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Os08g0109400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : AUX/IAA protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.5 (0.0262) R2 : 0.752
β1 : 0.832 (0.0959) R2dD : 0.0425 R2D : 0.0509
β2 : 2.27 (0.0631) R2dC : 0.701 R2C : 0.708
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.035 (0.0559) R2dN8 : 0.000286 R2N8 : 0.000642
σ : 0.492
deviance : 110.44
__
_____
C
peak time of C : 1.75
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
87 0.438 10.5 0.548 2.31 -0.539 -0.775 -3.1 -0.0342 1.7 37.38 3445 -- --
96.46 0.457 10.5 0.866 2.18 -0.694 -0.515 -- 0.0747 1.56 30 1838 -- --
89.25 0.44 10.5 0.591 2.31 -0.574 -- -2.94 -0.0232 1.71 38.69 3454 -- --
97.62 0.46 10.5 0.875 2.18 -0.706 -- -- 0.0821 1.6 30.07 1839 -- --
253.54 0.746 10.5 0.895 -- -2.28 -- 0.706 -0.0134 -- -4.656e-05 4753 -- --
108.82 0.489 10.5 0.811 2.27 -- -0.643 -- -0.0386 1.74 -- -- -- --
110.44 0.492 10.5 0.832 2.27 -- -- -- -0.035 1.75 -- -- -- --
159.38 0.588 10.5 0.954 -- -2.69 -- -- 0.165 -- -58.8 268 -- --
114.24 0.498 10.5 -- 2.26 -0.759 -- -- 0.0687 1.72 27.06 7619 -- --
422.29 0.96 10.5 0.924 -- -- -- -- 0.0161 -- -- -- -- --
128.67 0.531 10.6 -- 2.28 -- -- -- -0.128 1.76 -- -- -- --
183.4 0.631 10.5 -- -- -2.67 -- -- 0.0582 -- -30.23 266 -- --
444.81 0.984 10.5 -- -- -- -- -- -0.0864 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 83.90 temperature 10 270 > th dose dependent rect. 2 14
5 85.58 temperature 30 270 < th dose independent rect. 7 14
13 86.29 temperature 20 270 > th dose dependent rect. 11 5
16 86.68 radiation 30 270 < th dose dependent rect. 6 21
18 86.71 temperature 20 270 > th dose dependent rect. 10 7
19 86.72 radiation 40 270 < th dose dependent rect. 7 15
20 86.73 humidity 70 270 > th dose independent rect. 7 14
25 87.01 temperature 30 270 < th dose independent rect. 15 21
26 87.02 temperature 10 30 > th dose dependent rect. 5 14
29 87.12 humidity 70 270 < th dose independent rect. 11 6
31 87.23 radiation 1 270 > th dose dependent rect. 11 21
33 87.25 radiation 30 270 < th dose dependent rect. 7 19
34 87.30 radiation 40 270 < th dose dependent sin 18 NA
35 87.31 wind 1 90 > th dose dependent rect. 12 7
42 87.39 radiation 10 4320 < th dose dependent rect. 17 15
50 87.53 radiation 40 4320 > th dose dependent rect. 13 21
52 87.55 radiation 40 4320 < th dose independent rect. 14 20
59 87.67 radiation 10 4320 < th dose dependent rect. 17 19
60 87.69 radiation 10 4320 < th dose dependent sin 11 NA
62 87.70 radiation 40 4320 > th dose dependent sin 12 NA
64 87.75 humidity 90 270 < th dose dependent rect. 11 6
71 87.80 radiation 1 270 > th dose independent rect. 10 21
80 87.85 radiation 1 90 > th dose independent rect. 12 18
82 87.87 humidity 50 270 > th dose dependent rect. 7 14
83 87.88 radiation 1 270 > th dose dependent sin 17 NA
85 87.89 wind 3 90 > th dose independent rect. 12 7
112 88.03 radiation 40 4320 < th dose dependent rect. 19 11
120 88.08 humidity 50 270 > th dose dependent rect. 21 10
126 88.11 radiation 40 10 < th dose dependent sin 13 NA
128 88.13 radiation 40 4320 < th dose dependent rect. 3 3
136 88.16 radiation 1 4320 > th dose dependent rect. 16 17
145 88.22 radiation 40 4320 < th dose dependent rect. 1 5
150 88.22 radiation 1 4320 > th dose dependent rect. 17 15
152 88.24 radiation 40 4320 < th dose independent sin 12 NA
156 88.26 radiation 40 270 < th dose independent rect. 7 15
163 88.29 radiation 1 270 > th dose dependent rect. 11 7
166 88.30 radiation 1 4320 > th dose dependent sin 11 NA
187 88.34 radiation 10 4320 < th dose dependent rect. 3 5
188 88.34 radiation 10 4320 < th dose dependent rect. 1 7
193 88.35 temperature 30 270 < th dose dependent rect. 7 14
196 88.37 radiation 20 270 < th dose independent rect. 7 15
198 88.37 radiation 10 4320 < th dose dependent rect. 21 11
211 88.40 radiation 20 270 < th dose independent rect. 7 18
277 88.56 radiation 40 4320 > th dose dependent rect. 13 2
336 88.64 temperature 10 270 > th dose dependent rect. 10 21
338 88.65 radiation 40 4320 > th dose independent rect. 14 20
345 88.66 temperature 30 90 < th dose independent rect. 6 23
422 88.78 radiation 1 4320 > th dose independent rect. 18 13
429 88.80 temperature 15 270 > th dose dependent sin 23 NA
437 88.82 radiation 10 270 > th dose independent rect. 12 4
438 88.82 radiation 1 4320 < th dose independent rect. 18 13
442 88.83 radiation 10 4320 < th dose dependent rect. 3 9
443 88.83 radiation 10 4320 < th dose dependent rect. 1 11
445 88.84 radiation 30 270 < th dose independent sin 16 NA
455 88.85 radiation 10 4320 < th dose dependent rect. 22 14
483 88.92 radiation 1 4320 > th dose dependent rect. 4 4
530 88.96 radiation 40 4320 < th dose independent rect. 19 15
533 88.97 radiation 40 4320 < th dose independent rect. 3 7
534 88.97 radiation 40 4320 < th dose independent rect. 1 9
549 89.00 radiation 40 4320 < th dose independent rect. 6 4
584 89.06 radiation 10 4320 < th dose independent rect. 16 19
588 89.07 radiation 20 270 < th dose independent rect. 6 21
605 89.10 radiation 10 4320 < th dose independent rect. 16 17
608 89.11 radiation 1 90 < th dose independent sin 15 NA
649 89.15 radiation 1 90 < th dose dependent sin 15 NA
658 89.17 radiation 1 4320 > th dose dependent rect. 5 1
672 89.18 radiation 40 4320 > th dose dependent rect. 9 1
674 89.19 radiation 40 4320 > th dose independent sin 12 NA
694 89.23 radiation 10 4320 < th dose independent sin 11 NA
695 89.23 radiation 40 4320 > th dose dependent rect. 7 3
742 89.28 temperature 10 270 > th dose dependent rect. 11 12
776 89.32 temperature 25 270 > th dose dependent rect. 20 21
781 89.34 humidity 70 270 > th dose independent rect. 6 21
840 89.46 radiation 20 4320 < th dose independent rect. 19 14
841 89.46 radiation 40 4320 > th dose dependent no NA NA
842 89.46 radiation 40 4320 > th dose dependent rect. 8 7
982 89.47 radiation 20 4320 < th dose independent rect. 4 5