Os07g0669500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Branched silkless1.
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Os07g0669500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Branched silkless1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.5 | 0.374 | 3.35 | 0.188 | 0.259 | 0.186 | -0.49 | 1.39 | -0.0842 | 6.54 | 91 | 5868 | -- | -- |
| 66.08 | 0.379 | 3.35 | 0.106 | 0.287 | 0.268 | -0.483 | -- | -0.116 | 6.25 | 92 | 4683 | -- | -- |
| 64.08 | 0.373 | 3.35 | 0.184 | 0.259 | 0.183 | -- | 1.41 | -0.0822 | 6.55 | 91 | 5936 | -- | -- |
| 66.71 | 0.38 | 3.35 | 0.0987 | 0.288 | 0.26 | -- | -- | -0.12 | 6.5 | 92 | 4788 | -- | -- |
| 67.55 | 0.383 | 3.36 | 0.189 | -- | 0.185 | -- | 1.4 | -0.0767 | -- | 91 | 5841 | -- | -- |
| 66.92 | 0.384 | 3.34 | 0.0787 | 0.26 | -- | -0.504 | -- | -0.0677 | 6.45 | -- | -- | -- | -- |
| 67.55 | 0.385 | 3.34 | 0.0721 | 0.258 | -- | -- | -- | -0.0661 | 6.53 | -- | -- | -- | -- |
| 70.27 | 0.39 | 3.35 | 0.0937 | -- | 0.231 | -- | -- | -0.112 | -- | 92 | 5670 | -- | -- |
| 66.9 | 0.381 | 3.35 | -- | 0.293 | 0.253 | -- | -- | -0.125 | 6.42 | 91.68 | 4780 | -- | -- |
| 71.02 | 0.394 | 3.34 | 0.0785 | -- | -- | -- | -- | -0.0607 | -- | -- | -- | -- | -- |
| 67.69 | 0.385 | 3.34 | -- | 0.259 | -- | -- | -- | -0.0741 | 6.51 | -- | -- | -- | -- |
| 70.5 | 0.391 | 3.35 | -- | -- | 0.22 | -- | -- | -0.118 | -- | 91 | 5668 | -- | -- |
| 71.18 | 0.394 | 3.34 | -- | -- | -- | -- | -- | -0.0694 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.76 | radiation | 10.0 | 30 | > th | dose independent | rect. | 7 | 1 |
| 2 | 56.77 | humidity | 80.0 | 10 | < th | dose independent | rect. | 6 | 2 |
| 6 | 57.32 | humidity | 80.0 | 10 | < th | dose independent | rect. | 23 | 9 |
| 26 | 58.30 | radiation | 10.0 | 10 | > th | dose independent | rect. | 16 | 16 |
| 36 | 59.59 | temperature | 25.0 | 30 | > th | dose independent | rect. | 7 | 1 |
| 56 | 61.20 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 8 | 23 |
| 58 | 61.26 | wind | 5.0 | 30 | < th | dose independent | rect. | 7 | 1 |
| 62 | 61.35 | wind | 7.0 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 67 | 61.51 | wind | 1.0 | 30 | > th | dose independent | rect. | 7 | 1 |
| 71 | 61.73 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 75 | 61.80 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 76 | 61.84 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 77 | 61.84 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 85 | 61.91 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 7 | 1 |
| 88 | 61.91 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 91 | 61.93 | temperature | 10.0 | 30 | > th | dose independent | rect. | 7 | 1 |
| 93 | 61.93 | temperature | 30.0 | 30 | < th | dose independent | rect. | 7 | 1 |
| 94 | 61.93 | humidity | 50.0 | 30 | > th | dose independent | rect. | 7 | 1 |
| 96 | 61.93 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 7 | 1 |
| 97 | 61.93 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 7 | 1 |
| 98 | 61.93 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 7 | 1 |
| 99 | 61.93 | temperature | 10.0 | 30 | > th | dose independent | rect. | 8 | 23 |
| 100 | 61.93 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 2 | 2 |
| 103 | 61.94 | wind | 9.0 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 108 | 61.94 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 116 | 61.94 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 119 | 61.94 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 123 | 61.94 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 126 | 61.94 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 132 | 61.97 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 135 | 62.00 | radiation | 40.0 | 30 | < th | dose independent | rect. | 7 | 1 |
| 136 | 62.03 | wind | 9.0 | 30 | < th | dose independent | rect. | 8 | 23 |
| 140 | 62.04 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 7 | 1 |
| 145 | 62.07 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 1 | 7 |
| 147 | 62.09 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 149 | 62.10 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 8 | 23 |
| 151 | 62.10 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 8 | 23 |
| 157 | 62.25 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 158 | 62.25 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 160 | 62.28 | radiation | 20.0 | 10 | < th | dose independent | rect. | 7 | 1 |
| 161 | 62.28 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 3 | 6 |
| 173 | 62.39 | humidity | 50.0 | 30 | > th | dose independent | rect. | 8 | 23 |
| 177 | 62.47 | temperature | 25.0 | 90 | > th | dose independent | rect. | 1 | 1 |
| 179 | 62.47 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 1 | 2 |
| 190 | 62.57 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 7 | 1 |
| 191 | 62.57 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 215 | 62.68 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 216 | 62.68 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 219 | 62.68 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 223 | 62.68 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 232 | 62.68 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 233 | 62.68 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 253 | 62.68 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 263 | 62.72 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 271 | 62.78 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 272 | 62.78 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 276 | 62.79 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 283 | 62.81 | radiation | 10.0 | 10 | > th | dose independent | sin | 11 | NA |
| 287 | 62.82 | humidity | 90.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 290 | 62.83 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 292 | 62.83 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 293 | 62.83 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 297 | 62.83 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 299 | 62.83 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 304 | 62.83 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 306 | 62.83 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 307 | 62.83 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 311 | 62.83 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 316 | 62.83 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 319 | 62.84 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 7 | 1 |
| 325 | 62.88 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 327 | 62.90 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 4 | 5 |
| 328 | 62.91 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 336 | 62.92 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 341 | 62.93 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 343 | 62.95 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 345 | 62.96 | wind | 1.0 | 10 | > th | dose independent | rect. | 8 | 23 |
| 355 | 63.00 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 357 | 63.00 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 431 | 63.18 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 448 | 63.24 | humidity | 80.0 | 10 | < th | dose independent | rect. | 20 | 12 |
| 496 | 63.32 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 506 | 63.36 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 515 | 63.41 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 7 | 1 |
| 528 | 63.47 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 11 | 2 |
| 532 | 63.48 | radiation | 10.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 534 | 63.50 | humidity | 50.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 536 | 63.52 | radiation | 1.0 | 90 | > th | dose independent | rect. | 8 | 22 |
| 538 | 63.52 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 11 | 2 |
| 551 | 63.55 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 553 | 63.57 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 557 | 63.59 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 7 | 1 |
| 566 | 63.62 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 568 | 63.63 | humidity | 90.0 | 90 | < th | dose independent | rect. | 2 | 1 |
| 574 | 63.64 | humidity | 90.0 | 90 | < th | dose independent | rect. | 2 | 3 |
| 575 | 63.64 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 3 | 12 |
| 583 | 63.65 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 23 | 16 |
| 585 | 63.66 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 8 | 11 |
| 597 | 63.66 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 23 | 16 |
| 599 | 63.67 | temperature | 30.0 | 30 | < th | dose independent | rect. | 8 | 23 |
| 609 | 63.67 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 3 | 12 |
| 613 | 63.68 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 7 | 7 |
| 614 | 63.68 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 7 | 7 |
| 627 | 63.69 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 639 | 63.69 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 16 | 16 |
| 665 | 63.71 | humidity | 50.0 | 4320 | > th | dose dependent | sin | 4 | NA |
| 680 | 63.72 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 8 | 5 |
| 731 | 63.74 | humidity | 90.0 | 4320 | < th | dose dependent | sin | 4 | NA |
| 839 | 63.79 | humidity | 70.0 | 4320 | > th | dose independent | sin | 5 | NA |
| 857 | 63.79 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 10 | 2 |
| 918 | 63.81 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 8 | 18 |
| 920 | 63.81 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 936 | 63.82 | wind | 7.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 943 | 63.82 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 7 | 11 |
| 1000 | 63.84 | wind | 5.0 | 14400 | < th | dose independent | rect. | 11 | 1 |