BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0178500 Os01g0178500|AK109373
(199 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0178500 Similar to Auxin-responsive protein (Aux/IAA) ... 281 2e-76
Os05g0178600 Similar to Auxin-responsive protein (Aux/IAA) ... 228 3e-60
Os06g0597000 Similar to Auxin responsive protein IAA-Re 179 9e-46
Os12g0601300 Similar to Auxin-responsive protein (Aux/IAA) ... 164 3e-41
Os03g0633500 Similar to Auxin-responsive protein (Aux/IAA) ... 149 1e-36
Os03g0742900 Aux /IAA protein 143 8e-35
Os06g0335500 AUX/IAA protein family protein 141 3e-34
Os01g0231000 Similar to Auxin-responsive protein (Aux/IAA) ... 137 5e-33
Os05g0559400 Similar to IAA11 (Fragment) 134 6e-32
Os01g0675700 Similar to Auxin-responsive protein IAA14 (Ind... 131 3e-31
Os12g0601400 Similar to Auxin-responsive protein (Aux/IAA) ... 119 1e-27
Os07g0182400 AUX/IAA protein family protein 107 4e-24
Os09g0527700 Similar to Auxin-induced protein IAA4 107 7e-24
Os03g0633800 Similar to IAA6 (Fragment) 106 1e-23
Os02g0817600 AUX/IAA protein family protein 99 2e-21
Os03g0797800 AUX/IAA protein family protein 97 5e-21
Os01g0741900 Similar to Auxin-responsive protein IAA26 (Ind... 96 2e-20
Os01g0190300 Similar to Auxin-responsive protein IAA26 (Ind... 92 3e-19
Os02g0805100 Similar to Auxin-responsive protein IAA12 (Ind... 89 1e-18
Os05g0523300 Similar to IAA8 (Fragment) 89 3e-18
Os02g0228900 Similar to Auxin-responsive protein IAA18 (Ind... 88 4e-18
Os08g0109400 AUX/IAA protein family protein 82 3e-16
Os02g0723400 AUX/IAA protein family protein 74 5e-14
Os06g0166500 Similar to Auxin-responsive protein IAA20 (Ind... 72 2e-13
>Os01g0178500 Similar to Auxin-responsive protein (Aux/IAA) (Fragment)
Length = 199
Score = 281 bits (719), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 141/183 (77%), Positives = 141/183 (77%)
Query: 17 GLDFEDTALTLRLPGSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR 76
GLDFEDTALTLRLPGSL R
Sbjct: 17 GLDFEDTALTLRLPGSLAAAAAPDPDRKRSSPSSSDAADAADNSSPLAAAADAPPAPKAR 76
Query: 77 VVGWPPVRSFRKNALAAKFVKVAVDGAPYLRKVDLEAYSGYDQLLRALQDKFFSHFTIRK 136
VVGWPPVRSFRKNALAAKFVKVAVDGAPYLRKVDLEAYSGYDQLLRALQDKFFSHFTIRK
Sbjct: 77 VVGWPPVRSFRKNALAAKFVKVAVDGAPYLRKVDLEAYSGYDQLLRALQDKFFSHFTIRK 136
Query: 137 FADDERKLVDAVNGTEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAVNLAPR 196
FADDERKLVDAVNGTEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAVNLAPR
Sbjct: 137 FADDERKLVDAVNGTEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAVNLAPR 196
Query: 197 AAQ 199
AAQ
Sbjct: 197 AAQ 199
>Os05g0178600 Similar to Auxin-responsive protein (Aux/IAA) (Fragment)
Length = 212
Score = 228 bits (580), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 127/196 (64%), Positives = 132/196 (67%), Gaps = 14/196 (7%)
Query: 17 GLDFEDTALTLRLPGSLXXXXXXXXXXXXXXXXXXXXXXXXXX-----XXXXXXXXXXXX 71
GLDFEDTALTLRLPGS
Sbjct: 17 GLDFEDTALTLRLPGSSSSSSSSSSSSSSSSPSEPDRKRASATDDDPDNRLGSTATESPP 76
Query: 72 XXXXRVVGWPPVRSFRKNALAAK---------FVKVAVDGAPYLRKVDLEAYSGYDQLLR 122
RVVGWPPVR+FRKNALAA FVKVAVDGAPYLRKVDLEAY GYDQLL
Sbjct: 77 SPKARVVGWPPVRAFRKNALAALAAASSSKAKFVKVAVDGAPYLRKVDLEAYRGYDQLLA 136
Query: 123 ALQDKFFSHFTIRKFADDERKLVDAVNGTEYVPTYEDKDGDWMLVGDVPWKMFVETCQRL 182
ALQDKFFSHFTIRK ++E KLVDAV+G EYVPTYEDKDGDWMLVGDVPWKMFVETCQRL
Sbjct: 137 ALQDKFFSHFTIRKLGNEEMKLVDAVSGNEYVPTYEDKDGDWMLVGDVPWKMFVETCQRL 196
Query: 183 RLMKSSEAVNLAPRAA 198
RLMKSSEAVNLAPR+A
Sbjct: 197 RLMKSSEAVNLAPRSA 212
>Os06g0597000 Similar to Auxin responsive protein IAA-Re
Length = 193
Score = 179 bits (455), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 101/188 (53%), Positives = 114/188 (60%), Gaps = 21/188 (11%)
Query: 17 GLDFEDTALTLRLPGSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR 76
GLD++DTALTL LPGS R
Sbjct: 15 GLDYDDTALTLALPGSSSSSSSTADPERKRAAHADHADAKPPSPKA-------------R 61
Query: 77 VVGWPPVRSFRKNALA-----AKFVKVAVDGAPYLRKVDLEAYSGYDQLLRALQDKFFSH 131
VGWPPVR++R+NAL AK VKVAVDGAPYLRKVDL A++GY LLRAL F S
Sbjct: 62 AVGWPPVRAYRRNALREDSARAKLVKVAVDGAPYLRKVDLAAHAGYAPLLRALHGMFASC 121
Query: 132 FTIRKFADDER---KLVDAVNGTEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSS 188
+R + KLVD V G EYVPTYEDKDGDWMLVGDVPWKMFVE+C+R+RLMKSS
Sbjct: 122 LAVRGGGGGDGEGTKLVDLVTGAEYVPTYEDKDGDWMLVGDVPWKMFVESCKRIRLMKSS 181
Query: 189 EAVNLAPR 196
EAVNL+PR
Sbjct: 182 EAVNLSPR 189
>Os12g0601300 Similar to Auxin-responsive protein (Aux/IAA) (Fragment)
Length = 277
Score = 164 bits (416), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 84/153 (54%), Positives = 103/153 (67%), Gaps = 30/153 (19%)
Query: 76 RVVGWPPVRSFRKNALAAK-----------------------FVKVAVDGAPYLRKVDLE 112
+VVGWPPVRS+RKN LA + FVKV++DGAPYLRKVDL+
Sbjct: 120 QVVGWPPVRSYRKNILAVQADKGKDAADGGGDKSGAGAAAAAFVKVSMDGAPYLRKVDLK 179
Query: 113 AYSGYDQLLRALQDKFFSHFTIRKFAD------DERKLVDAVNGTEYVPTYEDKDGDWML 166
Y Y +L +AL+ K FS FTI +E K+ D +NG+EYVPTYEDKDGDWML
Sbjct: 180 MYKSYLELSKALE-KMFSSFTIGNCGSHGVNGMNESKIADLLNGSEYVPTYEDKDGDWML 238
Query: 167 VGDVPWKMFVETCQRLRLMKSSEAVNLAPRAAQ 199
VGDVPW+MFVE+C+RLR+MK SEA+ LAPRA +
Sbjct: 239 VGDVPWEMFVESCKRLRIMKGSEAIGLAPRAME 271
>Os03g0633500 Similar to Auxin-responsive protein (Aux/IAA) (Fragment)
Length = 241
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 92/129 (71%), Gaps = 14/129 (10%)
Query: 76 RVVGWPPVRSFRKNALAAK-----FVKVAVDGAPYLRKVDLEAYSGYDQLLRALQDKFFS 130
+VVGWPPVRSFRKN LA K VKV++DGAPYLRK+D+ Y Y +L A Q+ F+
Sbjct: 100 QVVGWPPVRSFRKNVLAEKCKAAALVKVSMDGAPYLRKIDVAMYKSYPELSMAFQN-MFT 158
Query: 131 HFTIRKFADDER-----KLVDAVNGTEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLM 185
FTI K ++ KL D + EYVPTYEDKDGDWMLVGDVPW+MFVE+C+RLR+M
Sbjct: 159 SFTIGKCGSHQQLKESNKLRDDL---EYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIM 215
Query: 186 KSSEAVNLA 194
K SEA+ L
Sbjct: 216 KGSEAIGLG 224
>Os03g0742900 Aux /IAA protein
Length = 236
Score = 143 bits (361), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 93/150 (62%), Gaps = 35/150 (23%)
Query: 76 RVVGWPPVRSFRKNAL----------------------------AAKFVKVAVDGAPYLR 107
+ VGWPPVRSFR+N + ++ FVKV++DGAPYLR
Sbjct: 86 QAVGWPPVRSFRRNIMTVQSVKSKKEEEADKQQQQPAANASGSNSSAFVKVSMDGAPYLR 145
Query: 108 KVDLEAYSGYDQLLRALQDKFFSHFTIRKFADDERKLVDAVNGTEYVPTYEDKDGDWMLV 167
KVDL+ Y+ Y L ALQ K F FT +E VNG++ V TYEDKDGDWMLV
Sbjct: 146 KVDLKMYNSYKDLSLALQ-KMFGTFTATGNNMNE------VNGSDAVTTYEDKDGDWMLV 198
Query: 168 GDVPWKMFVETCQRLRLMKSSEAVNLAPRA 197
GDVPW+MFVE+C+RLR+MK SEA+ LAPRA
Sbjct: 199 GDVPWQMFVESCKRLRIMKGSEAIGLAPRA 228
>Os06g0335500 AUX/IAA protein family protein
Length = 266
Score = 141 bits (356), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/151 (49%), Positives = 95/151 (62%), Gaps = 31/151 (20%)
Query: 77 VVGWPPVRSFRKNALAAK---------------------FVKVAVDGAPYLRKVDLEAYS 115
VVGWPP+RS+RKN +A +VKV++DGAPYLRKVDL+ Y
Sbjct: 109 VVGWPPIRSYRKNTMAMSQPALKGKDDGEAKQAPASGCLYVKVSMDGAPYLRKVDLKMYK 168
Query: 116 GYDQLLRALQDKFFSHFTIRKFADDER---------KLVDAVNGTEYVPTYEDKDGDWML 166
Y +L AL+ K FS FT+ + + +L+D NGTE V TYEDKD DWML
Sbjct: 169 NYKELSLALE-KMFSCFTVGHGESNGKSGRDGLSDCRLMDLKNGTELVLTYEDKDEDWML 227
Query: 167 VGDVPWKMFVETCQRLRLMKSSEAVNLAPRA 197
VGDVPW+MF ++C+RLR+MK S+AV LAPRA
Sbjct: 228 VGDVPWRMFTDSCRRLRIMKGSDAVGLAPRA 258
>Os01g0231000 Similar to Auxin-responsive protein (Aux/IAA) (Fragment)
Length = 263
Score = 137 bits (345), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 90/141 (63%), Gaps = 25/141 (17%)
Query: 77 VVGWPPVRSFRKNALAAK------------------FVKVAVDGAPYLRKVDLEAYSGYD 118
VVGWPP+RS+RKN +A +VKV++DGAPYLRKVDL+ Y Y
Sbjct: 124 VVGWPPIRSYRKNTMATNQIKSNKEDVDAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNYK 183
Query: 119 QLLRALQDKFFSHFTIRKFADDERKLVDAVNGTEYVPTYEDKDGDWMLVGDVPWKMFVET 178
+ L+ F T ++ A++++ EYV TYEDKDGDWMLVGDVPW+MF ++
Sbjct: 184 DMSLGLEKMFIGFSTGKEGAENQKD-------GEYVLTYEDKDGDWMLVGDVPWEMFTDS 236
Query: 179 CQRLRLMKSSEAVNLAPRAAQ 199
C+RLR+MK S+A+ LAPRA +
Sbjct: 237 CRRLRIMKGSDAIGLAPRAGE 257
>Os05g0559400 Similar to IAA11 (Fragment)
Length = 281
Score = 134 bits (336), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 89/147 (60%), Gaps = 25/147 (17%)
Query: 76 RVVGWPPVRSFRKNALAAK-----------------FVKVAVDGAPYLRKVDLEAYSGYD 118
+VVGWPPVRS+RKN LAA +VKV++DGAPYLRKVDL+ YS Y+
Sbjct: 127 QVVGWPPVRSYRKNTLAASATKTKGEDQGKSEVGCCYVKVSMDGAPYLRKVDLKTYSSYE 186
Query: 119 QLLRALQDKFFSHFTIRKFADDERKL--------VDAVNGTEYVPTYEDKDGDWMLVGDV 170
L AL+ F T R + K DA+ EYV TYEDKD DWMLVGD+
Sbjct: 187 DLSLALEKMFSCFITGRSSSHKTSKRDRLTDGSRADALKDQEYVLTYEDKDADWMLVGDL 246
Query: 171 PWKMFVETCQRLRLMKSSEAVNLAPRA 197
PW +F +C++LR+M+ S+A +APR+
Sbjct: 247 PWDLFTTSCRKLRIMRGSDAAGMAPRS 273
>Os01g0675700 Similar to Auxin-responsive protein IAA14 (Indoleacetic
acid-induced protein 14) (SOLITARY-ROOT protein)
Length = 271
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 95/150 (63%), Gaps = 27/150 (18%)
Query: 76 RVVGWPPVRSFRKNALAAK-----------------FVKVAVDGAPYLRKVDLEAYSGYD 118
+VVGWPPVR++RKN LAA +VKV++DGAPYLRKVDL+ YS Y+
Sbjct: 117 QVVGWPPVRNYRKNTLAASASKGKGEDKGTAEGGPLYVKVSMDGAPYLRKVDLKMYSSYE 176
Query: 119 QLLRALQDKFFSHFT-----IRKFADDER----KLVDAVNGTEYVPTYEDKDGDWMLVGD 169
L AL+ K FS F +RK ++ +R DA+ EYV TYEDKD DWMLVGD
Sbjct: 177 DLSMALE-KMFSCFITGQSGLRKSSNRDRLTNGSKADALQDQEYVLTYEDKDADWMLVGD 235
Query: 170 VPWKMFVETCQRLRLMKSSEAVNLAPRAAQ 199
+PW +F C++L++M+ S+A +APR+ +
Sbjct: 236 LPWDLFTTICRKLKIMRGSDAAGIAPRSIE 265
>Os12g0601400 Similar to Auxin-responsive protein (Aux/IAA) (Fragment)
Length = 197
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/148 (45%), Positives = 85/148 (57%), Gaps = 36/148 (24%)
Query: 76 RVVGWPPVRSFRKNAL-----------------------------AAKFVKVAVDGAPYL 106
+VVGWPPVRS+RK+ L FVKV++DGAPYL
Sbjct: 53 QVVGWPPVRSYRKSCLQPTTTTTKSKPPPAAAAAETQQKEDVAGAGGLFVKVSMDGAPYL 112
Query: 107 RKVDLEAYSGYDQLLRALQDKFFSHFTIRKFADDERKLVDAVNGTEYVPTYEDKDGDWML 166
RK+DL+ Y GY +L AL+ F F+ AD AVN +++ TYEDKDGD ML
Sbjct: 113 RKIDLKVYKGYRELREALEAMFLC-FSGGAAADA------AVNPSDFAVTYEDKDGDLML 165
Query: 167 VGDVPWKMFVETCQRLRLMKSSEAVNLA 194
VGDVP++MF+ TC+RLR+MK SEA L
Sbjct: 166 VGDVPFEMFISTCKRLRIMKGSEARGLG 193
>Os07g0182400 AUX/IAA protein family protein
Length = 219
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 76/139 (54%), Gaps = 32/139 (23%)
Query: 76 RVVGWPPVRSFRKNALAAK------------------------FVKVAVDGAPYLRKVDL 111
+VVGWPPVR++R+N +VKV++DGAPYLRKVDL
Sbjct: 88 QVVGWPPVRAYRRNTFHQAAAAAAATKKGGDEKQKQQQQGGGLYVKVSMDGAPYLRKVDL 147
Query: 112 EAYSGYDQLLRALQDKFFSHFTIRKFADDERKLVDAVNGTEYVPTYEDKDGDWMLVGDVP 171
+ GY +L AL F F+ D + ++ YEDKDGD MLVGDVP
Sbjct: 148 KMCKGYRELREALDLLFTKCFSA--------TASDGCSDGQFAIAYEDKDGDLMLVGDVP 199
Query: 172 WKMFVETCQRLRLMKSSEA 190
W+MF+ +C++LR+MK SEA
Sbjct: 200 WEMFISSCKKLRIMKGSEA 218
>Os09g0527700 Similar to Auxin-induced protein IAA4
Length = 140
Score = 107 bits (266), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 74/117 (63%), Gaps = 12/117 (10%)
Query: 81 PPVRSFRKNALAAKFVKVAVDGAPYLRKVDLEAYSGYDQLLRALQDKFFSHFTIRKFADD 140
PP S + AA FVKV++DG PYLRKVD+ AY Y +L+ AL D F+ TI
Sbjct: 36 PPSSSMIQ---AAYFVKVSMDGTPYLRKVDVAAYGDYLELVEALNDMFYCS-TI------ 85
Query: 141 ERKLVDAVNGTEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAVNLAPRA 197
L+D E+ YED DGDWMLVGDVPW+MFV +C+R+R+M++ EA L+ A
Sbjct: 86 --GLMDGYGEWEHAVVYEDGDGDWMLVGDVPWEMFVSSCKRMRVMRACEARGLSSNA 140
>Os03g0633800 Similar to IAA6 (Fragment)
Length = 226
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 78/163 (47%), Gaps = 52/163 (31%)
Query: 76 RVVGWPPVRSFRKNAL-----------------------------------------AAK 94
+VVGWPPVRS+RK+
Sbjct: 70 QVVGWPPVRSYRKSCFQQQSAAASKSKAAVSSCNNKDEPITKNAAPAPAASSAAAANGGS 129
Query: 95 FVKVAVDGAPYLRKVDLEAYSGYDQLLRALQDKFFSHFTIRKFADDERKLVDAVNGTEYV 154
VKV++DGAPYLRK+DL Y GY +L AL+ F D N +E+
Sbjct: 130 LVKVSMDGAPYLRKIDLRMYKGYRELREALEAMFVCF----------SGAADGANPSEFA 179
Query: 155 PTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAVNL-APR 196
TY+DKDGD MLVGDVP+ MF TC++LR+MK SEA L +PR
Sbjct: 180 ITYQDKDGDLMLVGDVPFDMFTSTCKKLRIMKRSEATGLGSPR 222
>Os02g0817600 AUX/IAA protein family protein
Length = 280
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 81/158 (51%), Gaps = 41/158 (25%)
Query: 77 VVGWPPVRSFRKNAL-----------------------------------AAKFVKVAVD 101
VVGWPP+R FR N+L A +VKV +D
Sbjct: 111 VVGWPPIRQFRMNSLFNQAKENTSETDTKKTATNESDVQKDKEEGEKKGRVAGWVKVNMD 170
Query: 102 GAPYLRKVDLEAYSGYDQLLRALQDKFFSHFTIRKFAD---DERKLVDAVNGTEYVPTYE 158
G RKVDL A+ Y L AL+ F+ +I A + KL+D N EY TYE
Sbjct: 171 GEVIGRKVDLNAHRSYKTLALALE-LMFTKPSIGLCASHNTNSLKLLD--NSAEYQLTYE 227
Query: 159 DKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAVNLAPR 196
D+DGDWMLVGDVPW+MFV + +RLR+M++S+A L R
Sbjct: 228 DRDGDWMLVGDVPWEMFVSSVKRLRIMRTSDANGLGQR 265
>Os03g0797800 AUX/IAA protein family protein
Length = 197
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 73/142 (51%), Gaps = 38/142 (26%)
Query: 76 RVVGWPPVRSFR---------------------------KNALAAKFVKVAVDGAPYLRK 108
+VVGWPPV S+R KN +VKV++DGAPYLRK
Sbjct: 66 QVVGWPPVGSYRRSTFQSSSSSTAAAAKGKGGGETDQGRKNKGGGLYVKVSMDGAPYLRK 125
Query: 109 VDLEAYSGYDQLLRALQDKFFSHFTIRKFADDERKLVDAVNGTEYVPTYEDKDGDWMLVG 168
VDL Y GY +L AL D F F+ + + + YEDKDGD ML G
Sbjct: 126 VDLRMYGGYRELRDAL-DALFGCFSADA----------SASAAHFAVAYEDKDGDLMLAG 174
Query: 169 DVPWKMFVETCQRLRLMKSSEA 190
DVPW MF+ +C++LR+M+ SEA
Sbjct: 175 DVPWDMFISSCKKLRIMRGSEA 196
>Os01g0741900 Similar to Auxin-responsive protein IAA26 (Indoleacetic
acid-induced protein 26) (Phytochrome-associated protein
1)
Length = 335
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 79/148 (53%), Gaps = 35/148 (23%)
Query: 77 VVGWPPVRSFRKN----------------------ALAAK---FVKVAVDGAPYLRKVDL 111
VVGWPP+RSFR+N L K VK+ +DG P RK+DL
Sbjct: 176 VVGWPPIRSFRRNLASSSSSKHSPEPQNDNANAKVTLTCKKNPLVKINMDGIPIGRKIDL 235
Query: 112 EAYSGYDQLLRALQDKFF---------SHFTIRKFADDERKLVDAVNGT-EYVPTYEDKD 161
AY+ YD L A++ F ++ I + D++ ++G+ EY YED +
Sbjct: 236 AAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSGEYTLVYEDSE 295
Query: 162 GDWMLVGDVPWKMFVETCQRLRLMKSSE 189
GD MLVGDVPWK+FV T +RLR+++SSE
Sbjct: 296 GDRMLVGDVPWKVFVSTAKRLRVLRSSE 323
>Os01g0190300 Similar to Auxin-responsive protein IAA26 (Indoleacetic
acid-induced protein 26) (Phytochrome-associated protein
1)
Length = 238
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 71/146 (48%), Gaps = 37/146 (25%)
Query: 80 WPPVRSFRKN-------------------------------ALAAKFVKVAVDGAPYLRK 108
WPPVRSFR+N A FVK+ +DG P RK
Sbjct: 74 WPPVRSFRRNLASSSSSSSKQAPPPPSSSPQNGDKASKDGGAEKGMFVKINMDGVPIGRK 133
Query: 109 VDLEAYSGYDQLLRALQDKFF-----SHFTIRKFADDERKLVDAVNGTEYVPTYEDKDGD 163
VDL AY GY QL A+ DK F + D + V G EY YED +GD
Sbjct: 134 VDLAAYGGYAQLSAAV-DKLFRGLLAAQSAAADGEADAAAAGEMVGGGEYTLVYEDDEGD 192
Query: 164 WMLVGDVPWKMFVETCQRLRLMKSSE 189
MLVGDVPW+MF+ T +RLR++KSS+
Sbjct: 193 RMLVGDVPWQMFIATAKRLRVLKSSD 218
>Os02g0805100 Similar to Auxin-responsive protein IAA12 (Indoleacetic
acid-induced protein 12) (BODENLOS protein)
Length = 182
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 64/111 (57%), Gaps = 7/111 (6%)
Query: 77 VVGWPPVRSFRKNALAAKFVKVAVDGAPYLRKVDLEAYSGYDQLLRALQDKFFS--HFTI 134
VVGWPPV S R+ A +VKV +G RKVDL +S YD+L L F + H
Sbjct: 76 VVGWPPVSSARRACGGANYVKVKKEGDAIGRKVDLALHSSYDELAATLARMFPTNDHQGE 135
Query: 135 RKFADDERKLVDAVNGTEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLM 185
+K A+D D + V TYED DGDWMLVGDVPW F + +RL+++
Sbjct: 136 KKMAND-----DHGDAAGPVVTYEDGDGDWMLVGDVPWDDFARSVKRLKIL 181
>Os05g0523300 Similar to IAA8 (Fragment)
Length = 327
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 73/154 (47%), Gaps = 47/154 (30%)
Query: 77 VVGWPPVRSFRKNALAAK-------------------------FVKVAVDGAPYLRKVDL 111
VVGWPP+RSFR+N VK+ +DG P RKVDL
Sbjct: 168 VVGWPPIRSFRRNLTNGSSFKQSPERQNDEADDKAKPICKKRPLVKINMDGIPIGRKVDL 227
Query: 112 EAYSGYDQLLRALQDKFFSHFTIRKFADDERKLVDAVNGTE----------------YVP 155
+ Y Y +L A+++ F R F + ++ L A +G + Y
Sbjct: 228 QIYDSYQKLSSAVEELF------RGFLEAQKDLSCAESGEQGAEDKIFSGLLDGTGVYTL 281
Query: 156 TYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSE 189
YED DGD ML GD+PWK+FV T +RLR+M+ SE
Sbjct: 282 VYEDNDGDRMLAGDIPWKVFVSTVKRLRVMRRSE 315
>Os02g0228900 Similar to Auxin-responsive protein IAA18 (Indoleacetic
acid-induced protein 18)
Length = 300
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 80/146 (54%), Gaps = 34/146 (23%)
Query: 77 VVGWPPVRSFRKN-ALAAK---------------------FVKVAVDGAPYLRKVDLEAY 114
VVGWPPVR+FR+N A ++K F+K+ +DG P RK+DL A+
Sbjct: 139 VVGWPPVRTFRRNLATSSKASLELQNGKKAAKAEEIKRAPFIKINMDGVPIGRKIDLNAF 198
Query: 115 SGYDQLLRALQDKFFSHF------TIRKFADDERKLVDAVNG-----TEYVPTYEDKDGD 163
Y++L A+ DK F + A D ++ A++G EY YED +GD
Sbjct: 199 DSYEKLSLAV-DKLFRGLLAAQRDPLTAGAKDCQQEDVAISGLLDGTGEYTLVYEDYEGD 257
Query: 164 WMLVGDVPWKMFVETCQRLRLMKSSE 189
+LVGDVPW MFV + +RLR++K+S+
Sbjct: 258 KVLVGDVPWGMFVSSVKRLRVLKTSD 283
>Os08g0109400 AUX/IAA protein family protein
Length = 246
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 71/143 (49%), Gaps = 37/143 (25%)
Query: 76 RVVGWPPVRSFRKNALAAK----------------------------------FVKVAVD 101
++VGWPPVR+FRKN K FVKV ++
Sbjct: 92 QLVGWPPVRAFRKNLSTPKPADADDLMNKVKLCSDEGHGSRCAAQERRSSSTMFVKVNLE 151
Query: 102 GAPYLRKVDLEAYSGYDQLLRALQDKFFSHFTIRKFA--DDERKLVDAVNGTEYVPTYED 159
G RK+DL+A+ YD L +ALQ F F A D+E + ++ + YV YED
Sbjct: 152 GYAVGRKIDLKAHRSYDSLSQALQ-SMFHGFLSDGIATRDNELQQMEEGSKKRYVLVYED 210
Query: 160 KDGDWMLVGDVPWKMFVETCQRL 182
+GD MLVGDVPW++F+ + +RL
Sbjct: 211 NEGDRMLVGDVPWELFIASVKRL 233
>Os02g0723400 AUX/IAA protein family protein
Length = 205
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 57/97 (58%), Gaps = 8/97 (8%)
Query: 95 FVKVAVDGAPYLRKVDLEAYSGYDQLLRALQDKFFS----HFTIRKFADDERKLVDAVNG 150
FVKV ++G P RK+DL GY L+ L F + H R+FA K N
Sbjct: 105 FVKVYMEGVPIGRKLDLLPLDGYKGLVARLASMFRASITYHHCHRQFAVVGMK----TNK 160
Query: 151 TEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKS 187
+V TYED++GDWM+ GDVPW++F+ + +RLR+ ++
Sbjct: 161 VHHVLTYEDQEGDWMMAGDVPWELFLTSVKRLRIARA 197
>Os06g0166500 Similar to Auxin-responsive protein IAA20 (Indoleacetic
acid-induced protein 20)
Length = 183
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 61/113 (53%), Gaps = 11/113 (9%)
Query: 76 RVVGWPPVRSFRKNALAAK---FVKVAVDGAPYLRKVDLEAYSGYDQLLRALQDKFFSHF 132
++VGWPPV+ + +VKV ++G RK+DL Y +LL L F S
Sbjct: 78 KLVGWPPVKCLHRRRDGGCGGGYVKVKMEGLAIGRKLDLSILGSYAELLDTLHLMFPS-- 135
Query: 133 TIRKFADDERKLVDAVNGTEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLM 185
T ++ D R+ Y TYED +GDWM VGDVPW+ F ++ +RL+++
Sbjct: 136 TNQEDGHDRRRR------HPYAVTYEDGEGDWMQVGDVPWEAFAKSVKRLKIL 182
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.138 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,616,419
Number of extensions: 155505
Number of successful extensions: 431
Number of sequences better than 1.0e-10: 25
Number of HSP's gapped: 402
Number of HSP's successfully gapped: 25
Length of query: 199
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 103
Effective length of database: 12,023,257
Effective search space: 1238395471
Effective search space used: 1238395471
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)