BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0361700 Os05g0361700|AK100184
(198 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0361700 Similar to EREBP-2 protein (Fragment) 132 2e-31
Os07g0674800 Similar to AP2 domain containing protein RAP2.... 83 1e-16
Os01g0313300 Similar to EREBP-3 protein (Fragment) 78 4e-15
Os07g0617000 Similar to Ethylene response factor 2 74 7e-14
AK100167 73 1e-13
Os06g0194000 Similar to Ethylene-responsive transcription f... 73 1e-13
Os09g0434500 Similar to Ethylene response factor 2 73 2e-13
Os02g0782700 Similar to Transcription factor EREBP1 73 2e-13
Os04g0398000 Pathogenesis-related transcriptional factor an... 69 2e-12
Os03g0341000 Similar to AP2 domain containing protein RAP2.... 67 7e-12
Os03g0183000 Similar to AP2 domain containing protein RAP2.... 67 9e-12
Os12g0168100 Similar to AP2 domain containing protein RAP2.... 64 6e-11
Os09g0457900 Similar to AP2 domain containing protein RAP2.... 64 7e-11
>Os05g0361700 Similar to EREBP-2 protein (Fragment)
Length = 198
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/198 (46%), Positives = 93/198 (46%)
Query: 1 MCGGAIIADFVPPAGARRAAASDISDNAVLXXXXXXXXXXXXXXXPAPGRKTAYRGIRRR 60
MCGGAIIADFVPPAGARRAAASDISDNAVL PAPGRKTAYRGIRRR
Sbjct: 1 MCGGAIIADFVPPAGARRAAASDISDNAVLSAAGAGDESFAAAKAPAPGRKTAYRGIRRR 60
Query: 61 PWGRWAAEIRDPRKGARVWLGXXXXXXXXXXXXXXXXXXIRGAKAKLNFXXXXXXXXXXX 120
PWGRWAAEIRDPRKGARVWLG IRGAKAKLNF
Sbjct: 61 PWGRWAAEIRDPRKGARVWLGTYATAEEAARAYDVAARDIRGAKAKLNFPPTIGAAAAPP 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLRECMSXXXXXXXXXXX 180
QLRECMS
Sbjct: 121 PPKKRRKAAAAANHHHHHHQQESSGSSSASSLPPTPPPAAEHQLRECMSGLEAFLGLEEE 180
Query: 181 XXXXXXXXPWDAVDMMLE 198
PWDAVDMMLE
Sbjct: 181 EDDGGAGEPWDAVDMMLE 198
>Os07g0674800 Similar to AP2 domain containing protein RAP2.2 (Fragment)
Length = 216
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 62/126 (49%), Gaps = 17/126 (13%)
Query: 1 MCGGAIIADFVPPAGARRAA--------ASDISDNAVLXXXXXXXXXXXXXXXPAPG--- 49
MCGGAII+DF+P A RAA ASD +A P
Sbjct: 1 MCGGAIISDFIPQREAHRAATGSKRALCASDFWPSASQEAADFDHLTAPCTFTPDQAAEE 60
Query: 50 ------RKTAYRGIRRRPWGRWAAEIRDPRKGARVWLGXXXXXXXXXXXXXXXXXXIRGA 103
RKT YRGIRRRPWG+WAAEIRDP KGARVWLG IRGA
Sbjct: 61 PTKKRERKTLYRGIRRRPWGKWAAEIRDPAKGARVWLGTFATAEAAARAYDRAARRIRGA 120
Query: 104 KAKLNF 109
KAK+NF
Sbjct: 121 KAKVNF 126
>Os01g0313300 Similar to EREBP-3 protein (Fragment)
Length = 207
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 59/117 (50%), Gaps = 20/117 (17%)
Query: 1 MCGGAIIADFVPPAGARRAAASDISDNAVLXXXXXXXXXXXXXXXPAPG--------RKT 52
MCGGAII D++P RR ASD +A PAP RK
Sbjct: 1 MCGGAIIYDYIP--ARRRLCASDFWPDA----------DDSDPHTPAPEKPPRAKRERKN 48
Query: 53 AYRGIRRRPWGRWAAEIRDPRKGARVWLGXXXXXXXXXXXXXXXXXXIRGAKAKLNF 109
YRGIR+RPWG+WAAEIRDP KG RVWLG IRGAKAK+NF
Sbjct: 49 QYRGIRQRPWGKWAAEIRDPVKGVRVWLGTYPTAEAAARAYDRAARRIRGAKAKVNF 105
>Os07g0617000 Similar to Ethylene response factor 2
Length = 342
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 39/60 (65%)
Query: 50 RKTAYRGIRRRPWGRWAAEIRDPRKGARVWLGXXXXXXXXXXXXXXXXXXIRGAKAKLNF 109
RKT YRGIR+RPWG+WAAEIRDPRKG RVWLG IRG KAK+NF
Sbjct: 108 RKTRYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFGTAEEAAMAYDVEARRIRGKKAKVNF 167
>AK100167
Length = 571
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 38/60 (63%)
Query: 50 RKTAYRGIRRRPWGRWAAEIRDPRKGARVWLGXXXXXXXXXXXXXXXXXXIRGAKAKLNF 109
RK +RGIR+RPWG+WAAEIRDPRKG RVWLG IRG KAK+NF
Sbjct: 111 RKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSPEEAARAYDAEARRIRGKKAKVNF 170
>Os06g0194000 Similar to Ethylene-responsive transcription factor 3
(Ethylene-responsive element binding factor 3 homolog)
(EREBP-5) (NtERF5)
Length = 362
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 38/60 (63%)
Query: 50 RKTAYRGIRRRPWGRWAAEIRDPRKGARVWLGXXXXXXXXXXXXXXXXXXIRGAKAKLNF 109
RK +RGIR+RPWG+WAAEIRDPRKG RVWLG IRG KAK+NF
Sbjct: 111 RKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSPEEAARAYDAEARRIRGKKAKVNF 170
>Os09g0434500 Similar to Ethylene response factor 2
Length = 396
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 37/60 (61%)
Query: 50 RKTAYRGIRRRPWGRWAAEIRDPRKGARVWLGXXXXXXXXXXXXXXXXXXIRGAKAKLNF 109
RK YRGIR+RPWG+WAAEIRDP KG RVWLG IRG KAK+NF
Sbjct: 132 RKNQYRGIRQRPWGKWAAEIRDPSKGVRVWLGTYNTAEEAARAYDAEARKIRGKKAKVNF 191
>Os02g0782700 Similar to Transcription factor EREBP1
Length = 365
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 38/60 (63%)
Query: 50 RKTAYRGIRRRPWGRWAAEIRDPRKGARVWLGXXXXXXXXXXXXXXXXXXIRGAKAKLNF 109
RK +RGIR+RPWG+WAAEIRDPRKG RVWLG IRG KAK+NF
Sbjct: 116 RKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNF 175
>Os04g0398000 Pathogenesis-related transcriptional factor and ERF domain
containing protein
Length = 268
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 38/61 (62%)
Query: 49 GRKTAYRGIRRRPWGRWAAEIRDPRKGARVWLGXXXXXXXXXXXXXXXXXXIRGAKAKLN 108
GR+ YRG+R+RPWG+WAAEIRDP+K ARVWLG +G KAKLN
Sbjct: 62 GRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAAIAYDEAALRFKGTKAKLN 121
Query: 109 F 109
F
Sbjct: 122 F 122
>Os03g0341000 Similar to AP2 domain containing protein RAP2.2 (Fragment)
Length = 243
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 37/58 (63%)
Query: 52 TAYRGIRRRPWGRWAAEIRDPRKGARVWLGXXXXXXXXXXXXXXXXXXIRGAKAKLNF 109
T YRGIRRRPWG+WAAEIRDP KGARVWLG IRG KAK+NF
Sbjct: 65 TLYRGIRRRPWGKWAAEIRDPAKGARVWLGTFATAEAAARAYDRAARRIRGTKAKVNF 122
>Os03g0183000 Similar to AP2 domain containing protein RAP2.6 (Fragment)
Length = 334
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 36/56 (64%)
Query: 54 YRGIRRRPWGRWAAEIRDPRKGARVWLGXXXXXXXXXXXXXXXXXXIRGAKAKLNF 109
+RGIR+RPWG+WAAEIRDP KG RVWLG +RG+KAK+NF
Sbjct: 111 FRGIRQRPWGKWAAEIRDPHKGTRVWLGTFNTPEEAARAYDVEARRLRGSKAKVNF 166
>Os12g0168100 Similar to AP2 domain containing protein RAP2.6 (Fragment)
Length = 341
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 35/56 (62%)
Query: 54 YRGIRRRPWGRWAAEIRDPRKGARVWLGXXXXXXXXXXXXXXXXXXIRGAKAKLNF 109
YRG+R+RPWG+WAAEIRDP K ARVWLG RG++AKLNF
Sbjct: 156 YRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEDAARAYDGAALRFRGSRAKLNF 211
>Os09g0457900 Similar to AP2 domain containing protein RAP2.6 (Fragment)
Length = 274
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 33/56 (58%)
Query: 54 YRGIRRRPWGRWAAEIRDPRKGARVWLGXXXXXXXXXXXXXXXXXXIRGAKAKLNF 109
YRG+R RPWG+WAAEIRDPR+ R WLG RGA+AKLNF
Sbjct: 130 YRGVRHRPWGKWAAEIRDPRRAVRKWLGTFDTAEEAARAYDRAALEFRGARAKLNF 185
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.138 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,361,957
Number of extensions: 80681
Number of successful extensions: 484
Number of sequences better than 1.0e-10: 27
Number of HSP's gapped: 493
Number of HSP's successfully gapped: 27
Length of query: 198
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 102
Effective length of database: 12,023,257
Effective search space: 1226372214
Effective search space used: 1226372214
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 153 (63.5 bits)