 295
Y +Y +S ++++F GF ++GA+++ GEY L YED +
Sbjct: 177 KTYKNYKDMSLGLEKMFIGF----------STGKEGAENQ-------KDGEYVLTYEDKD 219
Query: 296 GDRMLVGDVPWKVFVSTAKRLRVLRSSE 323
GD MLVGDVPW++F + +RLR+++ S+
Sbjct: 220 GDWMLVGDVPWEMFTDSCRRLRIMKGSD 247
>Os01g0675700 Similar to Auxin-responsive protein IAA14 (Indoleacetic
acid-induced protein 14) (SOLITARY-ROOT protein)
Length = 271
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 83/153 (54%), Gaps = 20/153 (13%)
Query: 176 VVGWPPIRSFRRNLAXXXXXKHSPEPQNDNANAKVTLTCKKNPL-VKINMDGIPIGRKID 234
VVGWPP+R++R+N K E + T + PL VK++MDG P RK+D
Sbjct: 118 VVGWPPVRNYRKNTLAASASKGKGEDKG---------TAEGGPLYVKVSMDGAPYLRKVD 168
Query: 235 LAAYNSYDGLSSAVKQLFHGFLQAQ----KDQTNAQIAQQGADDKIFYQLLDGSGEYTLV 290
L Y+SY+ LS A++++F F+ Q K ++ D + Q EY L
Sbjct: 169 LKMYSSYEDLSMALEKMFSCFITGQSGLRKSSNRDRLTNGSKADALQDQ------EYVLT 222
Query: 291 YEDSEGDRMLVGDVPWKVFVSTAKRLRVLRSSE 323
YED + D MLVGD+PW +F + ++L+++R S+
Sbjct: 223 YEDKDADWMLVGDLPWDLFTTICRKLKIMRGSD 255
>Os06g0335500 AUX/IAA protein family protein
Length = 266
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 83/150 (55%), Gaps = 10/150 (6%)
Query: 176 VVGWPPIRSFRRNLAXXX--XXKHSPEPQNDNANAKVTLTCKKNPLVKINMDGIPIGRKI 233
VVGWPPIRS+R+N K + + A A L VK++MDG P RK+
Sbjct: 109 VVGWPPIRSYRKNTMAMSQPALKGKDDGEAKQAPASGCL------YVKVSMDGAPYLRKV 162
Query: 234 DLAAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSGEYTLVYED 293
DL Y +Y LS A++++F F ++N + + G D L +G+ E L YED
Sbjct: 163 DLKMYKNYKELSLALEKMFSCFTVGH-GESNGKSGRDGLSDCRLMDLKNGT-ELVLTYED 220
Query: 294 SEGDRMLVGDVPWKVFVSTAKRLRVLRSSE 323
+ D MLVGDVPW++F + +RLR+++ S+
Sbjct: 221 KDEDWMLVGDVPWRMFTDSCRRLRIMKGSD 250
>Os06g0597000 Similar to Auxin responsive protein IAA-Re
Length = 193
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 79/147 (53%), Gaps = 27/147 (18%)
Query: 177 VGWPPIRSFRRNLAXXXXXKHSPEPQNDNANAKVTLTCKKNPLVKINMDGIPIGRKIDLA 236
VGWPP+R++RRN + D+A AK LVK+ +DG P RK+DLA
Sbjct: 63 VGWPPVRAYRRNAL-----------REDSARAK---------LVKVAVDGAPYLRKVDLA 102
Query: 237 AYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSGEYTLVYEDSEG 296
A+ Y L A+ +F L + + D L+ G+ EY YED +G
Sbjct: 103 AHAGYAPLLRALHGMFASCLAVRGGGGGDGEGTKLVD------LVTGA-EYVPTYEDKDG 155
Query: 297 DRMLVGDVPWKVFVSTAKRLRVLRSSE 323
D MLVGDVPWK+FV + KR+R+++SSE
Sbjct: 156 DWMLVGDVPWKMFVESCKRIRLMKSSE 182
>Os01g0178500 Similar to Auxin-responsive protein (Aux/IAA) (Fragment)
Length = 199
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 79/148 (53%), Gaps = 35/148 (23%)
Query: 176 VVGWPPIRSFRRNLAXXXXXKHSPEPQNDNANAKVTLTCKKNPLVKINMDGIPIGRKIDL 235
VVGWPP+RSFR+N L K VK+ +DG P RK+DL
Sbjct: 77 VVGWPPVRSFRKN----------------------ALAAK---FVKVAVDGAPYLRKVDL 111
Query: 236 AAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSGEYTLVYEDSE 295
AY+ YD L A++ F ++ I + D++ ++G+ EY YED +
Sbjct: 112 EAYSGYDQLLRALQDKFF---------SHFTIRKFADDERKLVDAVNGT-EYVPTYEDKD 161
Query: 296 GDRMLVGDVPWKVFVSTAKRLRVLRSSE 323
GD MLVGDVPWK+FV T +RLR+++SSE
Sbjct: 162 GDWMLVGDVPWKMFVETCQRLRLMKSSE 189
>Os05g0178600 Similar to Auxin-responsive protein (Aux/IAA) (Fragment)
Length = 212
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 80/150 (53%), Gaps = 26/150 (17%)
Query: 174 APVVGWPPIRSFRRNLAXXXXXKHSPEPQNDNANAKVTLTCKKNPLVKINMDGIPIGRKI 233
A VVGWPP+R+FR+N A + K VK+ +DG P RK+
Sbjct: 80 ARVVGWPPVRAFRKN----------------ALAALAAASSSKAKFVKVAVDGAPYLRKV 123
Query: 234 DLAAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSGEYTLVYED 293
DL AY YD L +A++ F ++ I + G ++ + G+ EY YED
Sbjct: 124 DLEAYRGYDQLLAALQDKFF---------SHFTIRKLGNEEMKLVDAVSGN-EYVPTYED 173
Query: 294 SEGDRMLVGDVPWKVFVSTAKRLRVLRSSE 323
+GD MLVGDVPWK+FV T +RLR+++SSE
Sbjct: 174 KDGDWMLVGDVPWKMFVETCQRLRLMKSSE 203
>Os07g0182400 AUX/IAA protein family protein
Length = 219
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 75/152 (49%), Gaps = 19/152 (12%)
Query: 172 AAAPVVGWPPIRSFRRNLAXXXXXKHSPEPQNDNANAKVTLTCKKNPLVKINMDGIPIGR 231
A A VVGWPP+R++RRN + + + K VK++MDG P R
Sbjct: 85 AKAQVVGWPPVRAYRRNTFHQAAAAAAATKKGGDEKQKQQQQ-GGGLYVKVSMDGAPYLR 143
Query: 232 KIDLAAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSGEYTLVY 291
K+DL Y L A+ LF A A G D G++ + Y
Sbjct: 144 KVDLKMCKGYRELREALDLLFTKCFSA--------TASDGCSD----------GQFAIAY 185
Query: 292 EDSEGDRMLVGDVPWKVFVSTAKRLRVLRSSE 323
ED +GD MLVGDVPW++F+S+ K+LR+++ SE
Sbjct: 186 EDKDGDLMLVGDVPWEMFISSCKKLRIMKGSE 217
>Os03g0633800 Similar to IAA6 (Fragment)
Length = 226
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 78/170 (45%), Gaps = 36/170 (21%)
Query: 172 AAAPVVGWPPIRSFRRNL--------------AXXXXXKHSPEPQNDNANAKVTLTCKKN 217
A A VVGWPP+RS+R++ K P +N + N
Sbjct: 67 AKAQVVGWPPVRSYRKSCFQQQSAAASKSKAAVSSCNNKDEPITKNAAPAPAASSAAAAN 126
Query: 218 --PLVKINMDGIPIGRKIDLAAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDK 275
LVK++MDG P RKIDL Y Y L A++ +F F GA D
Sbjct: 127 GGSLVKVSMDGAPYLRKIDLRMYKGYRELREALEAMFVCF--------------SGAADG 172
Query: 276 IFYQLLDGSGEYTLVYEDSEGDRMLVGDVPWKVFVSTAKRLRVLRSSELS 325
E+ + Y+D +GD MLVGDVP+ +F ST K+LR+++ SE +
Sbjct: 173 A------NPSEFAITYQDKDGDLMLVGDVPFDMFTSTCKKLRIMKRSEAT 216
>Os12g0601400 Similar to Auxin-responsive protein (Aux/IAA) (Fragment)
Length = 197
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 74/152 (48%), Gaps = 21/152 (13%)
Query: 176 VVGWPPIRSFRRNL----AXXXXXKHSPEPQNDNANAKVTLTCKKNPLVKINMDGIPIGR 231
VVGWPP+RS+R++ K P K + VK++MDG P R
Sbjct: 54 VVGWPPVRSYRKSCLQPTTTTTKSKPPPAAAAAETQQKEDVAGAGGLFVKVSMDGAPYLR 113
Query: 232 KIDLAAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSGEYTLVY 291
KIDL Y Y L A++ +F F A A +D + + Y
Sbjct: 114 KIDLKVYKGYRELREALEAMFLCF----SGGAAADAAVNPSD-------------FAVTY 156
Query: 292 EDSEGDRMLVGDVPWKVFVSTAKRLRVLRSSE 323
ED +GD MLVGDVP+++F+ST KRLR+++ SE
Sbjct: 157 EDKDGDLMLVGDVPFEMFISTCKRLRIMKGSE 188
>Os09g0527700 Similar to Auxin-induced protein IAA4
Length = 140
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 63/107 (58%), Gaps = 23/107 (21%)
Query: 219 LVKINMDGIPIGRKIDLAAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFY 278
VK++MDG P RK+D+AAY Y L A+ +F+ + I
Sbjct: 47 FVKVSMDGTPYLRKVDVAAYGDYLELVEALNDMFY----------CSTIG---------- 86
Query: 279 QLLDGSGEY--TLVYEDSEGDRMLVGDVPWKVFVSTAKRLRVLRSSE 323
L+DG GE+ +VYED +GD MLVGDVPW++FVS+ KR+RV+R+ E
Sbjct: 87 -LMDGYGEWEHAVVYEDGDGDWMLVGDVPWEMFVSSCKRMRVMRACE 132
>Os03g0797800 AUX/IAA protein family protein
Length = 197
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 65/152 (42%), Gaps = 27/152 (17%)
Query: 176 VVGWPPIRSFRRNLAXXXXXKHSPEPQNDNANAKVTLTCKKNP----LVKINMDGIPIGR 231
VVGWPP+ S+RR+ S T +KN VK++MDG P R
Sbjct: 67 VVGWPPVGSYRRS--TFQSSSSSTAAAAKGKGGGETDQGRKNKGGGLYVKVSMDGAPYLR 124
Query: 232 KIDLAAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSGEYTLVY 291
K+DL Y Y L A+ LF F Y
Sbjct: 125 KVDLRMYGGYRELRDALDALFGCFSADASASAAHFAVA---------------------Y 163
Query: 292 EDSEGDRMLVGDVPWKVFVSTAKRLRVLRSSE 323
ED +GD ML GDVPW +F+S+ K+LR++R SE
Sbjct: 164 EDKDGDLMLAGDVPWDMFISSCKKLRIMRGSE 195
>Os02g0723400 AUX/IAA protein family protein
Length = 205
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 10/105 (9%)
Query: 219 LVKINMDGIPIGRKIDLAAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFY 278
VK+ M+G+PIGRK+DL + Y GL + + +F + + Q A G +
Sbjct: 105 FVKVYMEGVPIGRKLDLLPLDGYKGLVARLASMFRASITYH--HCHRQFAVVGMKTNKVH 162
Query: 279 QLLDGSGEYTLVYEDSEGDRMLVGDVPWKVFVSTAKRLRVLRSSE 323
+L YED EGD M+ GDVPW++F+++ KRLR+ R+ +
Sbjct: 163 HVL--------TYEDQEGDWMMAGDVPWELFLTSVKRLRIARADD 199
>Os11g0221300 AUX/IAA protein family protein
Length = 171
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 67/118 (56%), Gaps = 13/118 (11%)
Query: 205 NANAKVTLTCKKNP--LVKINMDGIPIGRKIDLAAYNSYDGLSSAVKQLFHGF-LQAQKD 261
NA+A+ + +P VK+ M G P GRKI+LA +N+YD LS +K+L + + + +
Sbjct: 5 NASAEPVVKPGLSPSRFVKVFMHGEPFGRKINLALHNNYDSLSFTLKKLGNNYSMSPFEL 64
Query: 262 QTNAQIAQQGADDKIFYQLLDGSGEYTLVYEDSEGDRMLVGDVPWKVFVSTAKRLRVL 319
+ + GA D ++ L+Y+D +G R +GDVPW+VF +T K++ ++
Sbjct: 65 EGLVNKEEDGAID----------SDFDLLYDDMDGVRYFLGDVPWEVFTTTVKKIYIV 112
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.133 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,073,672
Number of extensions: 367424
Number of successful extensions: 779
Number of sequences better than 1.0e-10: 25
Number of HSP's gapped: 738
Number of HSP's successfully gapped: 25
Length of query: 335
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 234
Effective length of database: 11,762,187
Effective search space: 2752351758
Effective search space used: 2752351758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 156 (64.7 bits)