Os01g0178500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Auxin-responsive protein (Aux/IAA) (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os01g0178500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Auxin-responsive protein (Aux/IAA) (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 91.94 | 0.451 | 10.3 | 1.38 | 1.12 | 4.87 | 1.61 | 1.04 | 0.978 | 19 | 3.161 | 665 | -- | -- |
| 92.52 | 0.448 | 10.3 | 1.39 | 1.03 | 4.75 | 0.948 | -- | 0.984 | 19.1 | 3.128 | 661 | -- | -- |
| 94.25 | 0.452 | 10.3 | 1.36 | 0.734 | 4.38 | -- | -0.36 | 0.975 | 19.6 | 3.205 | 652 | -- | -- |
| 94.56 | 0.453 | 10.3 | 1.35 | 0.775 | 4.43 | -- | -- | 0.968 | 19.5 | 3.216 | 654 | -- | -- |
| 97.95 | 0.461 | 10.3 | 1.32 | -- | 3.6 | -- | 0.151 | 0.931 | -- | 3.866 | 598 | -- | -- |
| 135.6 | 0.546 | 10.3 | 1.11 | 3.18 | -- | -0.107 | -- | 0.744 | 4.66 | -- | -- | -- | -- |
| 135.63 | 0.545 | 10.3 | 1.11 | 3.18 | -- | -- | -- | 0.745 | 4.65 | -- | -- | -- | -- |
| 97.6 | 0.46 | 10.3 | 1.28 | -- | 3.57 | -- | -- | 0.942 | -- | 3.787 | 597 | -- | -- |
| 139.01 | 0.549 | 10.3 | -- | 0.193 | 3.79 | -- | -- | 0.833 | 19.3 | 5.734 | 608 | -- | -- |
| 673.53 | 1.21 | 10.3 | 1.23 | -- | -- | -- | -- | 0.828 | -- | -- | -- | -- | -- |
| 168.03 | 0.606 | 10.3 | -- | 3.2 | -- | -- | -- | 0.621 | 4.65 | -- | -- | -- | -- |
| 139.21 | 0.55 | 10.3 | -- | -- | 3.58 | -- | -- | 0.805 | -- | 5.748 | 592 | -- | -- |
| 713.45 | 1.25 | 10.4 | -- | -- | -- | -- | -- | 0.692 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 93.38 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 14 |
| 2 | 93.61 | radiation | 10 | 720 | < th | dose dependent | sin | 13 | NA |
| 4 | 94.06 | humidity | 50 | 270 | > th | dose dependent | rect. | 10 | 11 |
| 6 | 94.33 | radiation | 10 | 720 | < th | dose dependent | rect. | 15 | 16 |
| 8 | 94.60 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 22 |
| 13 | 95.34 | radiation | 1 | 720 | < th | dose independent | sin | 13 | NA |
| 20 | 95.95 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 6 |
| 23 | 96.07 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 15 |
| 24 | 96.22 | radiation | 10 | 720 | < th | dose dependent | rect. | 15 | 6 |
| 26 | 96.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 6 |
| 28 | 96.35 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 14 |
| 29 | 96.37 | radiation | 1 | 720 | < th | dose independent | rect. | 23 | 23 |
| 31 | 96.46 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 18 |
| 38 | 96.57 | radiation | 1 | 720 | < th | dose independent | sin | 23 | NA |
| 40 | 96.61 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 22 |
| 53 | 96.95 | humidity | 50 | 270 | > th | dose dependent | rect. | 7 | 22 |
| 58 | 97.15 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 22 |
| 74 | 97.55 | radiation | 10 | 720 | < th | dose dependent | rect. | 11 | 20 |
| 77 | 97.61 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 19 |
| 89 | 97.78 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 22 |
| 110 | 98.07 | radiation | 10 | 720 | < th | dose dependent | rect. | 10 | 11 |
| 119 | 98.18 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 18 |
| 132 | 98.35 | radiation | 1 | 720 | > th | dose independent | sin | 13 | NA |
| 145 | 98.48 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 153 | 98.58 | radiation | 1 | 720 | < th | dose dependent | sin | 0 | NA |
| 169 | 98.76 | radiation | 10 | 720 | < th | dose dependent | rect. | 3 | 18 |
| 177 | 98.98 | radiation | 1 | 720 | > th | dose independent | rect. | 5 | 14 |
| 194 | 99.06 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 277 | 99.47 | radiation | 40 | 720 | < th | dose dependent | rect. | 15 | 15 |
| 320 | 99.79 | radiation | 1 | 720 | < th | dose dependent | rect. | 23 | 23 |
| 321 | 99.80 | radiation | 1 | 720 | < th | dose dependent | rect. | 16 | 22 |
| 348 | 100.06 | radiation | 10 | 720 | < th | dose dependent | rect. | 1 | 20 |
| 358 | 100.16 | humidity | 70 | 270 | > th | dose independent | rect. | 10 | 10 |
| 392 | 100.55 | humidity | 60 | 270 | > th | dose dependent | sin | 19 | NA |
| 405 | 100.67 | radiation | 1 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 409 | 100.70 | radiation | 1 | 720 | > th | dose independent | sin | 1 | NA |
| 417 | 100.76 | humidity | 70 | 270 | > th | dose independent | rect. | 10 | 19 |
| 453 | 101.02 | humidity | 90 | 270 | < th | dose dependent | rect. | 12 | 22 |
| 477 | 101.22 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 23 |
| 504 | 101.43 | humidity | 50 | 720 | > th | dose dependent | rect. | 1 | 19 |
| 527 | 101.64 | temperature | 10 | 270 | > th | dose dependent | rect. | 13 | 12 |
| 532 | 101.69 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 567 | 101.89 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 23 |
| 621 | 102.47 | radiation | 1 | 720 | > th | dose independent | rect. | 12 | 7 |
| 635 | 102.55 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 23 |
| 720 | 103.04 | humidity | 60 | 720 | > th | dose dependent | rect. | 11 | 2 |
| 738 | 103.12 | radiation | 1 | 720 | > th | dose dependent | sin | 12 | NA |
| 816 | 103.72 | humidity | 90 | 270 | < th | dose dependent | sin | 19 | NA |
| 854 | 104.00 | humidity | 70 | 270 | > th | dose independent | rect. | 15 | 14 |
| 855 | 104.01 | humidity | 50 | 720 | > th | dose dependent | rect. | 9 | 6 |
| 879 | 104.12 | humidity | 80 | 720 | < th | dose independent | rect. | 6 | 12 |
| 893 | 104.19 | temperature | 30 | 270 | < th | dose independent | rect. | 10 | 11 |
| 913 | 104.29 | humidity | 60 | 10 | > th | dose dependent | sin | 16 | NA |