BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0594300 Os02g0594300|Os02g0594300
(345 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G12980.1 | chr1:4429791-4430777 FORWARD LENGTH=329 64 1e-10
AT1G24590.1 | chr1:8714389-8715309 REVERSE LENGTH=307 62 4e-10
AT5G13910.1 | chr5:4482450-4483085 REVERSE LENGTH=212 56 4e-08
AT1G12890.1 | chr1:4391734-4392393 FORWARD LENGTH=220 56 4e-08
AT5G18560.1 | chr5:6164859-6165905 REVERSE LENGTH=349 55 5e-08
AT1G28160.1 | chr1:9839387-9840124 FORWARD LENGTH=246 53 2e-07
AT3G61630.1 | chr3:22805274-22806221 FORWARD LENGTH=316 51 9e-07
AT3G15210.1 | chr3:5121472-5122140 FORWARD LENGTH=223 51 9e-07
AT5G44210.1 | chr5:17806742-17807344 FORWARD LENGTH=201 51 1e-06
AT2G46310.1 | chr2:19011614-19012498 FORWARD LENGTH=295 49 3e-06
AT1G28360.1 | chr1:9951934-9952503 FORWARD LENGTH=190 49 5e-06
AT1G68550.1 | chr1:25725810-25726784 REVERSE LENGTH=325 49 5e-06
AT4G11140.1 | chr4:6794930-6795793 REVERSE LENGTH=288 48 6e-06
AT1G50640.1 | chr1:18757602-18758279 REVERSE LENGTH=226 48 7e-06
>AT1G12980.1 | chr1:4429791-4430777 FORWARD LENGTH=329
Length = 328
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/30 (93%), Positives = 29/30 (96%)
Query: 70 FAAEIRDPASKERRWLGTFDTAEQAACAYD 99
+AAEIRDP SKERRWLGTFDTAEQAACAYD
Sbjct: 68 YAAEIRDPMSKERRWLGTFDTAEQAACAYD 97
>AT1G24590.1 | chr1:8714389-8715309 REVERSE LENGTH=307
Length = 306
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/30 (90%), Positives = 29/30 (96%)
Query: 70 FAAEIRDPASKERRWLGTFDTAEQAACAYD 99
+AAEIRDP SKERRWLGTFDTAE+AACAYD
Sbjct: 69 YAAEIRDPLSKERRWLGTFDTAEEAACAYD 98
>AT5G13910.1 | chr5:4482450-4483085 REVERSE LENGTH=212
Length = 211
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/30 (80%), Positives = 27/30 (90%)
Query: 70 FAAEIRDPASKERRWLGTFDTAEQAACAYD 99
+AAEIRDP +KER WLGTFDTAE+AA AYD
Sbjct: 31 YAAEIRDPTTKERHWLGTFDTAEEAALAYD 60
>AT1G12890.1 | chr1:4391734-4392393 FORWARD LENGTH=220
Length = 219
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 28/31 (90%)
Query: 70 FAAEIRDPASKERRWLGTFDTAEQAACAYDV 100
+AAEIR+P +KER WLGTFDTAE+AA AYDV
Sbjct: 32 YAAEIRNPFTKERHWLGTFDTAEEAAFAYDV 62
>AT5G18560.1 | chr5:6164859-6165905 REVERSE LENGTH=349
Length = 348
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/30 (76%), Positives = 26/30 (86%)
Query: 70 FAAEIRDPASKERRWLGTFDTAEQAACAYD 99
+AAEIRDP +KER WLGTFDTA +AA AYD
Sbjct: 66 YAAEIRDPTTKERHWLGTFDTAHEAALAYD 95
>AT1G28160.1 | chr1:9839387-9840124 FORWARD LENGTH=246
Length = 245
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/30 (76%), Positives = 27/30 (90%)
Query: 70 FAAEIRDPASKERRWLGTFDTAEQAACAYD 99
+AAEIR+P +KER WLGTFDTAE+AA AYD
Sbjct: 50 YAAEIRNPTTKERYWLGTFDTAEEAALAYD 79
>AT3G61630.1 | chr3:22805274-22806221 FORWARD LENGTH=316
Length = 315
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/30 (76%), Positives = 26/30 (86%)
Query: 70 FAAEIRDPASKERRWLGTFDTAEQAACAYD 99
FAAEIRDP+S+ R WLGTF TAE+AA AYD
Sbjct: 116 FAAEIRDPSSRTRIWLGTFVTAEEAAIAYD 145
>AT3G15210.1 | chr3:5121472-5122140 FORWARD LENGTH=223
Length = 222
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 25/31 (80%)
Query: 70 FAAEIRDPASKERRWLGTFDTAEQAACAYDV 100
+AAEIRDP K R WLGTFDTAE+AA AYD
Sbjct: 36 YAAEIRDPGKKTRVWLGTFDTAEEAARAYDT 66
>AT5G44210.1 | chr5:17806742-17807344 FORWARD LENGTH=201
Length = 200
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 25/31 (80%)
Query: 70 FAAEIRDPASKERRWLGTFDTAEQAACAYDV 100
+AAEIRDP K R WLGTFDTAE+AA AYD
Sbjct: 44 YAAEIRDPGKKTRVWLGTFDTAEEAARAYDT 74
>AT2G46310.1 | chr2:19011614-19012498 FORWARD LENGTH=295
Length = 294
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/30 (73%), Positives = 25/30 (83%)
Query: 70 FAAEIRDPASKERRWLGTFDTAEQAACAYD 99
FAAEIRDP+S+ R WLGTF TAE+AA YD
Sbjct: 110 FAAEIRDPSSRTRLWLGTFATAEEAAIGYD 139
>AT1G28360.1 | chr1:9951934-9952503 FORWARD LENGTH=190
Length = 189
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/30 (73%), Positives = 24/30 (80%)
Query: 70 FAAEIRDPASKERRWLGTFDTAEQAACAYD 99
+AAEIRDP K R WLGTFDT E+AA AYD
Sbjct: 23 YAAEIRDPWKKTRVWLGTFDTPEEAALAYD 52
>AT1G68550.1 | chr1:25725810-25726784 REVERSE LENGTH=325
Length = 324
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/29 (75%), Positives = 23/29 (79%)
Query: 71 AAEIRDPASKERRWLGTFDTAEQAACAYD 99
AAEIRDP K R WLGTFDT E+AA AYD
Sbjct: 125 AAEIRDPIKKTRTWLGTFDTLEEAAKAYD 153
>AT4G11140.1 | chr4:6794930-6795793 REVERSE LENGTH=288
Length = 287
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 24/29 (82%)
Query: 71 AAEIRDPASKERRWLGTFDTAEQAACAYD 99
AAEIRDP+ + R WLGTFDTAE+AA YD
Sbjct: 99 AAEIRDPSRRVRVWLGTFDTAEEAAIVYD 127
>AT1G50640.1 | chr1:18757602-18758279 REVERSE LENGTH=226
Length = 225
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/30 (76%), Positives = 25/30 (83%)
Query: 70 FAAEIRDPASKERRWLGTFDTAEQAACAYD 99
FAAEIRDP K R WLGTFD+AE+AA AYD
Sbjct: 39 FAAEIRDPWKKARVWLGTFDSAEEAARAYD 68
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.132 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,107,771
Number of extensions: 111398
Number of successful extensions: 310
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 324
Number of HSP's successfully gapped: 18
Length of query: 345
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 246
Effective length of database: 8,392,385
Effective search space: 2064526710
Effective search space used: 2064526710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)