BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0610400 Os04g0610400|Os04g0610400
(222 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0610400 Similar to AP2 domain containing protein RAP2.... 159 2e-39
Os01g0797600 Ethylene responsive element binding factor3 (O... 79 2e-15
Os05g0497300 Similar to Ethylene response factor 2 79 4e-15
Os02g0189600 Similar to Ethylene response factor 2 (Ethylen... 78 5e-15
Os01g0224100 Similar to DNA binding protein-like protein 77 8e-15
Os04g0669200 Similar to Ethylene response factor 2 (Ethylen... 76 2e-14
Os01g0657400 Similar to Ethylene-responsive transcription f... 72 2e-13
Os05g0497200 Similar to Ethylene-responsive transcription f... 72 4e-13
Os12g0168100 Similar to AP2 domain containing protein RAP2.... 71 7e-13
Os06g0691100 Pathogenesis-related transcriptional factor an... 70 8e-13
Os04g0398000 Pathogenesis-related transcriptional factor an... 70 1e-12
Os06g0160500 69 2e-12
Os10g0562900 Pathogenesis-related transcriptional factor an... 69 2e-12
Os07g0669500 Similar to Branched silkless1 69 2e-12
Os04g0399800 Similar to Ethylene-responsive transcription f... 69 4e-12
Os02g0520000 68 5e-12
Os02g0594300 Similar to Enhancer of shoot regeneration ESR1 68 5e-12
Os09g0457900 Similar to AP2 domain containing protein RAP2.... 68 6e-12
Os03g0815800 Similar to Ethylene-responsive transcription f... 67 1e-11
Os02g0764700 Similar to Ethylene-responsive transcription f... 67 1e-11
Os04g0429050 67 1e-11
Os08g0474000 Similar to AP2 domain containing protein RAP2.... 66 2e-11
Os09g0287000 Similar to Ethylene-responsive transcription f... 64 6e-11
Os07g0617000 Similar to Ethylene response factor 2 64 6e-11
Os03g0183000 Similar to AP2 domain containing protein RAP2.... 64 9e-11
Os02g0158000 Similar to Ethylene response factor 2 (Ethylen... 64 9e-11
Os10g0390800 Similar to Ethylene-responsive transcription f... 64 1e-10
>Os04g0610400 Similar to AP2 domain containing protein RAP2.6 (Fragment)
Length = 222
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 99/222 (44%)
Query: 1 MAPRNXXXXXXXXXXXXXXXXMEPRFRGVRKRPWGRYAAEIRDPARKARVWLGTFDTXXX 60
MAPRN MEPRFRGVRKRPWGRYAAEIRDPARKARVWLGTFDT
Sbjct: 1 MAPRNAAEAVAVAVAEGGGAGMEPRFRGVRKRPWGRYAAEIRDPARKARVWLGTFDTAEA 60
Query: 61 XXXXXXXXXLHFRGPKAKTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDT 120
LHFRGPKAKTN RDT
Sbjct: 61 AARAYDSAALHFRGPKAKTNFPVAFAHAHHHAPPPPLPKAAALAVVSPTSSTVESSSRDT 120
Query: 121 XXXXXXXXXXXXXXXXXXXLDLSLGMSAMVAAQPFLFLDXXXXXXXXXXXXXXXXXXXXS 180
LDLSLGMSAMVAAQPFLFLD S
Sbjct: 121 PAAAPVAAAAKAQVPASPSLDLSLGMSAMVAAQPFLFLDPRVAVTVAVAAPVPRRPAVVS 180
Query: 181 VKKEVARLDEQXXXXXXXXXXXXXXXXXXXLDLNLPPPIEEA 222
VKKEVARLDEQ LDLNLPPPIEEA
Sbjct: 181 VKKEVARLDEQSDTGSSSSVVDASPAVGVGLDLNLPPPIEEA 222
>Os01g0797600 Ethylene responsive element binding factor3 (OsERF3)
Length = 235
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/57 (64%), Positives = 41/57 (71%)
Query: 24 PRFRGVRKRPWGRYAAEIRDPARKARVWLGTFDTXXXXXXXXXXXXLHFRGPKAKTN 80
P +RGVRKRPWGRYAAEIRDPA+K+RVWLGT+DT FRG KAKTN
Sbjct: 32 PHYRGVRKRPWGRYAAEIRDPAKKSRVWLGTYDTAEEAARAYDAAAREFRGAKAKTN 88
>Os05g0497300 Similar to Ethylene response factor 2
Length = 236
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 40/56 (71%)
Query: 25 RFRGVRKRPWGRYAAEIRDPARKARVWLGTFDTXXXXXXXXXXXXLHFRGPKAKTN 80
FRGVRKRPWGRYAAEIRDPA+K+RVWLGTFDT +RG KAKTN
Sbjct: 37 HFRGVRKRPWGRYAAEIRDPAKKSRVWLGTFDTAEEAARAYDAAAREYRGAKAKTN 92
>Os02g0189600 Similar to Ethylene response factor 2 (Ethylene response factor
3)
Length = 199
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 40/56 (71%)
Query: 25 RFRGVRKRPWGRYAAEIRDPARKARVWLGTFDTXXXXXXXXXXXXLHFRGPKAKTN 80
RFRGVRKRPWGRYAAEIRDPA+KARVWLGT+D+ RG KAKTN
Sbjct: 15 RFRGVRKRPWGRYAAEIRDPAKKARVWLGTYDSAEDAARAYDAAARALRGAKAKTN 70
>Os01g0224100 Similar to DNA binding protein-like protein
Length = 380
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 39/58 (67%)
Query: 23 EPRFRGVRKRPWGRYAAEIRDPARKARVWLGTFDTXXXXXXXXXXXXLHFRGPKAKTN 80
EPRFRGVR+RPWG+YAAEIRDP R+ RVWLGTFDT + RG A TN
Sbjct: 147 EPRFRGVRRRPWGKYAAEIRDPWRRVRVWLGTFDTAEEAAKVYDTAAIQLRGRDATTN 204
>Os04g0669200 Similar to Ethylene response factor 2 (Ethylene response factor
3)
Length = 190
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 42/57 (73%)
Query: 24 PRFRGVRKRPWGRYAAEIRDPARKARVWLGTFDTXXXXXXXXXXXXLHFRGPKAKTN 80
PR+RGVRKRPWGR+AAEIRDPA++ARVWLGT+D+ + RGP A+TN
Sbjct: 13 PRYRGVRKRPWGRFAAEIRDPAKRARVWLGTYDSAEAAARAYDVAARNLRGPLARTN 69
>Os01g0657400 Similar to Ethylene-responsive transcription factor 5
(Ethylene-responsive element binding factor 5) (EREBP-5)
(AtERF5)
Length = 292
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 37/56 (66%)
Query: 25 RFRGVRKRPWGRYAAEIRDPARKARVWLGTFDTXXXXXXXXXXXXLHFRGPKAKTN 80
+FRGVR+RPWG++AAEIRDP R RVWLGTFDT + RGP A TN
Sbjct: 95 KFRGVRRRPWGKFAAEIRDPWRGVRVWLGTFDTAEEAARVYDNAAIQLRGPSATTN 150
>Os05g0497200 Similar to Ethylene-responsive transcription factor 11
(Ethylene-responsive element binding factor 11)
(EREBP-11) (AtERF11)
Length = 189
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 39/58 (67%)
Query: 23 EPRFRGVRKRPWGRYAAEIRDPARKARVWLGTFDTXXXXXXXXXXXXLHFRGPKAKTN 80
E +RGVRKRPWGRYAAEIRDP +K RVWLGT+DT + RG KA+TN
Sbjct: 20 EAHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTYDTPVEAALAYDRAAVALRGVKARTN 77
>Os12g0168100 Similar to AP2 domain containing protein RAP2.6 (Fragment)
Length = 341
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 39/56 (69%)
Query: 25 RFRGVRKRPWGRYAAEIRDPARKARVWLGTFDTXXXXXXXXXXXXLHFRGPKAKTN 80
R+RGVR+RPWG++AAEIRDP + ARVWLGTFDT L FRG +AK N
Sbjct: 155 RYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEDAARAYDGAALRFRGSRAKLN 210
>Os06g0691100 Pathogenesis-related transcriptional factor and ERF domain
containing protein
Length = 188
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 38/58 (65%)
Query: 23 EPRFRGVRKRPWGRYAAEIRDPARKARVWLGTFDTXXXXXXXXXXXXLHFRGPKAKTN 80
E R+RGVRKRP GRYAAEIRDPA+K +WLGTFD+ RGP A+TN
Sbjct: 14 EIRYRGVRKRPSGRYAAEIRDPAKKTPIWLGTFDSAEVAARAYDDAARSLRGPTARTN 71
>Os04g0398000 Pathogenesis-related transcriptional factor and ERF domain
containing protein
Length = 268
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 38/56 (67%)
Query: 25 RFRGVRKRPWGRYAAEIRDPARKARVWLGTFDTXXXXXXXXXXXXLHFRGPKAKTN 80
+RGVR+RPWG++AAEIRDP + ARVWLGTFDT L F+G KAK N
Sbjct: 66 HYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAAIAYDEAALRFKGTKAKLN 121
>Os06g0160500
Length = 342
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 36/58 (62%)
Query: 23 EPRFRGVRKRPWGRYAAEIRDPARKARVWLGTFDTXXXXXXXXXXXXLHFRGPKAKTN 80
E +FRGVRKRPWG+Y AEIR + ARVWLGTFDT L RGP A TN
Sbjct: 118 ERKFRGVRKRPWGKYGAEIRVSQQSARVWLGTFDTAEEAARVYDHAALRLRGPSATTN 175
>Os10g0562900 Pathogenesis-related transcriptional factor and ERF domain
containing protein
Length = 273
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 25 RFRGVRKRPWGRYAAEIRDPARK-ARVWLGTFDTXXXXXXXXXXXXLHFRGPKAKTN 80
R+RGVR+RPWG+YAAEIRDPARK ARVWLGT+DT RG KA N
Sbjct: 89 RYRGVRQRPWGKYAAEIRDPARKGARVWLGTYDTAVEAARAYDRAAFQLRGSKAILN 145
>Os07g0669500 Similar to Branched silkless1
Length = 318
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 36/56 (64%)
Query: 25 RFRGVRKRPWGRYAAEIRDPARKARVWLGTFDTXXXXXXXXXXXXLHFRGPKAKTN 80
RF GVR+RPWGRYAAEIRDP K R WLGTFDT L +G +A+TN
Sbjct: 57 RFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGAQARTN 112
>Os04g0399800 Similar to Ethylene-responsive transcription factor 12
(Ethylene-responsive element binding factor 12)
(EREBP-12) (AtERF12)
Length = 292
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 37/58 (63%)
Query: 23 EPRFRGVRKRPWGRYAAEIRDPARKARVWLGTFDTXXXXXXXXXXXXLHFRGPKAKTN 80
+ R+ GVR+RPWGRYAAEIRDPA K R WLGTFDT RG +A+TN
Sbjct: 49 QTRYLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAEEAAVAYDRAARSLRGARARTN 106
>Os02g0520000
Length = 239
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 36/58 (62%)
Query: 23 EPRFRGVRKRPWGRYAAEIRDPARKARVWLGTFDTXXXXXXXXXXXXLHFRGPKAKTN 80
E R+ GVR+RPWGRYAAEIRDPA K R WLGTFDT RG A+TN
Sbjct: 37 EARYLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAEEAAVAYDRAARTIRGAAARTN 94
>Os02g0594300 Similar to Enhancer of shoot regeneration ESR1
Length = 345
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 37/56 (66%)
Query: 25 RFRGVRKRPWGRYAAEIRDPARKARVWLGTFDTXXXXXXXXXXXXLHFRGPKAKTN 80
R+RGVR+RPWGR+AAEIRDPA K R WLGTFDT RG +A+TN
Sbjct: 58 RYRGVRRRPWGRFAAEIRDPASKERRWLGTFDTAEQAACAYDVAARAMRGTRARTN 113
>Os09g0457900 Similar to AP2 domain containing protein RAP2.6 (Fragment)
Length = 274
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 35/55 (63%)
Query: 26 FRGVRKRPWGRYAAEIRDPARKARVWLGTFDTXXXXXXXXXXXXLHFRGPKAKTN 80
+RGVR RPWG++AAEIRDP R R WLGTFDT L FRG +AK N
Sbjct: 130 YRGVRHRPWGKWAAEIRDPRRAVRKWLGTFDTAEEAARAYDRAALEFRGARAKLN 184
>Os03g0815800 Similar to Ethylene-responsive transcription factor 5
(Ethylene-responsive element binding factor 5) (EREBP-5)
(AtERF5)
Length = 241
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 36/56 (64%)
Query: 25 RFRGVRKRPWGRYAAEIRDPARKARVWLGTFDTXXXXXXXXXXXXLHFRGPKAKTN 80
RFRGVR+RPWGR+AAEIRDP + R+WLGTFDT + RG A TN
Sbjct: 81 RFRGVRQRPWGRFAAEIRDPHLRRRLWLGTFDTAEEAAAAYDAASVRLRGSSAATN 136
>Os02g0764700 Similar to Ethylene-responsive transcription factor 4
(Ethylene-responsive element binding factor 4) (Related
to APETALA-2 protein 5) (EREBP-4) (AtERF4)
Length = 242
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 36/56 (64%)
Query: 25 RFRGVRKRPWGRYAAEIRDPARKARVWLGTFDTXXXXXXXXXXXXLHFRGPKAKTN 80
R+RGVR+RPWG++AAEIRDP R WLGTFDT L FRG +AK N
Sbjct: 121 RYRGVRRRPWGKWAAEIRDPRRAVCKWLGTFDTAEDAARAYDVAALEFRGQRAKLN 176
>Os04g0429050
Length = 260
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 38/56 (67%)
Query: 25 RFRGVRKRPWGRYAAEIRDPARKARVWLGTFDTXXXXXXXXXXXXLHFRGPKAKTN 80
++RGVR+RPWG++AAEIRDP R ARVWLGTF T L FRG +A+ N
Sbjct: 78 KYRGVRRRPWGKWAAEIRDPHRAARVWLGTFATAEDAARAYDAAALRFRGGRARLN 133
>Os08g0474000 Similar to AP2 domain containing protein RAP2.6 (Fragment)
Length = 219
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 35/53 (66%)
Query: 28 GVRKRPWGRYAAEIRDPARKARVWLGTFDTXXXXXXXXXXXXLHFRGPKAKTN 80
GVR+RPWG++AAEIRDP R R WLGTFDT + FRGP+AK N
Sbjct: 78 GVRQRPWGKWAAEIRDPRRAVRKWLGTFDTAEEAARAYDRAAVEFRGPRAKLN 130
>Os09g0287000 Similar to Ethylene-responsive transcription factor 5
(Ethylene-responsive element binding factor 5) (EREBP-5)
(AtERF5)
Length = 250
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 34/53 (64%)
Query: 28 GVRKRPWGRYAAEIRDPARKARVWLGTFDTXXXXXXXXXXXXLHFRGPKAKTN 80
GVR+RPWGR+A+EIRDP + ARVWLGTFDT G KA+TN
Sbjct: 104 GVRQRPWGRWASEIRDPVKGARVWLGTFDTAVEAARAYDAEARRIHGHKARTN 156
>Os07g0617000 Similar to Ethylene response factor 2
Length = 342
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 35/56 (62%)
Query: 25 RFRGVRKRPWGRYAAEIRDPARKARVWLGTFDTXXXXXXXXXXXXLHFRGPKAKTN 80
R+RG+R+RPWG++AAEIRDP + RVWLGTF T RG KAK N
Sbjct: 111 RYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFGTAEEAAMAYDVEARRIRGKKAKVN 166
>Os03g0183000 Similar to AP2 domain containing protein RAP2.6 (Fragment)
Length = 334
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 35/56 (62%)
Query: 25 RFRGVRKRPWGRYAAEIRDPARKARVWLGTFDTXXXXXXXXXXXXLHFRGPKAKTN 80
FRG+R+RPWG++AAEIRDP + RVWLGTF+T RG KAK N
Sbjct: 110 HFRGIRQRPWGKWAAEIRDPHKGTRVWLGTFNTPEEAARAYDVEARRLRGSKAKVN 165
>Os02g0158000 Similar to Ethylene response factor 2 (Ethylene response factor
3)
Length = 203
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 37/58 (63%)
Query: 23 EPRFRGVRKRPWGRYAAEIRDPARKARVWLGTFDTXXXXXXXXXXXXLHFRGPKAKTN 80
E R+RGVR+RP GRYAAEIRDPA+K +WLGTFD+ RG A+TN
Sbjct: 10 EVRYRGVRRRPSGRYAAEIRDPAKKTPIWLGTFDSAEAAARAYDAAARSLRGAAARTN 67
>Os10g0390800 Similar to Ethylene-responsive transcription factor 3
(Ethylene-responsive element binding factor 3) (EREBP-3)
(AtERF3)
Length = 299
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 35/56 (62%)
Query: 25 RFRGVRKRPWGRYAAEIRDPARKARVWLGTFDTXXXXXXXXXXXXLHFRGPKAKTN 80
RFRGVRKRPWG++AAEIRDP R RVWLGTF T RG KAK N
Sbjct: 95 RFRGVRKRPWGKWAAEIRDPVRGVRVWLGTFPTAESAARAYDAAARRLRGAKAKPN 150
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.137 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,315,500
Number of extensions: 60436
Number of successful extensions: 243
Number of sequences better than 1.0e-10: 37
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 38
Length of query: 222
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 125
Effective length of database: 11,971,043
Effective search space: 1496380375
Effective search space used: 1496380375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)