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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0399800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ethylene-responsive transcription factor 12 (Ethylene-responsive element binding factor 12) (EREBP-12) (AtERF12).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.18 (0.0153) R2 : 0.0252
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.11 (0.0321) R2dN8 : 0.0326 R2N8 : 0.0252
σ : 0.287
deviance : 37.87
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
35.13 0.278 3.17 0.0753 0.103 -0.221 0.203 -0.189 -0.0755 11.2 1000 4491 -- --
35.12 0.276 3.17 0.0645 0.101 -0.231 0.208 -- -0.075 11.2 999.8 5754 -- --
35.3 0.277 3.17 0.0809 0.102 -0.221 -- -0.189 -0.0755 11 1000 4491 -- --
35.3 0.277 3.17 0.0744 0.101 -0.226 -- -- -0.0726 11.1 1000 5820 -- --
35.93 0.279 3.17 0.0758 -- -0.227 -- -0.116 -0.0734 -- 1000 5722 -- --
36.72 0.284 3.17 0.108 0.103 -- 0.194 -- -0.0975 11.2 -- -- -- --
36.88 0.284 3.17 0.115 0.103 -- -- -- -0.0969 11.1 -- -- -- --
35.93 0.279 3.17 0.0718 -- -0.231 -- -- -0.0737 -- 999.9 5747 -- --
35.44 0.277 3.17 -- 0.101 -0.241 -- -- -0.0797 11 999.8 5796 -- --
37.53 0.286 3.18 0.113 -- -- -- -- -0.0977 -- -- -- -- --
37.23 0.285 3.18 -- 0.102 -- -- -- -0.11 11 -- -- -- --
36.07 0.28 3.17 -- -- -0.243 -- -- -0.0804 -- 999.9 5754 -- --
37.87 0.287 3.18 -- -- -- -- -- -0.11 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 33.48 wind 1.0 10 < th dose independent rect. 12 6
13 33.57 wind 1.0 10 < th dose dependent rect. 14 4
17 33.58 wind 1.0 10 < th dose dependent rect. 12 6
33 33.70 wind 1.0 10 < th dose dependent rect. 14 2
36 33.71 wind 1.0 90 < th dose dependent rect. 13 3
44 33.76 wind 1.0 90 < th dose independent rect. 13 1
126 33.97 humidity 90.0 4320 < th dose independent rect. 3 1
133 33.98 wind 1.0 10 < th dose dependent rect. 8 10
150 34.05 wind 1.0 10 < th dose independent rect. 8 10
197 34.22 radiation 1.0 14400 < th dose dependent rect. 23 1
258 34.39 humidity 90.0 4320 > th dose independent rect. 3 2
261 34.39 temperature 25.0 10 > th dose dependent rect. 22 2
273 34.43 humidity 90.0 4320 < th dose independent rect. 3 6
280 34.43 wind 3.0 4320 > th dose dependent rect. 20 1
296 34.48 temperature 25.0 30 > th dose independent rect. 22 2
303 34.50 humidity 90.0 720 < th dose independent rect. 3 2
326 34.55 wind 5.0 14400 < th dose independent rect. 11 4
344 34.59 wind 1.0 10 < th dose independent sin 21 NA
356 34.61 wind 5.0 14400 > th dose independent rect. 11 4
364 34.63 humidity 90.0 4320 > th dose independent rect. 2 7
371 34.66 wind 5.0 14400 < th dose independent rect. 11 1
376 34.67 wind 5.0 14400 > th dose independent rect. 10 6
379 34.68 wind 1.0 10 > th dose independent sin 21 NA
390 34.69 wind 5.0 4320 > th dose dependent rect. 20 7
426 34.74 wind 1.0 14400 < th dose independent rect. 6 1
427 34.74 wind 5.0 4320 < th dose independent rect. 20 1
447 34.77 temperature 20.0 270 > th dose independent rect. 23 10
456 34.79 wind 5.0 4320 > th dose independent rect. 20 1
480 34.81 temperature 20.0 4320 > th dose independent rect. 21 2
502 34.84 precipitation 0.1 1440 < th dose independent rect. 23 1
506 34.84 precipitation 0.1 1440 < th dose dependent rect. 23 1
516 34.85 temperature 25.0 270 > th dose dependent rect. 19 8
528 34.87 atmosphere 1005.0 14400 > th dose independent rect. 23 1
531 34.87 wind 1.0 10 < th dose dependent sin 22 NA
543 34.89 wind 5.0 14400 > th dose independent rect. 11 1
550 34.89 temperature 25.0 270 > th dose dependent rect. 19 5
551 34.90 atmosphere 1005.0 4320 < th dose independent rect. 21 1
575 34.92 wind 9.0 4320 < th dose dependent rect. 20 1
582 34.93 atmosphere 1005.0 4320 > th dose independent rect. 21 1
584 34.93 temperature 20.0 4320 < th dose independent rect. 21 2
592 34.93 wind 5.0 14400 > th dose independent rect. 24 17
610 34.95 wind 5.0 4320 > th dose independent sin 13 NA
612 34.95 atmosphere 1005.0 14400 < th dose independent rect. 23 2
620 34.95 temperature 15.0 270 > th dose dependent rect. 23 10
635 34.96 wind 5.0 14400 < th dose independent rect. 24 17
637 34.96 wind 1.0 14400 < th dose dependent rect. 6 1
638 34.96 temperature 20.0 720 > th dose dependent rect. 23 2
656 34.98 wind 5.0 14400 > th dose independent rect. 2 15
670 34.99 wind 5.0 14400 < th dose independent rect. 2 15
693 35.01 wind 5.0 4320 < th dose independent sin 13 NA
702 35.01 temperature 25.0 90 > th dose independent rect. 20 8
716 35.01 temperature 20.0 720 > th dose dependent rect. 23 8
726 35.02 atmosphere 1000.0 4320 > th dose independent rect. 12 6
727 35.02 atmosphere 1000.0 4320 < th dose independent rect. 12 6
757 35.03 atmosphere 1000.0 4320 > th dose independent rect. 16 1
758 35.03 atmosphere 1000.0 4320 < th dose independent rect. 16 1
766 35.03 atmosphere 1000.0 4320 > th dose independent rect. 13 4
768 35.03 atmosphere 1000.0 4320 < th dose independent rect. 13 4
769 35.03 atmosphere 1000.0 4320 < th dose independent rect. 15 4
837 35.04 wind 7.0 4320 > th dose independent rect. 20 8
861 35.04 wind 5.0 4320 > th dose independent rect. 14 15
869 35.05 atmosphere 1000.0 4320 > th dose independent sin 18 NA
879 35.05 wind 5.0 4320 > th dose independent rect. 20 6
910 35.05 atmosphere 1000.0 30 > th dose independent rect. 23 23
914 35.06 wind 5.0 14400 > th dose independent sin 0 NA
915 35.06 wind 5.0 14400 < th dose independent sin 0 NA
919 35.06 atmosphere 1000.0 4320 < th dose independent sin 17 NA
922 35.06 wind 1.0 14400 > th dose independent rect. 6 1
923 35.06 atmosphere 1000.0 4320 > th dose independent rect. 13 1
969 35.06 wind 5.0 4320 > th dose independent rect. 14 17
970 35.06 radiation 40.0 14400 > th dose independent rect. 15 17
971 35.06 humidity 90.0 10 < th dose independent rect. 20 18
983 35.07 radiation 40.0 14400 > th dose independent rect. 15 1