BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0173700 Os08g0173700|J065205D04
(175 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0173700 Similar to Ethylene-responsive transcription f... 170 5e-43
Os04g0399800 Similar to Ethylene-responsive transcription f... 96 1e-20
Os02g0520000 95 2e-20
Os07g0669500 Similar to Branched silkless1 90 1e-18
Os02g0594300 Similar to Enhancer of shoot regeneration ESR1 79 2e-15
Os01g0224100 Similar to DNA binding protein-like protein 71 4e-13
Os01g0657400 Similar to Ethylene-responsive transcription f... 70 9e-13
Os05g0497200 Similar to Ethylene-responsive transcription f... 70 1e-12
Os04g0398000 Pathogenesis-related transcriptional factor an... 68 3e-12
Os02g0764700 Similar to Ethylene-responsive transcription f... 67 5e-12
Os09g0457900 Similar to AP2 domain containing protein RAP2.... 67 7e-12
Os04g0257500 Similar to Transcription factor TSRF1 67 9e-12
Os07g0617000 Similar to Ethylene response factor 2 66 1e-11
Os12g0168100 Similar to AP2 domain containing protein RAP2.... 66 1e-11
Os08g0474000 Similar to AP2 domain containing protein RAP2.... 66 2e-11
Os05g0361700 Similar to EREBP-2 protein (Fragment) 65 2e-11
Os02g0654700 Similar to Ethylene-responsive transcription f... 65 3e-11
Os09g0434500 Similar to Ethylene response factor 2 65 3e-11
Os09g0287000 Similar to Ethylene-responsive transcription f... 64 5e-11
Os03g0150200 Similar to Ethylene-responsive transcription f... 64 5e-11
>Os08g0173700 Similar to Ethylene-responsive transcription factor 4
(Ethylene-responsive element binding factor 4) (Related
to APETALA-2 protein 5) (EREBP-4) (AtERF4)
Length = 175
Score = 170 bits (430), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 101/175 (57%), Positives = 101/175 (57%)
Query: 1 MADAAEQHHXXXXXXXXXXXXXXXXXXXXXXXXSSEYLGVRRRPWGRYAAEIRNPYTKER 60
MADAAEQHH SSEYLGVRRRPWGRYAAEIRNPYTKER
Sbjct: 1 MADAAEQHHRQEETAAATTTPQQMMMRRRRARASSEYLGVRRRPWGRYAAEIRNPYTKER 60
Query: 61 HWLGTFDTAEEAAVAYDLXXXXXXXXXXXRTNFLYPDMHHHHPSXXXXXXXXXXXXXXXX 120
HWLGTFDTAEEAAVAYDL RTNFLYPDMHHHHPS
Sbjct: 61 HWLGTFDTAEEAAVAYDLSAISISGAAAARTNFLYPDMHHHHPSPPQHALSPAVPPPPPP 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXGDDESLTIATILQSFQYQQSVPPASSGSMFYY 175
GDDESLTIATILQSFQYQQSVPPASSGSMFYY
Sbjct: 121 PPPSPLYDDDYLSPAAAEEEVEAGDDESLTIATILQSFQYQQSVPPASSGSMFYY 175
>Os04g0399800 Similar to Ethylene-responsive transcription factor 12
(Ethylene-responsive element binding factor 12)
(EREBP-12) (AtERF12)
Length = 292
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 35 SEYLGVRRRPWGRYAAEIRNPYTKERHWLGTFDTAEEAAVAYDLXXXXXXXXXXXRTNFL 94
+ YLGVRRRPWGRYAAEIR+P TKERHWLGTFDTAEEAAVAYD RTNF
Sbjct: 50 TRYLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAEEAAVAYD-RAARSLRGARARTNFA 108
Query: 95 YPDM 98
YPD+
Sbjct: 109 YPDL 112
>Os02g0520000
Length = 239
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 35 SEYLGVRRRPWGRYAAEIRNPYTKERHWLGTFDTAEEAAVAYDLXXXXXXXXXXXRTNFL 94
+ YLGVRRRPWGRYAAEIR+P TKERHWLGTFDTAEEAAVAYD RTNF
Sbjct: 38 ARYLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAEEAAVAYD-RAARTIRGAAARTNFA 96
Query: 95 YPDM 98
YPD+
Sbjct: 97 YPDL 100
>Os07g0669500 Similar to Branched silkless1
Length = 318
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Query: 35 SEYLGVRRRPWGRYAAEIRNPYTKERHWLGTFDTAEEAAVAYDLXXXXXXXXXXXRTNFL 94
+LGVRRRPWGRYAAEIR+P TKERHWLGTFDTA+EAA+AYD RTNF+
Sbjct: 56 GRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYD-RAALSMKGAQARTNFV 114
Query: 95 YPDMHHHHP 103
Y +++P
Sbjct: 115 YTHAAYNYP 123
>Os02g0594300 Similar to Enhancer of shoot regeneration ESR1
Length = 345
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/57 (64%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
Query: 37 YLGVRRRPWGRYAAEIRNPYTKERHWLGTFDTAEEAAVAYDLXXXXXXXXXXXRTNF 93
Y GVRRRPWGR+AAEIR+P +KER WLGTFDTAE+AA AYD+ RTNF
Sbjct: 59 YRGVRRRPWGRFAAEIRDPASKERRWLGTFDTAEQAACAYDV-AARAMRGTRARTNF 114
>Os01g0224100 Similar to DNA binding protein-like protein
Length = 380
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 30/41 (73%), Positives = 35/41 (85%)
Query: 37 YLGVRRRPWGRYAAEIRNPYTKERHWLGTFDTAEEAAVAYD 77
+ GVRRRPWG+YAAEIR+P+ + R WLGTFDTAEEAA YD
Sbjct: 150 FRGVRRRPWGKYAAEIRDPWRRVRVWLGTFDTAEEAAKVYD 190
>Os01g0657400 Similar to Ethylene-responsive transcription factor 5
(Ethylene-responsive element binding factor 5) (EREBP-5)
(AtERF5)
Length = 292
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 37/44 (84%)
Query: 34 SSEYLGVRRRPWGRYAAEIRNPYTKERHWLGTFDTAEEAAVAYD 77
S+++ GVRRRPWG++AAEIR+P+ R WLGTFDTAEEAA YD
Sbjct: 93 STKFRGVRRRPWGKFAAEIRDPWRGVRVWLGTFDTAEEAARVYD 136
>Os05g0497200 Similar to Ethylene-responsive transcription factor 11
(Ethylene-responsive element binding factor 11)
(EREBP-11) (AtERF11)
Length = 189
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 35 SEYLGVRRRPWGRYAAEIRNPYTKERHWLGTFDTAEEAAVAYDLXXXXXXXXXXXRTNF 93
+ Y GVR+RPWGRYAAEIR+P+ K R WLGT+DT EAA+AYD RTNF
Sbjct: 21 AHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTYDTPVEAALAYD-RAAVALRGVKARTNF 78
>Os04g0398000 Pathogenesis-related transcriptional factor and ERF domain
containing protein
Length = 268
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/41 (70%), Positives = 35/41 (85%)
Query: 37 YLGVRRRPWGRYAAEIRNPYTKERHWLGTFDTAEEAAVAYD 77
Y GVR+RPWG++AAEIR+P R WLGTFDTAE+AA+AYD
Sbjct: 67 YRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAAIAYD 107
>Os02g0764700 Similar to Ethylene-responsive transcription factor 4
(Ethylene-responsive element binding factor 4) (Related
to APETALA-2 protein 5) (EREBP-4) (AtERF4)
Length = 242
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 35/45 (77%)
Query: 34 SSEYLGVRRRPWGRYAAEIRNPYTKERHWLGTFDTAEEAAVAYDL 78
S Y GVRRRPWG++AAEIR+P WLGTFDTAE+AA AYD+
Sbjct: 119 GSRYRGVRRRPWGKWAAEIRDPRRAVCKWLGTFDTAEDAARAYDV 163
>Os09g0457900 Similar to AP2 domain containing protein RAP2.6 (Fragment)
Length = 274
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/41 (73%), Positives = 33/41 (80%)
Query: 37 YLGVRRRPWGRYAAEIRNPYTKERHWLGTFDTAEEAAVAYD 77
Y GVR RPWG++AAEIR+P R WLGTFDTAEEAA AYD
Sbjct: 130 YRGVRHRPWGKWAAEIRDPRRAVRKWLGTFDTAEEAARAYD 170
>Os04g0257500 Similar to Transcription factor TSRF1
Length = 128
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 32/45 (71%), Positives = 37/45 (82%), Gaps = 1/45 (2%)
Query: 34 SSEYLGVRRRPWGRYAAEIRNP-YTKERHWLGTFDTAEEAAVAYD 77
+S+Y GVRRRPWG++AAEIR+P R WLGTFDTAEEAA AYD
Sbjct: 9 ASKYRGVRRRPWGKFAAEIRDPERGGSRVWLGTFDTAEEAARAYD 53
>Os07g0617000 Similar to Ethylene response factor 2
Length = 342
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 35 SEYLGVRRRPWGRYAAEIRNPYTKERHWLGTFDTAEEAAVAYDLXXXXXXXXXXXRTNFL 94
+ Y G+R+RPWG++AAEIR+P R WLGTF TAEEAA+AYD+ + NF
Sbjct: 110 TRYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFGTAEEAAMAYDV-EARRIRGKKAKVNF- 167
Query: 95 YPDMHHHHP 103
PD P
Sbjct: 168 -PDAAAAAP 175
>Os12g0168100 Similar to AP2 domain containing protein RAP2.6 (Fragment)
Length = 341
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/41 (70%), Positives = 35/41 (85%)
Query: 37 YLGVRRRPWGRYAAEIRNPYTKERHWLGTFDTAEEAAVAYD 77
Y GVR+RPWG++AAEIR+P+ R WLGTFDTAE+AA AYD
Sbjct: 156 YRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEDAARAYD 196
>Os08g0474000 Similar to AP2 domain containing protein RAP2.6 (Fragment)
Length = 219
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 39 GVRRRPWGRYAAEIRNPYTKERHWLGTFDTAEEAAVAYDLXXXXXXXXXXXRTNFLYPDM 98
GVR+RPWG++AAEIR+P R WLGTFDTAEEAA AYD + NF +P+
Sbjct: 78 GVRQRPWGKWAAEIRDPRRAVRKWLGTFDTAEEAARAYD-RAAVEFRGPRAKLNFPFPEQ 136
Query: 99 HHHH 102
H
Sbjct: 137 LSAH 140
>Os05g0361700 Similar to EREBP-2 protein (Fragment)
Length = 198
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 34/42 (80%)
Query: 37 YLGVRRRPWGRYAAEIRNPYTKERHWLGTFDTAEEAAVAYDL 78
Y G+RRRPWGR+AAEIR+P R WLGT+ TAEEAA AYD+
Sbjct: 54 YRGIRRRPWGRWAAEIRDPRKGARVWLGTYATAEEAARAYDV 95
>Os02g0654700 Similar to Ethylene-responsive transcription factor 5
(Ethylene-responsive element binding factor 5) (EREBP-5)
(AtERF5)
Length = 303
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 35/42 (83%), Gaps = 1/42 (2%)
Query: 37 YLGVRRRPWGRYAAEIRNPYTK-ERHWLGTFDTAEEAAVAYD 77
Y GVR+RPWG++AAEIR+P R WLGTFD+AEEAAVAYD
Sbjct: 149 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFDSAEEAAVAYD 190
>Os09g0434500 Similar to Ethylene response factor 2
Length = 396
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 36/43 (83%)
Query: 35 SEYLGVRRRPWGRYAAEIRNPYTKERHWLGTFDTAEEAAVAYD 77
++Y G+R+RPWG++AAEIR+P R WLGT++TAEEAA AYD
Sbjct: 134 NQYRGIRQRPWGKWAAEIRDPSKGVRVWLGTYNTAEEAARAYD 176
>Os09g0287000 Similar to Ethylene-responsive transcription factor 5
(Ethylene-responsive element binding factor 5) (EREBP-5)
(AtERF5)
Length = 250
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 32/39 (82%)
Query: 39 GVRRRPWGRYAAEIRNPYTKERHWLGTFDTAEEAAVAYD 77
GVR+RPWGR+A+EIR+P R WLGTFDTA EAA AYD
Sbjct: 104 GVRQRPWGRWASEIRDPVKGARVWLGTFDTAVEAARAYD 142
>Os03g0150200 Similar to Ethylene-responsive transcription factor 5
(Ethylene-responsive element binding factor 5 homolog)
(EREBP-4) (NtERF4)
Length = 141
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 37 YLGVRRRPWGRYAAEIRNP-YTKERHWLGTFDTAEEAAVAYDLXXXXXXXXXXXRTNFLY 95
Y GVR+RPWG++AAEIR+P R WLGTFDTAEEAA AYD +
Sbjct: 15 YRGVRKRPWGKFAAEIRDPERGGARVWLGTFDTAEEAARAYDRAAFAMKGATAM---LNF 71
Query: 96 PDMHHH 101
P HHH
Sbjct: 72 PGDHHH 77
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.131 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,445,455
Number of extensions: 75979
Number of successful extensions: 344
Number of sequences better than 1.0e-10: 38
Number of HSP's gapped: 356
Number of HSP's successfully gapped: 39
Length of query: 175
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 81
Effective length of database: 12,127,685
Effective search space: 982342485
Effective search space used: 982342485
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 152 (63.2 bits)