Os01g0224100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DNA binding protein-like protein.
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Os01g0224100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to DNA binding protein-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 287.63 | 0.797 | 6.56 | 0.977 | 5.39 | 2.45 | -1.79 | -5.76 | -0.267 | 15.8 | 36.36 | 218 | 21.6 | 17.3 |
| 317.96 | 0.83 | 6.57 | 0.391 | 5.53 | 2.7 | -0.807 | -- | -0.228 | 15.3 | 28.29 | 100 | 22.6 | 16.3 |
| 292.86 | 0.797 | 6.6 | 0.769 | 5.3 | 2.58 | -- | -5.2 | -0.334 | 15.9 | 40.95 | 265 | 21.4 | 17.8 |
| 318 | 0.831 | 6.57 | 0.53 | 5.48 | 2.6 | -- | -- | -0.239 | 15.2 | 28.24 | 97 | 22.7 | 16.5 |
| 701.52 | 1.23 | 6.51 | -1.09 | -- | 3.77 | -- | -6.82 | -0.992 | -- | 72.37 | 740 | 0.567 | 16.2 |
| 395.23 | 0.932 | 6.66 | 0.0128 | 4.58 | -- | -1.25 | -- | -0.718 | 14.8 | -- | -- | -- | -- |
| 400.47 | 0.937 | 6.67 | -0.0166 | 4.58 | -- | -- | -- | -0.725 | 14.8 | -- | -- | -- | -- |
| 381.8 | 0.91 | 6.65 | 0.112 | -- | 5.13 | -- | -- | -0.663 | -- | 129.6 | 796 | 0.417 | 15.9 |
| 324.85 | 0.839 | 6.57 | -- | 5.49 | 2.49 | -- | -- | -0.292 | 15.2 | 28.24 | 96 | 22.7 | 16.4 |
| 1612.93 | 1.88 | 6.69 | -0.212 | -- | -- | -- | -- | -0.842 | -- | -- | -- | -- | -- |
| 400.48 | 0.936 | 6.67 | -- | 4.58 | -- | -- | -- | -0.723 | 14.8 | -- | -- | -- | -- |
| 380.08 | 0.908 | 6.65 | -- | -- | 5.23 | -- | -- | -0.658 | -- | 135.6 | 816 | 0.724 | 15 |
| 1614.11 | 1.88 | 6.68 | -- | -- | -- | -- | -- | -0.819 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 291.07 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 17 |
| 2 | 291.49 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 16 |
| 7 | 295.40 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 14 |
| 12 | 296.97 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 11 |
| 22 | 298.95 | temperature | 30 | 30 | < th | dose dependent | sin | 6 | NA |
| 50 | 302.71 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 15 |
| 79 | 304.31 | temperature | 30 | 720 | < th | dose dependent | sin | 11 | NA |
| 130 | 306.50 | temperature | 20 | 720 | < th | dose independent | rect. | 20 | 14 |
| 158 | 307.73 | temperature | 20 | 720 | < th | dose independent | sin | 10 | NA |
| 170 | 308.12 | temperature | 20 | 720 | < th | dose independent | rect. | 20 | 17 |
| 185 | 308.47 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 10 |
| 246 | 310.00 | temperature | 15 | 720 | > th | dose independent | rect. | 17 | 18 |
| 258 | 310.27 | temperature | 20 | 720 | < th | dose dependent | rect. | 22 | 5 |
| 284 | 311.05 | temperature | 15 | 720 | > th | dose independent | rect. | 16 | 14 |
| 300 | 311.42 | temperature | 20 | 720 | < th | dose dependent | rect. | 23 | 2 |
| 327 | 311.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 6 |
| 354 | 312.63 | temperature | 15 | 720 | > th | dose independent | rect. | 18 | 10 |
| 369 | 312.91 | wind | 9 | 14400 | < th | dose dependent | rect. | 20 | 9 |
| 382 | 313.22 | wind | 1 | 14400 | > th | dose dependent | rect. | 20 | 9 |
| 396 | 313.55 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 9 |
| 493 | 315.24 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 8 | 13 |
| 497 | 315.31 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 6 |
| 509 | 315.59 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 15 | 7 |
| 568 | 316.69 | humidity | 80 | 720 | < th | dose independent | rect. | 7 | 10 |
| 579 | 316.86 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 582 | 316.92 | radiation | 20 | 270 | < th | dose dependent | rect. | 16 | 16 |
| 593 | 317.07 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 22 | 17 |
| 598 | 317.13 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 602 | 317.16 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 21 |
| 639 | 317.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 20 |
| 641 | 317.64 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 21 |
| 667 | 318.01 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 701 | 318.31 | temperature | 15 | 270 | > th | dose independent | rect. | 15 | 7 |
| 723 | 318.60 | humidity | 80 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 768 | 319.03 | temperature | 15 | 720 | > th | dose independent | rect. | 4 | 23 |
| 790 | 319.25 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 794 | 319.32 | wind | 5 | 14400 | < th | dose dependent | rect. | 23 | 2 |
| 809 | 319.43 | temperature | 15 | 720 | > th | dose independent | sin | 12 | NA |
| 824 | 319.50 | temperature | 15 | 720 | > th | dose independent | rect. | 23 | 6 |
| 831 | 319.54 | wind | 9 | 14400 | < th | dose dependent | rect. | 23 | 2 |
| 872 | 319.81 | wind | 1 | 14400 | > th | dose dependent | sin | 10 | NA |
| 904 | 320.07 | wind | 9 | 14400 | < th | dose dependent | sin | 10 | NA |
| 944 | 320.34 | temperature | 15 | 720 | > th | dose independent | rect. | 23 | 15 |
| 985 | 320.60 | humidity | 80 | 720 | < th | dose independent | sin | 1 | NA |
| 997 | 320.68 | wind | 1 | 14400 | > th | dose dependent | rect. | 20 | 16 |