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Os03g0183000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to AP2 domain containing protein RAP2.6 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.99 (0.0797) R2 : 0.609
β1 : 2.24 (0.581) R2dD : 0.169 R2D : -0.429
β2 : 0.491 (0.113) R2dC : 0.0167 R2C : -0.0436
β3 : -4.48 (0.332) R2dE : 1.24 R2E : 0.346
β4 : 2.39 (0.469) R2dD*C : 0.0225 R2D*C : -0.0103
β5 : 14 (2.77) R2dD*E : 0.385 R2D*E : -0.592
γ1 : 0.0454 (0.115) R2dN8 : 0.000264 R2N8 : -0.0336
σ : 0.837
deviance : 317.03
__
_____
C
peak time of C : 20.4
E
wheather : temperature
threshold : 28.34
memory length : 1215
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
317.03 0.837 7.99 2.24 0.491 -4.48 2.39 14 0.0454 20.4 28.34 1215 -- --
333.82 0.851 8.31 -0.593 0.476 -3.02 2.69 -- -0.195 20.4 27.96 1181 -- --
334.67 0.852 7.96 2.29 0.49 -4.5 -- 14.3 0.124 20.1 28.2 1220 -- --
354.84 0.877 8.3 -0.639 0.47 -2.96 -- -- -0.218 20.2 28.05 1196 -- --
346.97 0.868 7.94 2.41 -- -4.49 -- 14.7 0.144 -- 28.2 1246 -- --
726.21 1.26 8.27 -1.45 0.464 -- 2.37 -- -0.0401 18.4 -- -- -- --
734.58 1.27 8.26 -1.47 0.566 -- -- -- -0.0275 16.3 -- -- -- --
365.16 0.89 8.3 -0.656 -- -2.87 -- -- -0.264 -- 28.24 1234 -- --
364.81 0.89 8.27 -- 0.467 -3.06 -- -- -0.115 20.2 27.84 1206 -- --
751.87 1.28 8.25 -1.49 -- -- -- -- -0.0425 -- -- -- -- --
791.28 1.32 8.22 -- 0.594 -- -- -- 0.136 16.2 -- -- -- --
375.41 0.902 8.26 -- -- -3.02 -- -- -0.0695 -- 27.55 1244 -- --
810.37 1.33 8.22 -- -- -- -- -- 0.123 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 346.27 temperature 25 720 > th dose dependent rect. 17 16
3 348.52 temperature 25 720 > th dose dependent rect. 16 7
17 359.13 temperature 25 720 > th dose dependent rect. 17 2
18 359.74 temperature 30 1440 > th dose dependent rect. 14 22
22 359.92 temperature 25 720 > th dose dependent sin 13 NA
23 359.99 temperature 30 1440 < th dose independent rect. 18 21
34 361.83 temperature 30 1440 > th dose dependent sin 16 NA
46 362.82 temperature 30 1440 > th dose dependent rect. 10 9
60 362.85 temperature 30 1440 < th dose independent rect. 9 10
61 362.88 temperature 30 1440 < th dose independent rect. 9 15
62 362.88 temperature 30 1440 > th dose dependent rect. 14 5
77 362.89 temperature 30 1440 < th dose independent rect. 9 12
83 362.99 temperature 30 1440 < th dose independent rect. 9 18
100 363.07 temperature 30 1440 < th dose independent rect. 9 22
120 363.22 temperature 30 1440 < th dose independent rect. 13 23
143 363.63 temperature 30 1440 > th dose dependent no NA NA
244 364.41 temperature 30 1440 > th dose independent rect. 17 22
275 364.60 temperature 30 1440 > th dose dependent rect. 17 23
281 364.86 temperature 30 1440 < th dose independent rect. 5 14
284 364.88 temperature 30 1440 < th dose independent rect. 5 19
285 364.90 temperature 30 1440 < th dose independent rect. 5 16
300 364.94 temperature 30 1440 > th dose independent rect. 9 10
328 364.97 temperature 30 1440 < th dose independent rect. 2 17
334 364.99 temperature 30 1440 < th dose independent rect. 2 22
336 365.00 temperature 30 1440 < th dose independent rect. 2 19
356 365.07 temperature 30 1440 < th dose independent rect. 20 23
362 365.10 temperature 30 1440 < th dose independent rect. 23 20
375 365.14 temperature 30 1440 < th dose independent no NA NA
399 365.51 temperature 30 1440 > th dose independent rect. 13 23
413 366.33 temperature 30 1440 < th dose independent rect. 9 6
445 366.72 temperature 30 1440 < th dose independent sin 0 NA
484 367.74 temperature 30 1440 > th dose independent no NA NA
626 369.24 temperature 30 1440 > th dose independent sin 17 NA
631 369.31 temperature 30 1440 > th dose independent sin 13 NA
639 369.68 temperature 30 1440 < th dose independent rect. 5 10
652 369.84 temperature 30 1440 < th dose independent rect. 2 13
666 370.06 temperature 30 1440 < th dose independent rect. 20 19
668 370.08 temperature 30 1440 < th dose independent rect. 23 16
678 370.56 temperature 30 1440 > th dose independent rect. 9 6
742 372.22 radiation 1 720 > th dose dependent rect. 17 13
748 372.27 temperature 30 720 > th dose independent rect. 17 16
760 372.66 temperature 30 720 > th dose independent rect. 17 2
775 372.71 humidity 80 720 < th dose dependent rect. 17 16
905 376.17 temperature 30 1440 < th dose independent rect. 13 11
907 376.19 temperature 30 1440 < th dose independent rect. 13 6
909 376.23 temperature 30 1440 < th dose independent rect. 13 8
911 376.28 temperature 30 1440 > th dose independent rect. 13 6
927 376.29 temperature 30 1440 < th dose independent rect. 13 14
937 376.47 temperature 30 1440 < th dose independent rect. 13 18
952 376.74 temperature 30 1440 > th dose independent rect. 15 4