BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0594300 Os02g0594300|Os02g0594300
         (345 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0594300  Similar to Enhancer of shoot regeneration ESR1      312   2e-85

>Os02g0594300 Similar to Enhancer of shoot regeneration ESR1
          Length = 345

 Score =  312 bits (799), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 184/345 (53%), Positives = 184/345 (53%)

Query: 1   MQAQQAMDEPANAQLYGXXXXXXXXXRSKRPSPXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MQAQQAMDEPANAQLYG         RSKRPSP                           
Sbjct: 1   MQAQQAMDEPANAQLYGHAHAHSHHHRSKRPSPGGGGGGAATLGADGGGGGGSLSGTRYR 60

Query: 61  XXXXXXXXXFAAEIRDPASKERRWLGTFDTAEQAACAYDVXXXXXXXXXXXXNXXXXXXX 120
                    FAAEIRDPASKERRWLGTFDTAEQAACAYDV            N       
Sbjct: 61  GVRRRPWGRFAAEIRDPASKERRWLGTFDTAEQAACAYDVAARAMRGTRARTNFPVPAAA 120

Query: 121 XXXXXXXXXCWPWVNIPPQGAAAAASHQQPXXXXXXXXXXMSSSPXXXXXXXXXXXXXXX 180
                    CWPWVNIPPQGAAAAASHQQP          MSSSP               
Sbjct: 121 GFPGGGGGGCWPWVNIPPQGAAAAASHQQPLNTLLLHNLLMSSSPHGCLLLHHAGHGHGH 180

Query: 181 XXXXXXXXXXXXNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDAWGFL 240
                       N                                       DDDAWGFL
Sbjct: 181 AHSHSHSHSRAHNPSTRPPTSAPPPPPPAAASSATTAPATTTGAAATSAPGADDDAWGFL 240

Query: 241 LRREPPEAGLLQDVLHGFYPTRRPHDDAGPAPKLERPYEATSSYRVSSPWGAVEXXXXXX 300
           LRREPPEAGLLQDVLHGFYPTRRPHDDAGPAPKLERPYEATSSYRVSSPWGAVE      
Sbjct: 241 LRREPPEAGLLQDVLHGFYPTRRPHDDAGPAPKLERPYEATSSYRVSSPWGAVEDCDDGD 300

Query: 301 XXXXXXYRGFPMMPQGLLEDVIQCPPYMEVLAAPSAAVGRVSRRG 345
                 YRGFPMMPQGLLEDVIQCPPYMEVLAAPSAAVGRVSRRG
Sbjct: 301 GDGDDDYRGFPMMPQGLLEDVIQCPPYMEVLAAPSAAVGRVSRRG 345



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.132    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,481,705
Number of extensions: 220980
Number of successful extensions: 616
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 616
Number of HSP's successfully gapped: 2
Length of query: 345
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 243
Effective length of database: 11,709,973
Effective search space: 2845523439
Effective search space used: 2845523439
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)