FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0674800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to AP2 domain containing protein RAP2.2 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.48 (0.0513) R2 : 0.132
β1 : -0.0341 (0.188) R2dD : 6.75e-05 R2D : -0.000815
β2 : 17.7 (2.18) R2dC : 38.1 R2C : -38.5
β3 : -17.8 (2.17) R2dE : 39.2 R2E : -38.5
β4 : 51.7 (8.45) R2dD*C : 19 R2D*C : -19.1
β5 : -51.7 (8.38) R2dD*E : 19.6 R2D*E : -19.5
γ1 : -0.093 (0.109) R2dN8 : 0.00191 R2N8 : 0.00213
σ : 0.95
deviance : 409.08
__
_____
C
peak time of C : 3.03
E
wheather : wind
threshold : 6.986
memory length : 11
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 3
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
409.08 0.95 3.48 -0.0341 17.7 -17.8 51.7 -51.7 -0.093 3.03 6.986 11 3 --
459.19 1.01 3.47 -0.0648 3.03 -3.09 -0.239 -- -0.106 2.78 6.986 11 3 --
458.86 1.01 3.47 -0.0675 3.12 -3.18 -- -0.391 -0.108 2.78 6.986 11 3 --
441.58 0.979 3.49 -0.0154 4.28 -4.31 -- -- -0.089 3.08 6.231 14 2.83 --
464.28 1 3.51 -0.226 -- -0.0544 -- -1.36 -0.183 -- 1.647 38 2.26 --
460.97 1.01 3.48 -0.124 0.225 -- 1.47 -- -0.137 19.5 -- -- -- --
466.89 1.01 3.48 -0.157 0.228 -- -- -- -0.134 19.2 -- -- -- --
461.78 1.01 3.47 -0.107 -- -0.356 -- -- -0.097 -- 4.2 127 0.000118 --
441.04 0.978 3.45 -- 4.36 -4.43 -- -- -0.0789 3.07 6.4 16 2.91 --
469.63 1.01 3.48 -0.161 -- -- -- -- -0.138 -- -- -- -- --
467.54 1.01 3.48 -- 0.229 -- -- -- -0.116 19.2 -- -- -- --
462.08 1 3.47 -- -- -0.363 -- -- -0.0844 -- 4.2 127 0.000118 --
470.32 1.01 3.47 -- -- -- -- -- -0.12 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 415.50 temperature 30.0 90 < th dose dependent rect. 18 1
2 415.88 temperature 25.0 30 < th dose independent rect. 18 3
7 416.81 wind 7.0 10 < th dose independent sin 9 NA
20 420.53 wind 7.0 10 > th dose independent sin 9 NA
29 423.09 wind 5.0 10 > th dose dependent rect. 18 17
36 424.87 humidity 70.0 90 > th dose independent rect. 18 2
45 425.51 humidity 70.0 30 > th dose dependent rect. 18 2
50 425.66 wind 7.0 10 > th dose independent rect. 18 17
84 429.55 wind 3.0 10 > th dose dependent rect. 10 1
90 429.86 wind 7.0 30 > th dose independent rect. 19 1
116 431.08 wind 7.0 30 > th dose dependent rect. 2 9
123 431.27 humidity 60.0 14400 > th dose independent rect. 21 11
168 432.64 wind 7.0 10 > th dose independent rect. 16 20
169 432.64 wind 7.0 10 > th dose dependent sin 9 NA
179 432.79 atmosphere 1005.0 90 > th dose dependent rect. 18 2
182 432.86 wind 7.0 30 > th dose dependent rect. 19 1
195 433.19 wind 7.0 10 > th dose independent rect. 16 22
206 433.40 wind 7.0 1440 > th dose independent rect. 15 1
215 433.61 wind 7.0 1440 < th dose independent rect. 15 1
233 434.07 wind 7.0 90 < th dose independent rect. 20 23
239 434.16 wind 7.0 30 > th dose independent rect. 1 10
256 434.46 wind 3.0 10 > th dose dependent rect. 8 3
259 434.49 precipitation 0.1 10 > th dose independent rect. 17 3
279 434.49 precipitation 0.1 10 > th dose dependent rect. 17 3
303 434.64 temperature 30.0 270 < th dose independent rect. 16 1
304 434.64 radiation 10.0 4320 < th dose dependent rect. 21 8
311 434.76 temperature 10.0 270 > th dose dependent rect. 10 15
322 434.83 wind 5.0 10 > th dose dependent rect. 16 19
323 434.97 wind 7.0 30 > th dose dependent rect. 9 2
331 435.05 wind 5.0 10 > th dose independent rect. 10 1
353 435.20 humidity 60.0 14400 > th dose independent rect. 24 8
357 435.24 temperature 30.0 270 < th dose independent rect. 15 19
379 435.59 atmosphere 1005.0 90 > th dose independent rect. 19 1
418 435.98 temperature 10.0 1440 > th dose independent rect. 20 1
421 435.98 temperature 30.0 1440 < th dose independent rect. 20 1
426 435.98 humidity 50.0 1440 > th dose independent rect. 20 1
432 435.98 atmosphere 995.0 1440 > th dose independent rect. 20 1
436 435.98 radiation 1.0 1440 < th dose independent rect. 20 1
456 435.98 temperature 10.0 1440 > th dose independent rect. 21 23
459 435.98 radiation 1.0 1440 < th dose dependent rect. 20 1
470 436.05 precipitation 0.1 10 > th dose independent rect. 19 1
480 436.05 temperature 30.0 270 < th dose dependent rect. 16 1
481 436.05 precipitation 0.1 10 > th dose dependent rect. 19 1
507 436.17 temperature 30.0 90 < th dose dependent rect. 8 12
542 436.43 radiation 30.0 43200 < th dose independent rect. 17 5
554 436.54 wind 5.0 1440 > th dose dependent rect. 13 3
569 436.64 atmosphere 1005.0 270 > th dose independent rect. 16 4
602 436.91 humidity 60.0 14400 > th dose independent rect. 7 1
611 436.99 wind 5.0 1440 > th dose dependent rect. 13 5
626 437.10 wind 7.0 10 < th dose independent no NA NA
629 437.11 wind 5.0 4320 > th dose independent rect. 18 3
641 437.19 wind 7.0 1440 < th dose independent rect. 17 1
645 437.25 wind 7.0 720 < th dose independent rect. 4 18
648 437.26 wind 5.0 4320 < th dose independent rect. 18 4
667 437.34 wind 5.0 1440 > th dose dependent rect. 17 1
671 437.38 humidity 70.0 14400 < th dose dependent rect. 21 1
690 437.43 wind 7.0 10 < th dose independent rect. 20 23
721 437.70 radiation 1.0 4320 < th dose independent rect. 21 8
746 437.88 temperature 20.0 30 > th dose dependent rect. 10 22
762 437.96 wind 5.0 10 > th dose dependent rect. 16 22
771 438.02 humidity 60.0 14400 < th dose independent rect. 6 1
773 438.02 humidity 60.0 14400 < th dose independent rect. 20 1
775 438.02 radiation 20.0 14400 > th dose independent rect. 17 1
826 438.02 humidity 60.0 14400 < th dose dependent rect. 6 1
830 438.02 radiation 20.0 14400 > th dose dependent rect. 17 1
887 438.07 humidity 70.0 14400 > th dose independent rect. 21 6
928 438.28 radiation 10.0 4320 < th dose dependent rect. 24 5
934 438.31 wind 9.0 1440 < th dose dependent rect. 13 5
961 438.47 radiation 1.0 1440 < th dose independent rect. 11 1
964 438.47 radiation 1.0 1440 < th dose dependent rect. 11 1
985 438.58 temperature 10.0 90 > th dose dependent rect. 20 23