Os09g0287000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ethylene-responsive transcription factor 5 (Ethylene-responsive element binding factor 5) (EREBP-5) (AtERF5).
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Os09g0287000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ethylene-responsive transcription factor 5 (Ethylene-responsive element binding factor 5) (EREBP-5) (AtERF5).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 538.43 | 1.09 | 8.98 | 0.929 | 13.5 | 4.82 | -2 | -3.41 | 0.163 | 15.5 | 2.032 | 306 | 21 | 17.2 |
| 539.86 | 1.08 | 8.97 | 0.996 | 14.1 | 5.35 | 1.7 | -- | 0.163 | 15.5 | 2.089 | 329 | 20.6 | 17.5 |
| 538.77 | 1.08 | 8.97 | 0.93 | 13.6 | 4.86 | -- | -1.58 | 0.168 | 15.5 | 2.19 | 308 | 20.9 | 17.1 |
| 546.68 | 1.09 | 8.97 | 1.01 | 14.2 | 5.34 | -- | -- | 0.166 | 15.5 | 2.13 | 329 | 20.5 | 17.5 |
| 890.91 | 1.39 | 8.93 | 0.127 | -- | 10.2 | -- | -7.19 | -0.103 | -- | 300 | 1009 | 22.6 | 17 |
| 721.11 | 1.26 | 8.97 | 0.783 | 8.39 | -- | 0.701 | -- | 0.06 | 15.4 | -- | -- | -- | -- |
| 722.66 | 1.26 | 8.96 | 0.796 | 8.39 | -- | -- | -- | 0.0641 | 15.4 | -- | -- | -- | -- |
| 699.42 | 1.23 | 8.88 | 0.856 | -- | 10.3 | -- | -- | 0.212 | -- | 351.9 | 1002 | 22.7 | 16.9 |
| 571.43 | 1.11 | 9.01 | -- | 14.2 | 5.42 | -- | -- | 0.0393 | 15.5 | 2.152 | 327 | 20.6 | 16.5 |
| 4691.7 | 3.2 | 8.97 | 0.44 | -- | -- | -- | -- | -0.158 | -- | -- | -- | -- | -- |
| 739.35 | 1.27 | 8.98 | -- | 8.38 | -- | -- | -- | -0.0245 | 15.4 | -- | -- | -- | -- |
| 631.27 | 1.17 | 8.9 | -- | -- | 9.13 | -- | -- | 0.114 | -- | 426.7 | 829 | 0.617 | 16.1 |
| 4696.82 | 3.2 | 8.98 | -- | -- | -- | -- | -- | -0.206 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 545.87 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 19 | 7 |
| 2 | 554.70 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 5 |
| 4 | 557.19 | radiation | 1.0 | 270 | < th | dose independent | rect. | 21 | 17 |
| 5 | 557.35 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 21 | 17 |
| 13 | 560.21 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 3 |
| 16 | 560.52 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 5 |
| 17 | 560.56 | temperature | 15.0 | 270 | > th | dose independent | rect. | 18 | 3 |
| 24 | 563.06 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 5 |
| 25 | 563.06 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 5 |
| 26 | 564.47 | wind | 1.0 | 270 | > th | dose independent | rect. | 17 | 5 |
| 30 | 565.31 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 3 |
| 31 | 565.31 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 3 |
| 34 | 565.60 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 16 | 6 |
| 36 | 566.03 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 4 | 9 |
| 39 | 567.08 | radiation | 10.0 | 270 | < th | dose independent | rect. | 17 | 4 |
| 44 | 567.20 | temperature | 10.0 | 270 | > th | dose independent | rect. | 22 | 19 |
| 46 | 567.32 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 5 |
| 53 | 567.67 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 17 | 4 |
| 58 | 568.35 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 5 |
| 66 | 569.17 | wind | 9.0 | 270 | < th | dose independent | rect. | 22 | 19 |
| 67 | 569.21 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 22 | 19 |
| 81 | 570.43 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 9 |
| 90 | 571.03 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 18 | 3 |
| 104 | 571.63 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 23 | 18 |
| 111 | 572.24 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 19 | 6 |
| 116 | 572.72 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 10 |
| 117 | 572.72 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 10 |
| 119 | 572.87 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 5 |
| 120 | 572.98 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 22 | 19 |
| 124 | 573.44 | humidity | 90.0 | 270 | < th | dose independent | rect. | 17 | 5 |
| 129 | 573.98 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 3 |
| 137 | 574.95 | temperature | 15.0 | 10 | > th | dose independent | rect. | 19 | 6 |
| 142 | 575.19 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 23 | 19 |
| 151 | 576.01 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 19 | 17 |
| 168 | 577.81 | humidity | 90.0 | 270 | < th | dose independent | rect. | 18 | 3 |
| 191 | 579.82 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 1 |
| 198 | 580.25 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 21 | 11 |
| 200 | 580.42 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 1 |
| 201 | 580.42 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 1 |
| 202 | 580.45 | temperature | 15.0 | 270 | > th | dose independent | rect. | 19 | 1 |
| 208 | 581.26 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 22 | 19 |
| 210 | 581.26 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 22 | 19 |
| 221 | 582.31 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 222 | 582.32 | wind | 1.0 | 90 | > th | dose independent | rect. | 1 | 17 |
| 223 | 582.33 | humidity | 50.0 | 270 | > th | dose independent | rect. | 22 | 18 |
| 225 | 582.35 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 19 | 7 |
| 228 | 582.63 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 3 |
| 232 | 582.73 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 19 | 6 |
| 237 | 583.02 | temperature | 15.0 | 270 | > th | dose independent | rect. | 2 | 10 |
| 246 | 583.84 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 18 |
| 250 | 584.42 | wind | 1.0 | 90 | > th | dose independent | rect. | 18 | 7 |
| 252 | 584.45 | humidity | 90.0 | 30 | < th | dose independent | rect. | 19 | 17 |
| 260 | 584.90 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 3 |
| 281 | 585.90 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 19 | 1 |
| 286 | 586.20 | wind | 1.0 | 270 | > th | dose independent | rect. | 22 | 19 |
| 290 | 586.34 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 23 | 15 |
| 292 | 586.44 | wind | 9.0 | 270 | < th | dose dependent | rect. | 17 | 4 |
| 304 | 586.83 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 22 | 21 |
| 310 | 587.05 | humidity | 90.0 | 30 | < th | dose independent | rect. | 19 | 19 |
| 316 | 587.17 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 1 | 17 |
| 345 | 588.71 | wind | 7.0 | 270 | < th | dose independent | rect. | 2 | 10 |
| 354 | 589.11 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 1 |
| 357 | 589.14 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 1 |
| 358 | 589.14 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 1 |
| 359 | 589.14 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 1 |
| 361 | 589.14 | radiation | 1.0 | 270 | < th | dose independent | rect. | 19 | 1 |
| 366 | 589.14 | temperature | 10.0 | 270 | > th | dose independent | rect. | 20 | 23 |
| 367 | 589.14 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 19 | 1 |
| 375 | 589.34 | temperature | 30.0 | 30 | < th | dose independent | rect. | 18 | 7 |
| 388 | 589.58 | temperature | 25.0 | 10 | > th | dose independent | rect. | 19 | 17 |
| 392 | 589.64 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 18 | 3 |
| 402 | 589.91 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 23 | 19 |
| 405 | 589.97 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 19 | 7 |
| 452 | 591.03 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 19 | 7 |
| 462 | 591.24 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 19 | 7 |
| 465 | 591.24 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 19 | 7 |
| 469 | 591.24 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 19 | 7 |
| 471 | 591.24 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 19 | 7 |
| 472 | 591.24 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 19 | 7 |
| 493 | 591.24 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 2 | 17 |
| 497 | 591.34 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 23 | 13 |
| 509 | 591.77 | radiation | 1.0 | 90 | < th | dose independent | rect. | 17 | 8 |
| 513 | 591.86 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 17 | 8 |
| 519 | 592.01 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 16 |
| 520 | 592.01 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 16 |
| 556 | 593.03 | humidity | 60.0 | 90 | > th | dose independent | rect. | 18 | 7 |
| 560 | 593.06 | humidity | 50.0 | 10 | > th | dose independent | rect. | 19 | 6 |
| 562 | 593.06 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 19 | 6 |
| 563 | 593.06 | radiation | 1.0 | 10 | < th | dose independent | rect. | 19 | 6 |
| 568 | 593.06 | temperature | 10.0 | 10 | > th | dose independent | rect. | 1 | 18 |
| 570 | 593.06 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 1 | 18 |
| 571 | 593.06 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 19 | 6 |
| 588 | 593.36 | wind | 9.0 | 10 | < th | dose independent | rect. | 19 | 6 |
| 593 | 593.45 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 10 |
| 594 | 593.45 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 10 |
| 595 | 593.45 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 14 |
| 625 | 594.02 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 19 | 6 |
| 626 | 594.02 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 19 | 6 |
| 631 | 594.11 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 14 |
| 680 | 594.80 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 23 | 12 |
| 741 | 596.45 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 1 | 18 |
| 776 | 597.20 | wind | 9.0 | 90 | < th | dose independent | rect. | 1 | 17 |
| 833 | 597.92 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 14 |
| 844 | 598.14 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 4 | 21 |
| 851 | 598.40 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 19 | 1 |
| 857 | 598.51 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 7 | 17 |
| 867 | 598.77 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 18 |
| 870 | 598.79 | wind | 1.0 | 270 | > th | dose dependent | rect. | 18 | 3 |
| 935 | 600.16 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 16 |
| 965 | 600.83 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 1 | 18 |
| 966 | 600.83 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 1 | 18 |