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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0313300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to EREBP-3 protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.92 (0.0553) R2 : 0.588
β1 : -- (--) R2dD : -- R2D : --
β2 : 8.25 (0.386) R2dC : 2.98 R2C : -0.821
β3 : -6.19 (0.421) R2dE : 1.41 R2E : -2.39
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00554 (0.117) R2dN8 : 2.66e-06 R2N8 : -0.00732
σ : 1.04
deviance : 495.26
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_____
C
peak time of C : 17.1
E
wheather : temperature
threshold : 6.717
memory length : 313
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6.15
open length of G : 15.7

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
485.24 1.03 5.92 0.097 7.75 -5.84 3.11 -1.31 0.0335 17.1 9.922 288 6.1 16
484.43 1.03 5.91 0.142 7.77 -5.87 2.28 -- 0.0526 17.1 9.607 298 6.1 16
489 1.03 5.91 0.255 7.95 -5.98 -- 1.76 0.0384 17.1 8.225 293 6.32 15.7
494.91 1.04 5.92 0.138 8.33 -6.29 -- -- -0.00542 17.1 6.753 314 6.17 15.7
644.07 1.18 5.56 -1.46 -- -4.49 -- 0.308 0.254 -- 8.753 461 17 17.2
697.01 1.24 5.92 -0.549 3.05 -- 1.34 -- -0.298 17.9 -- -- -- --
701.17 1.24 5.91 -0.557 3.06 -- -- -- -0.292 17.8 -- -- -- --
526.17 1.07 5.76 0.136 -- -4.92 -- -- 0.138 -- -2.018 543 15.5 19.5
495.26 1.04 5.92 -- 8.25 -6.19 -- -- -0.00554 17.1 6.717 313 6.15 15.7
1185.34 1.61 5.86 -0.651 -- -- -- -- -0.364 -- -- -- -- --
709.35 1.25 5.9 -- 3.06 -- -- -- -0.23 17.8 -- -- -- --
526.76 1.07 5.75 -- -- -4.89 -- -- 0.142 -- -2.16 542 15.5 19.5
1196.52 1.61 5.85 -- -- -- -- -- -0.291 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 491.03 temperature 10 270 > th dose dependent rect. 6 16
4 500.92 temperature 30 10 < th dose dependent rect. 24 20
7 502.21 temperature 30 90 < th dose dependent rect. 1 18
11 503.86 temperature 30 270 < th dose dependent rect. 23 18
17 506.63 temperature 10 270 > th dose dependent rect. 3 21
22 507.59 temperature 30 90 < th dose dependent rect. 1 16
36 513.77 temperature 30 10 < th dose dependent rect. 1 17
38 514.02 temperature 20 10 > th dose dependent rect. 6 19
39 514.05 temperature 15 10 > th dose dependent rect. 4 21
61 517.30 temperature 20 30 > th dose dependent rect. 17 21
68 518.28 temperature 20 270 > th dose dependent rect. 16 20
73 518.99 temperature 15 270 > th dose dependent rect. 17 18
77 519.98 temperature 25 90 < th dose independent rect. 23 22
84 520.61 temperature 15 10 > th dose dependent rect. 4 23
85 520.66 temperature 10 270 > th dose dependent rect. 15 22
94 521.79 temperature 15 270 > th dose dependent rect. 3 9
97 522.11 temperature 20 10 > th dose dependent rect. 15 23
102 523.01 temperature 15 10 > th dose dependent rect. 8 17
185 531.40 temperature 20 10 > th dose dependent rect. 17 23
197 532.14 temperature 10 10 > th dose dependent sin 3 NA
208 533.00 temperature 25 30 > th dose independent rect. 17 21
239 534.86 temperature 30 10 < th dose dependent sin 3 NA
255 536.08 temperature 20 10 > th dose dependent rect. 4 10
262 536.34 temperature 25 90 > th dose independent rect. 15 23
388 542.22 temperature 20 10 > th dose dependent no NA NA
397 542.38 temperature 30 10 < th dose dependent rect. 22 22
424 543.44 temperature 20 10 > th dose dependent rect. 20 18
436 544.05 atmosphere 1005 270 > th dose dependent rect. 11 7
485 545.98 temperature 20 10 > th dose dependent rect. 8 23
518 547.06 temperature 30 270 < th dose independent rect. 11 6
644 550.55 temperature 30 720 < th dose dependent sin 4 NA
681 551.88 temperature 25 90 > th dose independent rect. 3 23
686 552.07 temperature 30 10 < th dose dependent rect. 7 23
690 552.19 temperature 15 720 > th dose dependent rect. 24 16
732 553.35 temperature 25 30 > th dose independent rect. 8 23
747 554.02 temperature 25 90 > th dose independent no NA NA
751 554.08 temperature 25 270 > th dose dependent sin 10 NA
773 554.54 temperature 30 10 < th dose dependent rect. 11 23
776 554.56 temperature 30 10 < th dose dependent rect. 9 23
778 554.62 wind 7 43200 > th dose independent rect. 17 1
784 554.75 temperature 20 10 > th dose dependent rect. 23 23
836 555.91 wind 7 43200 < th dose independent rect. 17 1
869 556.59 temperature 25 30 > th dose independent rect. 6 23
876 556.74 temperature 20 720 > th dose dependent rect. 21 19
878 556.76 temperature 30 10 < th dose dependent no NA NA
907 557.43 temperature 25 90 < th dose independent rect. 9 23
914 557.53 temperature 30 10 < th dose dependent rect. 13 23
941 558.02 temperature 25 90 > th dose independent rect. 24 23
955 558.23 wind 5 43200 > th dose independent rect. 20 1
963 558.37 wind 5 43200 < th dose independent rect. 20 1