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Os06g0597000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Auxin responsive protein IAA-Re.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.83 (0.0243) R2 : 0.692
β1 : -0.705 (0.0891) R2dD : 0.0439 R2D : 0.0242
β2 : 1.97 (0.0634) R2dC : 0.652 R2C : 0.63
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.3 (0.0519) R2dN8 : 0.0302 R2N8 : 0.00269
σ : 0.457
deviance : 95.41
__
_____
C
peak time of C : 5.49
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
87.44 0.439 8.86 -0.885 2 8.34 0.638 -26 -0.29 5.54 1.5 79 -- --
103.85 0.475 8.78 -0.46 2.17 5.38 0.986 -- -0.0864 5.35 2 59 -- --
88.43 0.438 8.86 -0.882 2 8.3 -- -26.2 -0.294 5.51 1.482 84 -- --
88.79 0.439 8.82 -0.732 2 2.43 -- -- -0.294 5.51 1.501 120 -- --
294.13 0.799 8.89 -0.803 -- 8.6 -- -30.3 -0.249 -- 1.5 57 -- --
94.87 0.457 8.82 -0.706 1.96 -- 0.473 -- -0.298 5.51 -- -- -- --
95.41 0.457 8.83 -0.705 1.97 -- -- -- -0.3 5.49 -- -- -- --
294.66 0.799 8.85 -0.653 -- 1.24 -- -- -0.249 -- 1.651 149 -- --
102.09 0.471 8.81 -- 1.99 2.11 -- -- -0.211 5.48 1.796 178 -- --
296.41 0.804 8.85 -0.639 -- -- -- -- -0.252 -- -- -- -- --
108.5 0.487 8.81 -- 1.95 -- -- -- -0.222 5.51 -- -- -- --
305.88 0.815 8.84 -- -- 1.08 -- -- -0.177 -- 1.506 99 -- --
307.19 0.818 8.84 -- -- -- -- -- -0.181 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 79.91 temperature 30.0 90 < th dose dependent rect. 17 3
2 80.27 temperature 25.0 30 < th dose independent rect. 17 4
22 81.93 humidity 70.0 90 > th dose dependent rect. 17 3
25 82.56 temperature 30.0 270 < th dose dependent rect. 17 1
26 82.63 humidity 60.0 90 > th dose dependent rect. 3 17
33 83.06 humidity 80.0 90 > th dose independent rect. 17 3
34 83.09 humidity 70.0 90 > th dose independent rect. 3 17
37 83.16 radiation 20.0 270 < th dose dependent rect. 16 14
41 83.26 precipitation 0.1 270 > th dose dependent rect. 16 2
46 83.34 precipitation 0.1 270 > th dose independent rect. 17 1
47 83.38 precipitation 0.1 270 > th dose independent rect. 15 3
51 83.41 radiation 1.0 270 < th dose independent rect. 17 1
57 83.43 radiation 10.0 270 < th dose independent rect. 16 14
89 83.68 precipitation 0.1 270 > th dose dependent rect. 6 12
99 83.77 temperature 25.0 270 < th dose independent rect. 17 1
183 84.48 precipitation 0.1 270 > th dose independent rect. 7 11
208 84.64 radiation 1.0 270 < th dose dependent rect. 17 1
212 84.68 precipitation 0.1 10 > th dose independent rect. 17 3
232 84.68 precipitation 0.1 10 > th dose dependent rect. 17 3
263 84.74 precipitation 0.1 90 < th dose independent rect. 13 14
266 84.74 precipitation 0.1 90 < th dose dependent rect. 13 14
270 84.77 radiation 10.0 270 < th dose dependent rect. 16 3
279 84.83 temperature 30.0 90 < th dose independent rect. 3 17
288 84.89 humidity 70.0 30 > th dose dependent rect. 8 12
315 85.05 humidity 50.0 270 > th dose independent rect. 2 18
317 85.05 radiation 1.0 90 < th dose dependent rect. 4 16
339 85.16 temperature 30.0 270 < th dose independent rect. 1 19
382 85.34 temperature 10.0 1440 > th dose independent rect. 20 1
385 85.34 temperature 30.0 1440 < th dose independent rect. 20 1
389 85.34 humidity 50.0 1440 > th dose independent rect. 20 1
395 85.34 atmosphere 995.0 1440 > th dose independent rect. 20 1
399 85.34 atmosphere 1000.0 270 < th dose independent rect. 16 1
400 85.34 radiation 1.0 1440 < th dose independent rect. 20 1
420 85.34 temperature 10.0 1440 > th dose independent rect. 21 23
423 85.34 radiation 1.0 1440 < th dose dependent rect. 20 1
434 85.36 atmosphere 1000.0 270 < th dose dependent rect. 16 1
438 85.39 humidity 80.0 30 > th dose independent rect. 9 11
444 85.40 humidity 70.0 90 > th dose dependent rect. 11 9
449 85.42 humidity 50.0 270 > th dose independent rect. 16 14
450 85.42 radiation 40.0 43200 < th dose dependent rect. 20 1
493 85.61 temperature 30.0 90 < th dose dependent rect. 3 17
513 85.68 precipitation 0.1 720 < th dose independent rect. 4 14
516 85.68 precipitation 0.1 720 < th dose dependent rect. 4 14
518 85.69 wind 9.0 270 < th dose independent rect. 5 11
519 85.69 wind 9.0 720 < th dose independent rect. 14 18
536 85.75 radiation 1.0 720 > th dose independent rect. 8 6
581 85.90 radiation 1.0 90 < th dose independent rect. 4 16
585 85.91 precipitation 0.1 270 > th dose dependent rect. 13 12
589 85.92 precipitation 0.1 90 < th dose independent rect. 20 23
591 85.92 precipitation 0.1 90 < th dose dependent rect. 20 23
608 85.97 temperature 30.0 270 < th dose independent rect. 16 14
629 86.01 humidity 70.0 90 > th dose independent rect. 17 14
634 86.02 humidity 50.0 720 > th dose dependent rect. 20 5
639 86.03 radiation 1.0 270 < th dose independent rect. 2 18
665 86.08 precipitation 0.1 90 < th dose independent rect. 7 11
668 86.08 precipitation 0.1 90 < th dose dependent rect. 7 11
706 86.18 temperature 15.0 720 > th dose independent rect. 2 18
728 86.21 precipitation 0.1 270 > th dose dependent sin 19 NA
733 86.22 wind 9.0 270 < th dose independent rect. 12 13
734 86.22 temperature 15.0 720 > th dose independent rect. 14 18
746 86.26 precipitation 0.1 270 > th dose dependent rect. 15 10
761 86.29 precipitation 0.1 270 < th dose independent rect. 5 11
763 86.29 precipitation 0.1 270 < th dose dependent rect. 5 11
768 86.31 temperature 15.0 720 > th dose independent rect. 20 6
786 86.34 temperature 15.0 720 > th dose independent rect. 8 6
826 86.40 atmosphere 995.0 720 > th dose independent rect. 8 6
827 86.40 atmosphere 1015.0 720 < th dose independent rect. 8 6
832 86.41 temperature 10.0 270 > th dose independent rect. 5 11
833 86.41 atmosphere 1015.0 270 < th dose independent rect. 5 11
834 86.41 temperature 10.0 270 > th dose independent rect. 16 13
835 86.41 radiation 40.0 270 < th dose independent rect. 16 13
838 86.42 atmosphere 1015.0 720 < th dose independent rect. 2 18
841 86.42 humidity 50.0 90 > th dose dependent rect. 20 7
857 86.45 temperature 30.0 720 < th dose independent rect. 20 6
858 86.45 humidity 50.0 720 > th dose independent rect. 20 6
861 86.45 atmosphere 995.0 720 > th dose independent rect. 20 6
862 86.45 radiation 1.0 720 < th dose independent rect. 20 6
869 86.45 radiation 10.0 720 < th dose dependent rect. 20 6
890 86.48 wind 9.0 720 < th dose independent rect. 20 6
895 86.49 radiation 10.0 14400 < th dose dependent rect. 21 7
909 86.52 wind 9.0 720 < th dose independent rect. 20 15
916 86.54 radiation 1.0 90 < th dose independent rect. 10 10
940 86.57 humidity 50.0 90 > th dose dependent rect. 3 10
946 86.58 atmosphere 995.0 270 > th dose independent rect. 5 11
947 86.58 radiation 1.0 90 < th dose dependent sin 23 NA
953 86.59 temperature 10.0 720 > th dose independent rect. 23 9
954 86.59 temperature 30.0 720 < th dose independent rect. 23 9
956 86.59 humidity 50.0 720 > th dose independent rect. 23 9
958 86.59 atmosphere 995.0 720 > th dose independent rect. 23 9
959 86.59 temperature 10.0 720 > th dose independent rect. 8 15
965 86.60 wind 9.0 720 < th dose independent rect. 23 9
991 86.65 radiation 40.0 270 < th dose dependent rect. 1 19