Os06g0194000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ethylene-responsive transcription factor 3 (Ethylene-responsive element binding factor 3 homolog) (EREBP-5) (NtERF5).
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Os06g0194000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ethylene-responsive transcription factor 3 (Ethylene-responsive element binding factor 3 homolog) (EREBP-5) (NtERF5).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.58 | 0.341 | 11.5 | -1.69 | 0.303 | 0.733 | -0.312 | -2.04 | -0.552 | 22.7 | 20.31 | 1237 | -- | -- |
| 55.81 | 0.348 | 11.4 | -1.12 | 0.246 | 0.8 | -0.465 | -- | -0.389 | 22.9 | 15.84 | 1067 | -- | -- |
| 52.91 | 0.339 | 11.5 | -1.69 | 0.291 | 0.746 | -- | -2.13 | -0.552 | 22.5 | 20.33 | 1192 | -- | -- |
| 56.7 | 0.351 | 11.4 | -1.12 | 0.278 | 0.834 | -- | -- | -0.397 | 22.5 | 14.82 | 1117 | -- | -- |
| 56.13 | 0.349 | 11.5 | -1.69 | -- | 0.908 | -- | -2.24 | -0.564 | -- | 20.03 | 980 | -- | -- |
| 66.87 | 0.383 | 11.4 | -0.899 | 0.377 | -- | -0.474 | -- | -0.252 | 23.4 | -- | -- | -- | -- |
| 67.8 | 0.386 | 11.4 | -0.879 | 0.381 | -- | -- | -- | -0.249 | 23.1 | -- | -- | -- | -- |
| 59.57 | 0.359 | 11.4 | -1.14 | -- | 1.03 | -- | -- | -0.409 | -- | 13.83 | 899 | -- | -- |
| 83.77 | 0.426 | 11.4 | -- | 0.247 | 0.326 | -- | -- | -0.17 | 0.326 | 27.8 | 1171 | -- | -- |
| 76.83 | 0.41 | 11.4 | -0.87 | -- | -- | -- | -- | -0.246 | -- | -- | -- | -- | -- |
| 88.15 | 0.439 | 11.4 | -- | 0.373 | -- | -- | -- | -0.151 | 22.9 | -- | -- | -- | -- |
| 87.89 | 0.437 | 11.4 | -- | -- | 0.471 | -- | -- | -0.114 | -- | 27.8 | 1056 | -- | -- |
| 96.79 | 0.459 | 11.4 | -- | -- | -- | -- | -- | -0.15 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.80 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 3 |
| 3 | 48.90 | humidity | 60 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 6 | 49.59 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 10 |
| 29 | 50.93 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 39 | 51.09 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 51 | 51.20 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 68 | 51.29 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 154 | 51.82 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 10 |
| 193 | 52.00 | humidity | 90 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 196 | 52.01 | humidity | 70 | 720 | < th | dose independent | sin | 13 | NA |
| 205 | 52.04 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 213 | 52.08 | temperature | 20 | 1440 | > th | dose dependent | sin | 18 | NA |
| 309 | 52.39 | humidity | 70 | 720 | > th | dose independent | sin | 14 | NA |
| 334 | 52.45 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 352 | 52.49 | wind | 3 | 43200 | > th | dose dependent | rect. | 24 | 21 |
| 355 | 52.51 | wind | 3 | 43200 | > th | dose dependent | rect. | 4 | 13 |
| 357 | 52.51 | wind | 3 | 43200 | > th | dose dependent | rect. | 2 | 19 |
| 358 | 52.51 | wind | 3 | 43200 | > th | dose dependent | rect. | 24 | 19 |
| 366 | 52.52 | wind | 3 | 43200 | > th | dose dependent | rect. | 3 | 16 |
| 370 | 52.53 | wind | 5 | 43200 | < th | dose independent | rect. | 3 | 17 |
| 394 | 52.56 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 408 | 52.58 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 2 |
| 450 | 52.63 | wind | 3 | 43200 | > th | dose dependent | sin | 0 | NA |
| 466 | 52.64 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 21 |
| 471 | 52.66 | wind | 5 | 43200 | > th | dose independent | rect. | 4 | 16 |
| 491 | 52.67 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 514 | 52.69 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 21 |
| 534 | 52.71 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 11 |
| 550 | 52.72 | wind | 3 | 43200 | > th | dose dependent | rect. | 4 | 21 |
| 561 | 52.74 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 631 | 52.78 | wind | 5 | 43200 | < th | dose independent | sin | 0 | NA |
| 633 | 52.78 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 21 |
| 647 | 52.79 | wind | 3 | 43200 | > th | dose dependent | no | NA | NA |
| 684 | 52.81 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 686 | 52.82 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 11 |
| 705 | 52.82 | wind | 3 | 43200 | > th | dose dependent | rect. | 18 | 23 |
| 779 | 52.88 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 802 | 52.90 | wind | 5 | 43200 | > th | dose independent | sin | 23 | NA |
| 866 | 52.93 | wind | 9 | 43200 | < th | dose dependent | rect. | 7 | 9 |
| 921 | 52.97 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 15 |
| 929 | 52.97 | humidity | 80 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 941 | 52.98 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 942 | 52.98 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 943 | 52.98 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 12 |
| 978 | 53.00 | humidity | 70 | 720 | < th | dose independent | rect. | 15 | 5 |
| 979 | 53.00 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 6 |