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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0173700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ethylene-responsive transcription factor 4 (Ethylene-responsive element binding factor 4) (Related to APETALA-2 protein 5) (EREBP-4) (AtERF4).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.96 (0.108) R2 : 0.0936
β1 : 2.43 (0.573) R2dD : 0.345 R2D : -0.324
β2 : -- (--) R2dC : -- R2C : --
β3 : -8.66 (2.38) R2dE : 2.68 R2E : -3.42
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 55.6 (13.7) R2dD*E : 3.46 R2D*E : -2.64
γ1 : -0.244 (0.11) R2dN8 : 0.0126 R2N8 : -0.126
σ : 0.962
deviance : 426.9
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_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 998.2
memory length : 166
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
426.27 0.97 2.97 2.37 0.161 -8.25 0.609 53.3 -0.233 15.4 998.3 125 -- --
442.33 0.987 3.34 0.251 0.202 0.86 0.795 -- -0.236 15.5 998.3 125 -- --
425.2 0.96 2.96 2.39 0.17 -8.4 -- 54.1 -0.228 13.9 998.3 167 -- --
441.72 0.979 3.35 0.225 0.217 0.905 -- -- -0.253 14.4 998.6 148 -- --
426.9 0.962 2.96 2.43 -- -8.66 -- 55.6 -0.244 -- 998.2 166 -- --
455.36 1 3.35 0.342 0.216 -- 0.76 -- -0.271 15.1 -- -- -- --
456.96 1 3.34 0.358 0.224 -- -- -- -0.267 13.8 -- -- -- --
444.43 0.982 3.34 0.22 -- 0.948 -- -- -0.238 -- 998.5 148 -- --
442.93 0.98 3.34 -- 0.219 0.951 -- -- -0.251 13.9 998.8 200 -- --
460 1 3.35 0.348 -- -- -- -- -0.273 -- -- -- -- --
460.33 1 3.35 -- 0.217 -- -- -- -0.307 13.8 -- -- -- --
445.85 0.983 3.34 -- -- 0.953 -- -- -0.253 -- 998.8 199 -- --
463.2 1 3.35 -- -- -- -- -- -0.311 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 414.13 atmosphere 1000 270 < th dose dependent rect. 12 3
3 416.14 atmosphere 1000 270 < th dose dependent rect. 13 1
5 416.37 atmosphere 1000 270 < th dose independent rect. 12 3
7 416.58 atmosphere 1000 270 < th dose dependent rect. 8 8
15 417.73 atmosphere 1000 270 < th dose independent rect. 13 1
24 419.09 atmosphere 1000 10 < th dose dependent rect. 14 2
59 421.40 atmosphere 1000 90 < th dose independent rect. 12 10
60 421.45 atmosphere 1000 10 < th dose dependent rect. 16 1
96 423.03 atmosphere 1000 270 < th dose dependent sin 0 NA
104 423.31 atmosphere 1000 90 < th dose dependent rect. 12 10
161 425.49 atmosphere 1000 90 < th dose dependent rect. 1 3
191 426.02 atmosphere 1000 10 < th dose independent rect. 13 10
206 426.22 atmosphere 1000 90 < th dose independent rect. 1 3
272 427.63 wind 1 90 < th dose dependent rect. 21 2
326 428.78 atmosphere 1000 10 < th dose independent rect. 2 2
332 428.92 atmosphere 1000 720 < th dose dependent rect. 7 2
335 428.96 atmosphere 1000 720 < th dose dependent rect. 6 4
369 429.39 atmosphere 1000 270 < th dose independent rect. 24 16
417 430.12 atmosphere 1000 90 < th dose independent rect. 2 1
423 430.18 atmosphere 1000 90 < th dose dependent rect. 2 1
442 430.37 wind 5 90 > th dose independent rect. 4 3
443 430.37 wind 5 90 > th dose dependent rect. 5 2
469 430.67 radiation 20 90 > th dose independent rect. 6 1
484 430.67 radiation 20 90 > th dose dependent rect. 6 1
500 430.69 atmosphere 1000 270 > th dose independent sin 23 NA
526 430.86 atmosphere 1000 720 < th dose independent rect. 7 1
555 431.05 atmosphere 1000 270 < th dose independent sin 22 NA
650 431.95 atmosphere 1000 720 > th dose independent rect. 2 9
658 432.03 atmosphere 1000 720 < th dose independent rect. 4 9
679 432.25 atmosphere 1000 720 > th dose independent rect. 2 11
691 432.36 atmosphere 995 10 > th dose independent sin 6 NA
724 432.61 atmosphere 1000 720 > th dose independent rect. 5 8
738 432.69 wind 1 10 < th dose independent rect. 21 1
746 432.69 wind 1 10 < th dose dependent rect. 14 8
755 432.75 wind 1 90 < th dose dependent rect. 14 9
770 432.87 wind 1 90 < th dose independent rect. 21 1
833 433.26 atmosphere 1000 720 > th dose independent rect. 7 3
910 433.69 wind 7 30 > th dose independent rect. 13 1
959 434.00 wind 1 10 < th dose independent rect. 14 8
986 434.17 atmosphere 1000 720 > th dose independent rect. 23 15