FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0594300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Enhancer of shoot regeneration ESR1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.09 (0.0392) R2 : 0.167
β1 : 0.151 (0.144) R2dD : 0.00212 R2D : -0.013
β2 : -- (--) R2dC : -- R2C : --
β3 : 18.9 (2.16) R2dE : 1.24 R2E : -1.16
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 92.8 (10.3) R2dD*E : 1.31 R2D*E : -1.11
γ1 : -0.247 (0.0833) R2dN8 : 0.0215 R2N8 : 0.0161
σ : 0.729
deviance : 245.26
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 3.004
memory length : 30
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.01
open length of G : 0.988

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
244.31 0.728 3.09 0.134 0.077 18.8 -0.373 92.4 -0.25 1.11 3 30 5 1
285.8 0.793 3.06 -0.0198 0.0846 1.28 -0.354 -- -0.27 22.7 2.315 4 6.02 1.55
244.75 0.729 3.1 0.142 0.09 18.8 -- 92.2 -0.251 22.9 3 30 5.01 1
266.81 0.761 3.06 -0.0152 0.0684 2.44 -- -- -0.197 21.4 2.219 9 5.75 0.166
245.26 0.729 3.09 0.151 -- 18.9 -- 92.8 -0.247 -- 3.004 30 5.01 0.988
288.31 0.796 3.06 -0.026 0.0896 -- -0.291 -- -0.261 0.347 -- -- -- --
288.61 0.796 3.06 -0.0157 0.0977 -- -- -- -0.26 1.76 -- -- -- --
266.29 0.76 3.05 -0.00217 -- 2.99 -- -- -0.231 -- 2.555 9 5.72 0.175
265.79 0.759 3.06 -- 0.0924 2.91 -- -- -0.227 21.4 2.458 9 5.73 0.15
289.19 0.795 3.06 -0.0117 -- -- -- -- -0.258 -- -- -- -- --
288.61 0.795 3.06 -- 0.0974 -- -- -- -0.259 1.75 -- -- -- --
248.57 0.734 2.96 -- -- 5.03 -- -- -0.148 -- 3.03 7 5.7 0.217
289.19 0.794 3.06 -- -- -- -- -- -0.257 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 244.31 wind 3 30 > th dose dependent rect. 5 1
4 244.52 wind 3 30 > th dose independent rect. 5 1
5 244.52 humidity 90 30 < th dose dependent rect. 5 1
28 246.90 humidity 90 90 < th dose independent rect. 4 1
49 256.46 temperature 20 90 < th dose dependent rect. 4 1
54 257.22 temperature 20 10 < th dose dependent rect. 6 1
62 259.25 temperature 20 10 < th dose dependent rect. 4 3
87 260.17 wind 1 30 < th dose independent rect. 17 1
98 260.17 wind 1 30 < th dose dependent rect. 17 1
120 260.46 temperature 20 10 < th dose dependent rect. 4 9
163 261.71 temperature 20 90 < th dose dependent rect. 4 8
184 262.52 temperature 20 270 < th dose dependent rect. 2 3
197 263.49 humidity 70 90 < th dose independent rect. 17 1
199 263.54 humidity 70 90 < th dose dependent rect. 17 3
230 263.92 temperature 20 270 < th dose dependent rect. 2 1
329 266.37 temperature 20 90 < th dose dependent sin 1 NA
414 269.29 temperature 20 270 < th dose independent rect. 2 3
441 270.27 temperature 30 270 < th dose dependent rect. 24 6
471 270.74 temperature 20 270 < th dose independent rect. 2 1
530 271.49 temperature 20 10 < th dose independent rect. 4 2
552 271.80 humidity 50 270 > th dose independent rect. 6 9
581 272.24 humidity 70 1440 > th dose independent rect. 6 1
583 272.28 radiation 30 1440 < th dose independent rect. 6 1
590 272.41 wind 5 90 < th dose independent rect. 16 14
676 273.48 wind 1 30 > th dose independent rect. 2 7
687 273.63 humidity 90 30 < th dose dependent rect. 15 18
704 273.74 atmosphere 995 4320 > th dose independent rect. 6 1
722 273.89 humidity 90 270 < th dose independent rect. 2 17
736 274.04 humidity 60 14400 > th dose independent rect. 6 1
754 274.13 humidity 50 270 > th dose independent rect. 18 22
761 274.16 wind 1 30 > th dose independent rect. 3 18
777 274.29 wind 7 1440 < th dose independent rect. 6 1
779 274.29 temperature 10 1440 > th dose independent rect. 6 1
782 274.29 temperature 30 1440 < th dose independent rect. 6 1
786 274.29 humidity 50 1440 > th dose independent rect. 6 1
792 274.29 atmosphere 1015 1440 < th dose independent rect. 6 1
797 274.29 temperature 10 1440 > th dose independent rect. 7 23
819 274.45 wind 5 270 < th dose independent rect. 24 19
830 274.54 temperature 25 270 > th dose independent rect. 13 7
833 274.56 wind 1 90 > th dose independent rect. 4 15
853 274.71 temperature 25 90 < th dose independent rect. 8 17
861 274.78 humidity 80 90 < th dose independent rect. 14 18
895 274.95 radiation 1 90 > th dose independent rect. 17 13
899 274.98 humidity 80 1440 > th dose independent rect. 4 1
913 275.05 humidity 80 1440 > th dose independent rect. 2 4
916 275.09 humidity 80 10 < th dose independent rect. 15 18
918 275.09 temperature 30 270 < th dose dependent rect. 9 15
932 275.18 wind 1 270 > th dose independent rect. 8 16
934 275.19 humidity 50 270 > th dose independent rect. 8 16
956 275.30 humidity 50 270 < th dose independent rect. 14 21
974 275.35 wind 9 270 < th dose dependent rect. 13 6
975 275.36 humidity 50 270 < th dose dependent sin 11 NA
978 275.36 temperature 30 30 < th dose dependent rect. 9 18
981 275.37 wind 9 270 < th dose dependent rect. 24 19