Os04g0398000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pathogenesis-related transcriptional factor and ERF domain containing protein.
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Os04g0398000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pathogenesis-related transcriptional factor and ERF domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 221.15 | 0.699 | 6.38 | 0.229 | 0.945 | 3.41 | 0.227 | 9.48 | 0.061 | 2.26 | 19.6 | 5577 | -- | -- |
| 240.14 | 0.727 | 6.17 | 0.229 | 0.955 | -0.455 | 0.0972 | -- | 0.0758 | 2.24 | 19.6 | 5577 | -- | -- |
| 221.29 | 0.693 | 6.38 | 0.262 | 0.945 | 3.65 | -- | 9.94 | 0.0635 | 2.31 | 19.45 | 5615 | -- | -- |
| 236.34 | 0.716 | 6.18 | -0.0526 | 0.926 | -0.676 | -- | -- | -0.00297 | 2.24 | 16.5 | 10507 | -- | -- |
| 274.15 | 0.771 | 6.38 | 0.325 | -- | 3.84 | -- | 10.4 | 0.0858 | -- | 19.21 | 5821 | -- | -- |
| 241.23 | 0.728 | 6.16 | 0.296 | 0.933 | -- | 0.134 | -- | 0.0999 | 2.26 | -- | -- | -- | -- |
| 241.3 | 0.727 | 6.16 | 0.292 | 0.934 | -- | -- | -- | 0.099 | 2.3 | -- | -- | -- | -- |
| 285.07 | 0.786 | 6.18 | -0.0962 | -- | -0.7 | -- | -- | 0.0101 | -- | 14.5 | 26878 | -- | -- |
| 235.14 | 0.714 | 6.18 | -- | 0.935 | -0.617 | -- | -- | 0.0136 | 2.28 | 15.1 | 20841 | -- | -- |
| 293.12 | 0.8 | 6.15 | 0.331 | -- | -- | -- | -- | 0.122 | -- | -- | -- | -- | -- |
| 243.54 | 0.73 | 6.17 | -- | 0.94 | -- | -- | -- | 0.0665 | 2.3 | -- | -- | -- | -- |
| 285.47 | 0.787 | 6.18 | -- | -- | -0.656 | -- | -- | 0.0118 | -- | 14.5 | 26859 | -- | -- |
| 296.01 | 0.803 | 6.16 | -- | -- | -- | -- | -- | 0.085 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 206.18 | wind | 9.0 | 30 | < th | dose independent | rect. | 23 | 23 |
| 2 | 206.96 | wind | 7.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 3 | 207.02 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 5 | 207.33 | humidity | 90.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 7 | 207.42 | radiation | 30.0 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 11 | 207.48 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 14 | 207.48 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 18 | 207.48 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 28 | 207.48 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 29 | 207.48 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 49 | 207.48 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 24 | 23 |
| 52 | 207.48 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 57 | 207.54 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 22 | 1 |
| 58 | 207.60 | temperature | 25.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 59 | 207.64 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 61 | 207.76 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 22 | 1 |
| 68 | 208.03 | wind | 5.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 71 | 208.07 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 22 | 1 |
| 72 | 208.07 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 73 | 208.08 | wind | 1.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 74 | 208.15 | wind | 1.0 | 30 | > th | dose dependent | rect. | 22 | 1 |
| 77 | 208.16 | temperature | 10.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 79 | 208.16 | temperature | 30.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 80 | 208.16 | humidity | 50.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 83 | 208.16 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 84 | 208.16 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 86 | 208.16 | radiation | 1.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 91 | 208.16 | temperature | 10.0 | 30 | > th | dose independent | rect. | 23 | 23 |
| 92 | 208.16 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 99 | 208.20 | wind | 9.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 106 | 208.37 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 22 | 1 |
| 109 | 208.60 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 111 | 208.73 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 126 | 209.69 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 23 | 23 |
| 127 | 209.69 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 156 | 210.15 | humidity | 50.0 | 30 | > th | dose independent | rect. | 23 | 23 |
| 172 | 211.65 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 23 | 23 |
| 179 | 212.46 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 184 | 213.22 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 185 | 213.22 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 192 | 213.56 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 20 | 7 |
| 198 | 213.61 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 201 | 213.62 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 21 | 5 |
| 206 | 213.64 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 245 | 213.93 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 258 | 213.97 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 20 | 18 |
| 285 | 214.07 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 21 | 17 |
| 304 | 214.12 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 10 | 18 |
| 320 | 214.15 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 332 | 214.17 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 10 | 14 |
| 359 | 214.21 | atmosphere | 1015.0 | 43200 | < th | dose independent | sin | 11 | NA |
| 393 | 214.25 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 415 | 214.27 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 432 | 214.30 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 495 | 214.36 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 1 | 23 |
| 497 | 214.37 | atmosphere | 1015.0 | 43200 | > th | dose independent | sin | 9 | NA |
| 513 | 214.38 | atmosphere | 1015.0 | 43200 | < th | dose independent | no | NA | NA |
| 588 | 214.44 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 1 | 14 |
| 655 | 214.50 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 10 | 19 |
| 711 | 214.56 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 838 | 214.67 | atmosphere | 1015.0 | 43200 | > th | dose independent | no | NA | NA |
| 850 | 214.67 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 1 | 23 |
| 878 | 214.71 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 6 | 1 |