Os02g0782700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcription factor EREBP1.
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Os02g0782700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcription factor EREBP1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.51 | 0.255 | 12.4 | 0.307 | 0.439 | -0.535 | -0.543 | 0.0163 | 0.163 | 16.8 | 20.9 | 1180 | -- | -- |
| 29.51 | 0.253 | 12.4 | 0.305 | 0.439 | -0.537 | -0.543 | -- | 0.162 | 16.8 | 20.9 | 1179 | -- | -- |
| 30.25 | 0.256 | 12.4 | 0.322 | 0.434 | -0.536 | -- | 0.0814 | 0.165 | 16.7 | 20.83 | 1185 | -- | -- |
| 30.26 | 0.256 | 12.4 | 0.308 | 0.434 | -0.547 | -- | -- | 0.16 | 16.7 | 20.8 | 1173 | -- | -- |
| 40.17 | 0.295 | 12.4 | 0.332 | -- | -0.584 | -- | 0.099 | 0.163 | -- | 20.71 | 1173 | -- | -- |
| 37.1 | 0.286 | 12.4 | 0.0831 | 0.467 | -- | -0.604 | -- | 0.0303 | 16.5 | -- | -- | -- | -- |
| 38.05 | 0.289 | 12.4 | 0.0791 | 0.462 | -- | -- | -- | 0.0272 | 16.3 | -- | -- | -- | -- |
| 40.19 | 0.295 | 12.4 | 0.309 | -- | -0.594 | -- | -- | 0.16 | -- | 20.8 | 1173 | -- | -- |
| 32.28 | 0.265 | 12.4 | -- | 0.438 | -0.429 | -- | -- | 0.105 | 16.8 | 20.81 | 1055 | -- | -- |
| 49.53 | 0.329 | 12.4 | 0.0608 | -- | -- | -- | -- | 0.015 | -- | -- | -- | -- | -- |
| 38.21 | 0.289 | 12.4 | -- | 0.46 | -- | -- | -- | 0.0184 | 16.3 | -- | -- | -- | -- |
| 42.32 | 0.303 | 12.4 | -- | -- | -0.482 | -- | -- | 0.104 | -- | 20.73 | 1153 | -- | -- |
| 49.63 | 0.329 | 12.4 | -- | -- | -- | -- | -- | 0.00821 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.08 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 21 |
| 8 | 23.97 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 19 |
| 59 | 25.92 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 19 |
| 97 | 27.00 | temperature | 20 | 30 | > th | dose independent | rect. | 19 | 19 |
| 99 | 27.01 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 18 |
| 133 | 27.48 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 15 |
| 153 | 27.68 | temperature | 10 | 90 | > th | dose dependent | sin | 7 | NA |
| 165 | 27.78 | temperature | 30 | 90 | < th | dose dependent | sin | 5 | NA |
| 216 | 28.17 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 9 |
| 217 | 28.17 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 11 |
| 241 | 28.36 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 243 | 28.36 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 17 |
| 321 | 28.74 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 15 |
| 352 | 28.88 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 11 |
| 357 | 28.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 7 |
| 358 | 28.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 13 |
| 369 | 28.94 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 371 | 28.94 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 12 |
| 436 | 29.15 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 16 |
| 482 | 29.28 | temperature | 25 | 270 | > th | dose dependent | sin | 9 | NA |
| 497 | 29.33 | atmosphere | 1015 | 30 | < th | dose dependent | rect. | 19 | 19 |
| 541 | 29.42 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 15 |
| 638 | 29.64 | temperature | 20 | 270 | > th | dose independent | rect. | 7 | 15 |
| 643 | 29.64 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 13 |
| 713 | 29.78 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 747 | 29.85 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 754 | 29.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 9 |
| 765 | 29.89 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 12 |
| 781 | 29.92 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 817 | 29.96 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 9 |
| 825 | 29.97 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 12 |
| 828 | 29.97 | temperature | 20 | 720 | > th | dose independent | rect. | 9 | 21 |
| 852 | 29.99 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 18 |
| 871 | 30.00 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 872 | 30.01 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 874 | 30.01 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 6 |
| 877 | 30.01 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 17 |
| 888 | 30.02 | temperature | 20 | 30 | > th | dose independent | rect. | 19 | 7 |
| 923 | 30.04 | temperature | 25 | 270 | < th | dose independent | rect. | 22 | 19 |
| 961 | 30.06 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 971 | 30.07 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 18 |
| 980 | 30.08 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 11 |