Os07g0617000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ethylene response factor 2.
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Os07g0617000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ethylene response factor 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 257.56 | 0.754 | 8.7 | -0.965 | 0.879 | -2.15 | 1.77 | 0.0637 | -0.336 | 18.7 | 69.93 | 1116 | -- | -- |
| 257.57 | 0.747 | 8.7 | -0.971 | 0.879 | -2.15 | 1.78 | -- | -0.337 | 18.7 | 70 | 1115 | -- | -- |
| 263.97 | 0.757 | 8.69 | -0.982 | 0.852 | -2.06 | -- | 0.227 | -0.326 | 18 | 69.48 | 1134 | -- | -- |
| 263.35 | 0.756 | 8.69 | -1.01 | 0.755 | -1.99 | -- | -- | -0.329 | 17.4 | 69.58 | 1197 | -- | -- |
| 292.36 | 0.796 | 8.67 | -1.02 | -- | -2.07 | -- | -0.12 | -0.337 | -- | 69.62 | 1218 | -- | -- |
| 402.78 | 0.941 | 8.71 | -1.44 | 1.04 | -- | 0.3 | -- | -0.473 | 15.6 | -- | -- | -- | -- |
| 403.03 | 0.94 | 8.71 | -1.44 | 1.04 | -- | -- | -- | -0.472 | 15.6 | -- | -- | -- | -- |
| 292.38 | 0.796 | 8.67 | -1.01 | -- | -2.08 | -- | -- | -0.333 | -- | 69.49 | 1223 | -- | -- |
| 289.25 | 0.792 | 8.66 | -- | 0.765 | -2.14 | -- | -- | -0.207 | 17.6 | 69.77 | 1197 | -- | -- |
| 463.83 | 1.01 | 8.71 | -1.48 | -- | -- | -- | -- | -0.5 | -- | -- | -- | -- | -- |
| 457.31 | 1 | 8.68 | -- | 1.07 | -- | -- | -- | -0.312 | 15.5 | -- | -- | -- | -- |
| 318.33 | 0.831 | 8.65 | -- | -- | -2.23 | -- | -- | -0.213 | -- | 69.57 | 1223 | -- | -- |
| 521.52 | 1.07 | 8.67 | -- | -- | -- | -- | -- | -0.335 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 269.27 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 2 | 269.68 | humidity | 80 | 1440 | < th | dose dependent | rect. | 17 | 20 |
| 6 | 270.29 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 21 |
| 8 | 270.38 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 21 |
| 15 | 271.06 | humidity | 70 | 720 | > th | dose independent | sin | 11 | NA |
| 19 | 271.65 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 42 | 272.87 | humidity | 70 | 720 | < th | dose independent | sin | 11 | NA |
| 43 | 272.87 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 18 |
| 45 | 272.89 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 15 |
| 51 | 272.92 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 12 |
| 61 | 273.70 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 72 | 274.24 | humidity | 80 | 1440 | < th | dose dependent | rect. | 23 | 22 |
| 77 | 274.41 | humidity | 80 | 1440 | < th | dose dependent | rect. | 7 | 22 |
| 83 | 274.49 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 85 | 274.49 | humidity | 80 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 130 | 274.77 | humidity | 80 | 1440 | < th | dose dependent | rect. | 7 | 14 |
| 155 | 274.97 | humidity | 70 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 217 | 275.74 | humidity | 70 | 1440 | < th | dose independent | no | NA | NA |
| 285 | 276.03 | humidity | 50 | 1440 | > th | dose dependent | rect. | 6 | 15 |
| 339 | 276.81 | humidity | 70 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 345 | 276.87 | humidity | 70 | 1440 | < th | dose independent | sin | 19 | NA |
| 380 | 277.17 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 22 |
| 385 | 277.18 | humidity | 70 | 1440 | > th | dose independent | rect. | 22 | 22 |
| 389 | 277.19 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 393 | 277.20 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 18 |
| 436 | 277.40 | humidity | 90 | 1440 | < th | dose dependent | sin | 0 | NA |
| 473 | 277.87 | humidity | 50 | 1440 | > th | dose dependent | sin | 23 | NA |
| 530 | 278.62 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 549 | 278.85 | humidity | 80 | 720 | < th | dose dependent | rect. | 17 | 7 |
| 581 | 279.34 | humidity | 70 | 1440 | > th | dose independent | sin | 20 | NA |
| 590 | 279.47 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 613 | 279.59 | humidity | 80 | 720 | < th | dose dependent | sin | 11 | NA |
| 731 | 281.04 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 777 | 281.42 | humidity | 80 | 1440 | < th | dose dependent | sin | 9 | NA |
| 790 | 281.59 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 818 | 281.75 | humidity | 60 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 919 | 282.71 | humidity | 80 | 1440 | < th | dose dependent | rect. | 23 | 15 |
| 999 | 283.24 | humidity | 80 | 1440 | < th | dose dependent | rect. | 13 | 15 |