Os09g0434500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ethylene response factor 2.
FiT-DB / Search/ Help/ Sample detail
|
Os09g0434500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Ethylene response factor 2.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 88.03 | 0.441 | 16.3 | -1.93 | 0.217 | 1.54 | -0.801 | -0.846 | -0.691 | 10.5 | 8.522 | 2445 | -- | -- |
| 88.7 | 0.439 | 16.2 | -1.73 | 0.22 | 1.54 | -0.733 | -- | -0.636 | 10.4 | 7.795 | 2438 | -- | -- |
| 90.49 | 0.443 | 16.3 | -1.92 | 0.213 | 1.55 | -- | -0.608 | -0.679 | 11.3 | 7.616 | 2503 | -- | -- |
| 90.84 | 0.444 | 16.2 | -1.76 | 0.217 | 1.55 | -- | -- | -0.638 | 11.3 | 8.075 | 2490 | -- | -- |
| 92.01 | 0.447 | 16.3 | -1.97 | -- | 1.49 | -- | -0.719 | -0.678 | -- | 6.515 | 2901 | -- | -- |
| 135.26 | 0.545 | 16.2 | -1.13 | 0.0665 | -- | -0.872 | -- | -0.32 | 9.26 | -- | -- | -- | -- |
| 137.93 | 0.55 | 16.2 | -1.17 | 0.0785 | -- | -- | -- | -0.322 | 7.78 | -- | -- | -- | -- |
| 92.52 | 0.448 | 16.3 | -1.79 | -- | 1.51 | -- | -- | -0.631 | -- | 8.526 | 2938 | -- | -- |
| 156.14 | 0.582 | 16.2 | -- | 0.0993 | 0.7 | -- | -- | -0.291 | 10.1 | 21.1 | 1901 | -- | -- |
| 138.26 | 0.549 | 16.2 | -1.16 | -- | -- | -- | -- | -0.321 | -- | -- | -- | -- | -- |
| 173.73 | 0.617 | 16.2 | -- | 0.073 | -- | -- | -- | -0.192 | 8.91 | -- | -- | -- | -- |
| 156.35 | 0.582 | 16.2 | -- | -- | 0.722 | -- | -- | -0.331 | -- | 20.52 | 1540 | -- | -- |
| 174.04 | 0.616 | 16.2 | -- | -- | -- | -- | -- | -0.192 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.99 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 2 |
| 2 | 87.03 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 2 |
| 58 | 87.75 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 10 |
| 62 | 87.79 | radiation | 10 | 4320 | < th | dose independent | rect. | 16 | 15 |
| 68 | 87.81 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 10 |
| 94 | 87.92 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 8 |
| 98 | 87.93 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 10 |
| 114 | 87.99 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 8 |
| 131 | 88.04 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 11 |
| 172 | 88.16 | temperature | 15 | 1440 | > th | dose dependent | sin | 9 | NA |
| 210 | 88.22 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 15 |
| 235 | 88.26 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 16 |
| 242 | 88.29 | temperature | 30 | 1440 | < th | dose dependent | sin | 10 | NA |
| 284 | 88.37 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 297 | 88.39 | temperature | 25 | 4320 | < th | dose dependent | sin | 14 | NA |
| 329 | 88.43 | temperature | 10 | 4320 | > th | dose dependent | sin | 13 | NA |
| 337 | 88.45 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 2 |
| 682 | 89.00 | radiation | 10 | 4320 | > th | dose dependent | rect. | 16 | 15 |