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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0221300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : AUX/IAA protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3 (0.0147) R2 : 0.014
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0784 (0.0308) R2dN8 : 0.018 R2N8 : 0.014
σ : 0.276
deviance : 34.94
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.38 0.271 3 0.056 0.123 0.131 -0.241 0.511 0.0616 6.62 86.98 5999 -- --
33.65 0.27 3 0.041 0.119 0.164 -0.26 -- 0.0453 6.53 88 7221 -- --
33.5 0.27 3 0.0563 0.129 0.129 -- 0.521 0.0629 7.03 86.39 6351 -- --
33.81 0.271 3 0.0391 0.119 0.169 -- -- 0.047 7.13 88.01 7114 -- --
34.27 0.273 3 0.0546 -- 0.128 -- 0.501 0.0643 -- 87.05 5837 -- --
34.02 0.273 2.99 0.0215 0.12 -- -0.255 -- 0.0775 6.59 -- -- -- --
34.18 0.274 2.99 0.0181 0.119 -- -- -- 0.0784 6.93 -- -- -- --
34.53 0.274 3 0.0392 -- 0.172 -- -- 0.0471 -- 88 7117 -- --
33.85 0.271 3 -- 0.122 0.163 -- -- 0.0456 7.03 87.52 7114 -- --
34.93 0.276 3 0.0205 -- -- -- -- 0.0807 -- -- -- -- --
34.19 0.274 2.99 -- 0.12 -- -- -- 0.0764 6.92 -- -- -- --
34.57 0.274 3 -- -- 0.164 -- -- 0.0444 -- 87.97 7115 -- --
34.94 0.276 3 -- -- -- -- -- 0.0784 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 25.80 radiation 10.0 10 > th dose independent rect. 6 1
27 25.80 radiation 10.0 10 > th dose dependent rect. 6 1
53 27.30 wind 3.0 30 < th dose dependent rect. 6 1
54 27.37 atmosphere 1005.0 30 > th dose dependent rect. 6 1
59 28.00 humidity 80.0 30 > th dose dependent rect. 6 1
62 28.31 temperature 30.0 30 < th dose dependent rect. 6 1
68 28.63 wind 3.0 30 < th dose independent rect. 6 1
76 28.95 temperature 20.0 30 > th dose independent rect. 6 1
78 28.97 wind 9.0 1440 < th dose independent rect. 7 1
79 28.97 temperature 10.0 1440 > th dose independent rect. 7 1
83 28.97 temperature 30.0 1440 < th dose independent rect. 7 1
87 28.97 humidity 50.0 1440 > th dose independent rect. 7 1
92 28.97 atmosphere 995.0 1440 > th dose independent rect. 7 1
93 28.97 atmosphere 1015.0 1440 < th dose independent rect. 7 1
94 28.97 temperature 10.0 1440 > th dose independent rect. 8 23
97 29.02 humidity 80.0 30 > th dose independent rect. 6 1
99 29.04 humidity 90.0 30 < th dose independent rect. 6 1
100 29.04 atmosphere 1005.0 30 > th dose independent rect. 6 1
104 29.06 temperature 10.0 30 > th dose independent rect. 6 1
106 29.06 temperature 30.0 30 < th dose independent rect. 6 1
107 29.06 humidity 50.0 30 > th dose independent rect. 6 1
110 29.06 atmosphere 995.0 30 > th dose independent rect. 6 1
111 29.06 atmosphere 1015.0 30 < th dose independent rect. 6 1
112 29.06 radiation 20.0 30 < th dose independent rect. 6 1
115 29.06 precipitation 0.1 30 < th dose independent rect. 6 1
116 29.06 temperature 10.0 30 > th dose independent rect. 7 23
117 29.06 precipitation 0.1 30 < th dose dependent rect. 6 1
119 29.09 wind 1.0 30 > th dose independent rect. 6 1
124 29.32 temperature 10.0 30 > th dose dependent rect. 6 1
126 29.41 radiation 40.0 30 < th dose dependent rect. 6 1
163 30.10 wind 9.0 30 < th dose independent rect. 7 23
168 30.39 atmosphere 1015.0 30 < th dose dependent rect. 6 1
171 30.56 humidity 90.0 10 < th dose dependent rect. 6 1
175 30.89 precipitation 0.1 30 < th dose independent rect. 7 23
176 30.89 precipitation 0.1 30 < th dose dependent rect. 7 23
182 31.15 atmosphere 995.0 30 > th dose independent rect. 7 23
185 31.22 temperature 25.0 30 > th dose dependent rect. 22 1
186 31.23 humidity 90.0 30 < th dose independent rect. 22 1
187 31.24 wind 9.0 1440 < th dose independent rect. 23 1
188 31.24 temperature 25.0 30 > th dose independent rect. 22 1
189 31.24 temperature 10.0 1440 > th dose independent rect. 23 1
192 31.24 temperature 30.0 1440 < th dose independent rect. 23 1
196 31.24 humidity 50.0 1440 > th dose independent rect. 23 1
206 31.24 atmosphere 995.0 1440 > th dose independent rect. 23 1
207 31.24 radiation 1.0 1440 < th dose independent rect. 23 1
227 31.24 temperature 10.0 1440 > th dose independent rect. 24 23
231 31.24 radiation 1.0 1440 < th dose dependent rect. 23 1
239 31.27 humidity 90.0 30 < th dose dependent rect. 22 1
240 31.28 atmosphere 1005.0 30 > th dose dependent rect. 22 1
243 31.30 wind 1.0 30 > th dose dependent rect. 6 1
244 31.31 wind 3.0 30 < th dose independent rect. 22 1
247 31.32 atmosphere 1005.0 30 > th dose independent rect. 22 1
249 31.33 precipitation 0.1 30 < th dose independent rect. 22 1
251 31.33 precipitation 0.1 30 < th dose dependent rect. 22 1
252 31.34 wind 1.0 30 > th dose independent rect. 22 1
256 31.34 temperature 10.0 30 > th dose independent rect. 22 1
258 31.34 temperature 30.0 30 < th dose independent rect. 22 1
259 31.34 humidity 50.0 30 > th dose independent rect. 22 1
262 31.34 atmosphere 995.0 30 > th dose independent rect. 22 1
264 31.34 atmosphere 1010.0 30 < th dose independent rect. 22 1
266 31.34 radiation 1.0 30 < th dose independent rect. 22 1
271 31.34 temperature 10.0 30 > th dose independent rect. 23 23
272 31.34 wind 7.0 30 < th dose dependent rect. 22 1
274 31.34 radiation 1.0 30 < th dose dependent rect. 22 1
295 31.36 wind 9.0 30 < th dose independent rect. 23 23
299 31.38 humidity 50.0 30 > th dose dependent rect. 22 1
304 31.42 wind 1.0 30 > th dose dependent rect. 22 1
308 31.44 atmosphere 1015.0 30 < th dose dependent rect. 22 1
338 31.59 humidity 90.0 90 < th dose independent rect. 2 5
339 31.59 temperature 30.0 30 < th dose dependent rect. 22 1
409 31.86 atmosphere 1005.0 90 > th dose dependent rect. 2 5
469 32.02 humidity 50.0 30 > th dose independent rect. 7 23
480 32.06 temperature 30.0 30 < th dose independent rect. 7 23
503 32.22 radiation 10.0 30 > th dose independent sin 11 NA
522 32.30 atmosphere 995.0 720 > th dose independent rect. 7 8
523 32.30 precipitation 0.1 720 < th dose independent rect. 19 8
524 32.30 precipitation 0.1 720 < th dose independent rect. 15 16
525 32.30 atmosphere 1005.0 270 > th dose dependent rect. 3 1
527 32.30 precipitation 0.1 720 < th dose dependent rect. 19 8
528 32.30 precipitation 0.1 720 < th dose dependent rect. 15 16
550 32.35 atmosphere 995.0 720 > th dose independent rect. 3 16
566 32.37 temperature 10.0 30 > th dose dependent rect. 23 7
574 32.40 wind 9.0 720 < th dose independent rect. 19 8
580 32.41 atmosphere 995.0 720 > th dose independent rect. 15 16
582 32.42 temperature 10.0 720 > th dose independent rect. 19 8
583 32.42 temperature 30.0 720 < th dose independent rect. 19 8
584 32.42 humidity 50.0 720 > th dose independent rect. 19 8
585 32.42 atmosphere 995.0 720 > th dose independent rect. 19 8
586 32.42 radiation 1.0 720 < th dose independent rect. 19 8
591 32.42 temperature 10.0 720 > th dose independent rect. 3 16
593 32.42 radiation 1.0 720 < th dose dependent rect. 19 8
603 32.44 temperature 10.0 720 > th dose independent rect. 7 8
604 32.44 atmosphere 1015.0 720 < th dose independent rect. 7 8
605 32.44 temperature 10.0 720 > th dose independent rect. 15 16
606 32.44 wind 1.0 30 > th dose independent rect. 7 23
612 32.47 temperature 10.0 1440 > th dose independent rect. 24 7
615 32.47 temperature 30.0 1440 < th dose independent rect. 24 7
619 32.47 humidity 50.0 1440 > th dose independent rect. 24 7
624 32.47 atmosphere 995.0 1440 > th dose independent rect. 24 7
625 32.47 radiation 40.0 1440 < th dose independent rect. 24 7
629 32.47 temperature 10.0 1440 > th dose independent rect. 7 17
632 32.47 precipitation 0.1 30 < th dose independent rect. 6 17
634 32.47 atmosphere 995.0 30 > th dose independent rect. 23 23
637 32.47 precipitation 0.1 30 < th dose dependent rect. 6 17
642 32.49 temperature 10.0 30 > th dose independent rect. 23 7
643 32.49 temperature 30.0 30 < th dose independent rect. 23 7
644 32.49 humidity 50.0 30 > th dose independent rect. 23 7
647 32.49 atmosphere 995.0 30 > th dose independent rect. 23 7
649 32.49 radiation 20.0 30 < th dose independent rect. 23 7
652 32.49 temperature 10.0 30 > th dose independent rect. 6 17
654 32.49 atmosphere 1015.0 30 < th dose independent rect. 6 17
656 32.50 wind 9.0 30 < th dose independent rect. 23 7
658 32.50 precipitation 0.1 30 < th dose independent rect. 23 7
662 32.50 precipitation 0.1 30 < th dose dependent rect. 23 7
664 32.51 wind 9.0 30 < th dose independent rect. 6 17
669 32.53 wind 3.0 270 > th dose independent rect. 3 1
675 32.54 wind 9.0 4320 > th dose dependent rect. 13 1
676 32.54 radiation 40.0 30 < th dose dependent rect. 23 7
690 32.55 wind 1.0 30 > th dose independent rect. 6 17
710 32.58 precipitation 0.1 720 < th dose independent rect. 7 8
713 32.58 precipitation 0.1 720 < th dose dependent rect. 7 8
761 32.64 atmosphere 1010.0 10 < th dose independent rect. 23 8
765 32.64 humidity 50.0 30 > th dose dependent rect. 23 7
767 32.65 humidity 50.0 10 > th dose independent rect. 6 17
787 32.67 atmosphere 1010.0 10 < th dose independent rect. 23 10
797 32.68 humidity 90.0 30 < th dose independent rect. 3 20
803 32.68 temperature 10.0 30 > th dose dependent rect. 6 17
814 32.70 humidity 90.0 30 < th dose independent rect. 6 17
821 32.72 atmosphere 995.0 30 > th dose independent rect. 6 17
834 32.74 atmosphere 995.0 30 > th dose dependent rect. 23 7
855 32.78 atmosphere 1015.0 30 < th dose independent rect. 7 23
860 32.78 wind 9.0 30 < th dose dependent rect. 23 7
861 32.78 wind 3.0 30 < th dose dependent rect. 6 17
865 32.79 radiation 1.0 90 < th dose independent rect. 23 12
875 32.80 atmosphere 995.0 720 > th dose independent rect. 13 6
876 32.80 radiation 1.0 90 < th dose independent rect. 23 9
879 32.80 humidity 90.0 90 < th dose dependent rect. 2 5
885 32.81 atmosphere 1010.0 10 < th dose independent rect. 23 13
894 32.82 atmosphere 995.0 720 > th dose independent rect. 7 18
907 32.84 radiation 40.0 720 < th dose independent rect. 15 16
908 32.84 precipitation 0.1 720 < th dose independent rect. 19 18
913 32.84 radiation 10.0 30 < th dose dependent rect. 23 9
915 32.84 precipitation 0.1 720 < th dose dependent rect. 19 18
916 32.85 atmosphere 1010.0 10 < th dose independent sin 7 NA
918 32.85 wind 1.0 30 > th dose independent rect. 23 7
921 32.85 atmosphere 995.0 720 > th dose independent rect. 23 16
940 32.86 atmosphere 995.0 10 > th dose dependent rect. 8 22
958 32.87 precipitation 0.1 720 < th dose independent rect. 13 6
969 32.87 precipitation 0.1 720 < th dose dependent rect. 13 6
972 32.87 wind 9.0 30 < th dose dependent rect. 6 17
1000 32.90 precipitation 0.1 720 < th dose independent rect. 1 6