Os02g0654700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ethylene-responsive transcription factor 5 (Ethylene-responsive element binding factor 5) (EREBP-5) (AtERF5).
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Os02g0654700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ethylene-responsive transcription factor 5 (Ethylene-responsive element binding factor 5) (EREBP-5) (AtERF5).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 498.4 | 1.05 | 9 | 3.86 | 0.367 | -1.46 | -0.777 | 0.787 | 1.57 | 15.2 | 10.83 | 82 | -- | -- |
| 498.1 | 1.04 | 8.98 | 3.94 | 0.417 | -1.47 | -0.221 | -- | 1.59 | 14.9 | 10.25 | 67 | -- | -- |
| 496.65 | 1.04 | 9.02 | 3.85 | 0.323 | -1.43 | -- | 0.452 | 1.57 | 15.2 | 10.23 | 67 | -- | -- |
| 497.39 | 1.04 | 9.01 | 3.83 | 0.367 | -1.44 | -- | -- | 1.55 | 14.8 | 10.22 | 66 | -- | -- |
| 500.48 | 1.04 | 9 | 3.87 | -- | -1.25 | -- | 0.492 | 1.57 | -- | 10.25 | 64 | -- | -- |
| 558.36 | 1.11 | 9.06 | 3.69 | 1.14 | -- | 0.203 | -- | 1.44 | 24 | -- | -- | -- | -- |
| 558.54 | 1.11 | 9.06 | 3.68 | 1.14 | -- | -- | -- | 1.44 | 24 | -- | -- | -- | -- |
| 501.5 | 1.04 | 9.02 | 3.81 | -- | -1.23 | -- | -- | 1.53 | -- | 10.25 | 64 | -- | -- |
| 843.08 | 1.35 | 9.08 | -- | 0.387 | -1.47 | -- | -- | 1.16 | 14.3 | 8.84 | 67 | -- | -- |
| 640.04 | 1.18 | 9.03 | 3.71 | -- | -- | -- | -- | 1.46 | -- | -- | -- | -- | -- |
| 915.26 | 1.42 | 9.15 | -- | 1.19 | -- | -- | -- | 1.03 | 0.147 | -- | -- | -- | -- |
| 848.55 | 1.36 | 9.11 | -- | -- | -1.28 | -- | -- | 1.09 | -- | 8.84 | 67 | -- | -- |
| 1003.9 | 1.48 | 9.12 | -- | -- | -- | -- | -- | 1.04 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 491.30 | radiation | 20 | 90 | < th | dose dependent | rect. | 11 | 21 |
| 2 | 491.42 | humidity | 50 | 10 | > th | dose dependent | rect. | 13 | 19 |
| 3 | 491.86 | humidity | 70 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 21 | 495.73 | radiation | 10 | 90 | < th | dose independent | rect. | 11 | 21 |
| 23 | 496.05 | radiation | 10 | 90 | < th | dose dependent | sin | 1 | NA |
| 31 | 496.99 | radiation | 10 | 90 | > th | dose independent | sin | 1 | NA |
| 33 | 497.09 | radiation | 10 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 41 | 497.83 | radiation | 10 | 90 | > th | dose independent | rect. | 7 | 11 |
| 56 | 498.00 | humidity | 80 | 30 | > th | dose independent | rect. | 5 | 15 |
| 57 | 498.05 | humidity | 70 | 10 | > th | dose independent | rect. | 12 | 20 |
| 59 | 498.14 | humidity | 70 | 90 | > th | dose independent | rect. | 12 | 20 |
| 63 | 498.26 | radiation | 10 | 90 | < th | dose dependent | rect. | 4 | 14 |
| 65 | 498.35 | humidity | 70 | 10 | > th | dose dependent | sin | 0 | NA |
| 66 | 498.36 | radiation | 10 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 78 | 498.78 | radiation | 10 | 90 | > th | dose independent | rect. | 16 | 23 |
| 81 | 498.87 | radiation | 10 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 91 | 499.51 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 7 |
| 107 | 500.20 | radiation | 10 | 90 | > th | dose independent | no | NA | NA |
| 203 | 500.73 | humidity | 70 | 10 | > th | dose dependent | rect. | 2 | 18 |
| 217 | 501.01 | humidity | 50 | 10 | > th | dose dependent | rect. | 12 | 8 |
| 235 | 501.41 | radiation | 20 | 30 | < th | dose dependent | no | NA | NA |
| 259 | 501.62 | humidity | 50 | 90 | > th | dose dependent | rect. | 12 | 8 |
| 263 | 501.67 | radiation | 20 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 274 | 501.93 | radiation | 10 | 90 | < th | dose independent | rect. | 4 | 14 |
| 275 | 501.98 | temperature | 25 | 10 | < th | dose independent | rect. | 13 | 7 |
| 313 | 502.85 | humidity | 80 | 30 | > th | dose independent | rect. | 2 | 18 |
| 340 | 503.43 | radiation | 10 | 270 | < th | dose independent | rect. | 1 | 16 |
| 350 | 503.58 | radiation | 10 | 90 | < th | dose independent | sin | 1 | NA |
| 406 | 504.48 | humidity | 50 | 270 | > th | dose dependent | rect. | 1 | 17 |
| 410 | 504.54 | radiation | 10 | 90 | < th | dose independent | rect. | 9 | 23 |
| 445 | 505.10 | wind | 7 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 460 | 505.46 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 13 | 19 |
| 464 | 505.52 | wind | 9 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 466 | 505.54 | wind | 7 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 482 | 505.72 | radiation | 20 | 270 | < th | dose dependent | rect. | 11 | 7 |
| 486 | 505.83 | radiation | 10 | 10 | > th | dose independent | sin | 1 | NA |
| 493 | 505.89 | radiation | 10 | 270 | < th | dose dependent | rect. | 9 | 9 |
| 514 | 506.06 | wind | 7 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 628 | 507.14 | wind | 5 | 90 | < th | dose independent | rect. | 7 | 21 |
| 636 | 507.28 | radiation | 20 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 642 | 507.36 | wind | 9 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 645 | 507.37 | wind | 7 | 270 | < th | dose independent | rect. | 5 | 22 |
| 662 | 507.59 | radiation | 10 | 90 | < th | dose independent | no | NA | NA |
| 708 | 508.07 | humidity | 50 | 270 | > th | dose independent | rect. | 2 | 16 |
| 710 | 508.08 | radiation | 10 | 90 | > th | dose independent | rect. | 13 | 23 |
| 783 | 508.77 | radiation | 10 | 720 | < th | dose independent | rect. | 11 | 10 |
| 827 | 509.05 | radiation | 10 | 10 | > th | dose independent | no | NA | NA |
| 910 | 509.08 | humidity | 80 | 10 | < th | dose independent | sin | 0 | NA |
| 921 | 509.21 | radiation | 10 | 90 | < th | dose independent | rect. | 15 | 23 |
| 965 | 509.54 | humidity | 60 | 10 | > th | dose dependent | rect. | 10 | 22 |
| 971 | 509.61 | humidity | 80 | 10 | > th | dose independent | sin | 0 | NA |
| 973 | 509.64 | wind | 3 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 987 | 509.76 | wind | 3 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 988 | 509.76 | wind | 3 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 994 | 509.83 | radiation | 10 | 10 | < th | dose independent | sin | 1 | NA |