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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0361700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to EREBP-2 protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.5 (0.0778) R2 : 0.398
β1 : -1.43 (0.284) R2dD : 0.0351 R2D : -0.0285
β2 : 12.8 (0.992) R2dC : 5.56 R2C : -6.62
β3 : 16.4 (1.13) R2dE : 7.04 R2E : -5.32
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -6.39 (0.985) R2dD*E : 0.0481 R2D*E : -0.000741
γ1 : -0.377 (0.165) R2dN8 : 0.0113 R2N8 : -0.00373
σ : 1.44
deviance : 957.4
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_____
C
peak time of C : 16.4
E
wheather : radiation
threshold : 9.844
memory length : 739
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15.9
open length of G : 10.7

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
954.73 1.45 4.51 -1.52 13.1 16.9 -6.41 -13.2 -0.421 16.5 9.95 729 16 11
991.3 1.47 4.6 -1.04 15.5 19.4 4.35 -- -0.222 16.7 9.923 771 16 10.8
957.4 1.44 4.5 -1.43 12.8 16.4 -- -6.39 -0.377 16.4 9.844 739 15.9 10.7
1032.39 1.5 4.45 -1.33 12.6 16.1 -- -- -0.362 16.4 9.85 739 15.9 10.7
1401.94 1.75 4.32 -0.831 -- 1.18 -- 0.617 -0.51 -- 7.449 5977 15.9 10.9
1207.04 1.63 4.37 -0.967 2.33 -- -1.4 -- -0.574 0.477 -- -- -- --
1214.71 1.63 4.37 -0.91 2.33 -- -- -- -0.565 0.277 -- -- -- --
1189.9 1.61 4.3 -0.754 -- 2.18 -- -- -0.621 -- 50.43 362 15.6 11.1
1077.89 1.53 4.43 -- 12.3 15.7 -- -- -0.231 16.5 8.722 735 15.9 10.7
1557.13 1.84 4.32 -0.833 -- -- -- -- -0.528 -- -- -- -- --
1236.54 1.64 4.35 -- 2.32 -- -- -- -0.463 0.256 -- -- -- --
1186.01 1.6 4.31 -- -- 1.97 -- -- -0.388 -- 91.12 162 17.4 10.6
1575.43 1.85 4.3 -- -- -- -- -- -0.436 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 960.33 radiation 10 720 < th dose independent rect. 16 11
2 962.61 temperature 20 90 > th dose independent rect. 21 9
4 969.24 temperature 20 90 > th dose independent rect. 23 7
5 970.62 radiation 10 720 < th dose independent rect. 16 3
6 972.43 radiation 10 720 < th dose independent rect. 16 14
8 973.56 radiation 10 720 < th dose independent rect. 14 14
9 973.79 radiation 10 720 < th dose independent rect. 14 6
21 986.51 radiation 10 720 < th dose independent rect. 14 16
38 993.95 humidity 70 720 > th dose independent rect. 16 4
39 994.08 humidity 60 720 > th dose dependent rect. 18 2
44 995.21 humidity 70 720 > th dose independent rect. 17 11
71 1007.04 temperature 30 720 < th dose independent rect. 18 10
79 1009.78 radiation 20 1440 < th dose independent rect. 11 5
83 1010.28 wind 1 270 < th dose independent rect. 22 6
96 1014.16 humidity 50 720 > th dose dependent rect. 16 12
104 1015.73 temperature 20 30 > th dose independent rect. 1 5
108 1016.78 radiation 20 1440 < th dose independent rect. 11 2
113 1017.14 radiation 10 720 < th dose dependent rect. 16 12
115 1017.30 radiation 40 1440 < th dose dependent rect. 11 2
123 1018.53 wind 1 270 < th dose independent rect. 1 1
126 1018.72 temperature 30 720 < th dose independent rect. 18 1
127 1018.79 radiation 20 1440 < th dose independent rect. 11 13
128 1018.79 radiation 20 1440 < th dose independent rect. 11 18
133 1018.93 radiation 20 1440 < th dose independent rect. 11 10
139 1019.04 radiation 20 1440 < th dose independent rect. 11 16
144 1019.26 radiation 10 720 < th dose independent sin 14 NA
149 1019.49 radiation 40 1440 < th dose dependent rect. 11 4
169 1021.16 radiation 10 1440 < th dose independent rect. 13 11
175 1021.39 radiation 10 1440 < th dose independent sin 18 NA
206 1021.95 wind 1 270 < th dose independent rect. 16 12
231 1022.75 radiation 1 1440 > th dose dependent rect. 11 4
241 1023.02 wind 1 90 < th dose independent rect. 1 4
286 1025.33 radiation 10 720 < th dose dependent rect. 14 14
292 1025.76 radiation 10 720 < th dose dependent rect. 16 3
304 1026.26 temperature 20 90 > th dose independent sin 10 NA
331 1027.00 radiation 30 1440 < th dose dependent rect. 8 16
336 1027.12 radiation 30 1440 < th dose dependent rect. 8 13
339 1027.12 radiation 30 1440 < th dose dependent rect. 8 21
341 1027.20 radiation 30 1440 < th dose dependent rect. 8 11
345 1027.23 radiation 30 1440 < th dose dependent rect. 8 19
381 1027.94 radiation 30 1440 < th dose dependent sin 22 NA
415 1028.37 temperature 30 720 < th dose independent rect. 17 3
417 1028.39 wind 1 270 > th dose independent sin 16 NA
456 1029.81 wind 7 720 < th dose independent rect. 19 14
466 1030.04 radiation 20 1440 > th dose independent rect. 11 2
573 1031.86 radiation 20 1440 < th dose independent rect. 2 14
577 1031.88 temperature 20 10 > th dose independent rect. 3 1
582 1031.93 radiation 20 1440 < th dose independent rect. 4 12
587 1031.99 radiation 20 1440 < th dose independent rect. 20 20
600 1032.16 radiation 30 1440 < th dose dependent rect. 17 22
617 1032.41 radiation 1 1440 > th dose dependent rect. 11 8
667 1032.73 radiation 30 1440 < th dose dependent rect. 2 13
672 1032.77 atmosphere 1010 10 < th dose dependent rect. 20 10
683 1032.82 radiation 30 1440 < th dose dependent rect. 4 12
684 1032.83 radiation 10 720 < th dose dependent rect. 14 6
704 1032.89 radiation 30 1440 < th dose dependent rect. 20 20
711 1032.95 radiation 30 1440 < th dose dependent rect. 22 18
779 1033.82 radiation 20 1440 > th dose independent rect. 11 5
819 1034.26 atmosphere 1005 720 < th dose independent rect. 19 3
848 1034.52 radiation 30 1440 < th dose dependent rect. 2 22
859 1034.60 radiation 30 1440 < th dose dependent rect. 4 20
861 1034.62 radiation 30 1440 < th dose dependent rect. 2 19
899 1034.79 radiation 30 1440 < th dose dependent rect. 4 23
902 1034.81 radiation 30 1440 < th dose dependent no NA NA
903 1034.81 radiation 30 1440 < th dose dependent rect. 22 23
909 1034.85 wind 9 720 > th dose independent rect. 18 3
959 1035.15 radiation 20 1440 < th dose independent rect. 2 22
971 1035.22 radiation 20 1440 < th dose independent rect. 4 20
981 1035.24 radiation 20 1440 < th dose independent rect. 2 19
991 1035.30 radiation 20 1440 < th dose independent rect. 4 17