BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0399800 Os04g0399800|Os04g0399800
(292 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0399800 Similar to Ethylene-responsive transcription f... 284 5e-77
Os02g0520000 119 3e-27
Os07g0669500 Similar to Branched silkless1 78 8e-15
Os08g0173700 Similar to Ethylene-responsive transcription f... 74 1e-13
Os02g0594300 Similar to Enhancer of shoot regeneration ESR1 68 6e-12
Os05g0497300 Similar to Ethylene response factor 2 65 5e-11
>Os04g0399800 Similar to Ethylene-responsive transcription factor 12
(Ethylene-responsive element binding factor 12)
(EREBP-12) (AtERF12)
Length = 292
Score = 284 bits (727), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 163/292 (55%), Positives = 163/292 (55%)
Query: 1 MMNFSSYFYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNQTRYLGVRRRPW 60
MMNFSSYFY NNQTRYLGVRRRPW
Sbjct: 1 MMNFSSYFYSSSAAAAGGGGGGGEKKSSSSSASKKKQQQAAAAEGGNNQTRYLGVRRRPW 60
Query: 61 GRYAAEIRDPATKERHWLGTFDTXXXXXXXXXXXXXXXXXXXXXTNFAYPDLPPGSSVTP 120
GRYAAEIRDPATKERHWLGTFDT TNFAYPDLPPGSSVTP
Sbjct: 61 GRYAAEIRDPATKERHWLGTFDTAEEAAVAYDRAARSLRGARARTNFAYPDLPPGSSVTP 120
Query: 121 YLSPDLSADASDQLLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDMSSLMD 180
YLSPDLSADASDQLLQ VDMSSLMD
Sbjct: 121 YLSPDLSADASDQLLQPFYANPSAAAALPTPAAVMAGGGGVEFGGEYMYGGGVDMSSLMD 180
Query: 181 DIAAMPDDLPPSVTGGGGGFASSDEXXXXXXXXXXXXXXXCGGNGGGSSWCDXXXXXXXX 240
DIAAMPDDLPPSVTGGGGGFASSDE CGGNGGGSSWCD
Sbjct: 181 DIAAMPDDLPPSVTGGGGGFASSDEYSSGGGGMVDDVSMYCGGNGGGSSWCDASDFASYS 240
Query: 241 XXXXXXXXXXXXHGMYFEEGYVHSPLFSPMPAVDDAGADGFQLGGSSSSYYY 292
HGMYFEEGYVHSPLFSPMPAVDDAGADGFQLGGSSSSYYY
Sbjct: 241 SSSPAAAAAAGSHGMYFEEGYVHSPLFSPMPAVDDAGADGFQLGGSSSSYYY 292
>Os02g0520000
Length = 239
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/82 (68%), Positives = 59/82 (71%)
Query: 48 NQTRYLGVRRRPWGRYAAEIRDPATKERHWLGTFDTXXXXXXXXXXXXXXXXXXXXXTNF 107
N+ RYLGVRRRPWGRYAAEIRDPATKERHWLGTFDT TNF
Sbjct: 36 NEARYLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAEEAAVAYDRAARTIRGAAARTNF 95
Query: 108 AYPDLPPGSSVTPYLSPDLSAD 129
AYPDLPPGSS+TPYLSPDLS +
Sbjct: 96 AYPDLPPGSSLTPYLSPDLSTN 117
>Os07g0669500 Similar to Branched silkless1
Length = 318
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 51 RYLGVRRRPWGRYAAEIRDPATKERHWLGTFDTXXXXXXXXXXXXXXXXXXXXXTNFAYP 110
R+LGVRRRPWGRYAAEIRDP TKERHWLGTFDT TNF Y
Sbjct: 57 RFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGAQARTNFVYT 116
Query: 111 DLPPGSSVTPYLSP 124
+ P+L+P
Sbjct: 117 HA--AYNYPPFLAP 128
>Os08g0173700 Similar to Ethylene-responsive transcription factor 4
(Ethylene-responsive element binding factor 4) (Related
to APETALA-2 protein 5) (EREBP-4) (AtERF4)
Length = 175
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 50 TRYLGVRRRPWGRYAAEIRDPATKERHWLGTFDTXXXXXXXX-XXXXXXXXXXXXXTNFA 108
+ YLGVRRRPWGRYAAEIR+P TKERHWLGTFDT TNF
Sbjct: 35 SEYLGVRRRPWGRYAAEIRNPYTKERHWLGTFDTAEEAAVAYDLSAISISGAAAARTNFL 94
Query: 109 YPDL 112
YPD+
Sbjct: 95 YPDM 98
>Os02g0594300 Similar to Enhancer of shoot regeneration ESR1
Length = 345
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 34/57 (59%)
Query: 51 RYLGVRRRPWGRYAAEIRDPATKERHWLGTFDTXXXXXXXXXXXXXXXXXXXXXTNF 107
RY GVRRRPWGR+AAEIRDPA+KER WLGTFDT TNF
Sbjct: 58 RYRGVRRRPWGRFAAEIRDPASKERRWLGTFDTAEQAACAYDVAARAMRGTRARTNF 114
>Os05g0497300 Similar to Ethylene response factor 2
Length = 236
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 34/60 (56%)
Query: 52 YLGVRRRPWGRYAAEIRDPATKERHWLGTFDTXXXXXXXXXXXXXXXXXXXXXTNFAYPD 111
+ GVR+RPWGRYAAEIRDPA K R WLGTFDT TNF YP+
Sbjct: 38 FRGVRKRPWGRYAAEIRDPAKKSRVWLGTFDTAEEAARAYDAAAREYRGAKAKTNFPYPN 97
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.136 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,500,531
Number of extensions: 258543
Number of successful extensions: 1054
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1066
Number of HSP's successfully gapped: 7
Length of query: 292
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 192
Effective length of database: 11,814,401
Effective search space: 2268364992
Effective search space used: 2268364992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)