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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0657400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ethylene-responsive transcription factor 5 (Ethylene-responsive element binding factor 5) (EREBP-5) (AtERF5).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.55 (0.0389) R2 : 0.217
β1 : 0.738 (0.144) R2dD : 0.05 R2D : 0.0177
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.04 (0.106) R2dE : 0.203 R2E : 0.167
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0249 (0.0888) R2dN8 : 0.000215 R2N8 : -0.00514
σ : 0.712
deviance : 233.61
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 22.27
memory length : 890
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
227.35 0.708 3.58 0.33 0.183 -1.04 -0.241 -1.24 -0.0773 5.44 22.2 923 -- --
231.97 0.709 3.54 0.743 0.17 -1.06 -0.336 -- 0.0276 4.64 22.2 928 -- --
227.37 0.702 3.58 0.342 0.191 -1.05 -- -1.23 -0.0713 6.06 22.21 959 -- --
232 0.709 3.54 0.738 0.187 -1.04 -- -- 0.022 6.04 22.28 940 -- --
229.18 0.705 3.58 0.347 -- -1.04 -- -1.2 -0.0657 -- 22.22 904 -- --
276.7 0.78 3.62 0.372 0.294 -- 0.631 -- -0.329 9.25 -- -- -- --
278 0.781 3.62 0.392 0.299 -- -- -- -0.329 8.66 -- -- -- --
233.61 0.712 3.55 0.738 -- -1.04 -- -- 0.0249 -- 22.27 890 -- --
244.99 0.729 3.57 -- 0.196 -0.884 -- -- -0.101 6.33 22.35 903 -- --
283.04 0.786 3.63 0.393 -- -- -- -- -0.327 -- -- -- -- --
282.06 0.786 3.63 -- 0.3 -- -- -- -0.373 8.57 -- -- -- --
246.76 0.732 3.57 -- -- -0.894 -- -- -0.0944 -- 22.39 856 -- --
287.12 0.791 3.64 -- -- -- -- -- -0.371 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 230.07 temperature 25.0 720 < th dose dependent rect. 14 17
4 230.40 temperature 25.0 720 < th dose dependent rect. 11 20
30 231.41 temperature 25.0 720 < th dose dependent sin 12 NA
47 231.79 temperature 10.0 720 > th dose dependent rect. 19 14
54 231.90 precipitation 0.1 14400 > th dose dependent rect. 21 2
66 232.15 temperature 25.0 720 < th dose dependent rect. 4 23
69 232.24 temperature 25.0 720 < th dose dependent rect. 17 23
73 232.30 temperature 25.0 720 < th dose dependent no NA NA
82 232.47 temperature 10.0 720 > th dose dependent rect. 13 18
83 232.48 precipitation 0.1 14400 > th dose independent rect. 21 2
84 232.49 precipitation 0.1 14400 < th dose independent rect. 21 2
85 232.49 precipitation 0.1 14400 < th dose dependent rect. 21 2
116 232.99 temperature 25.0 720 < th dose dependent rect. 24 23
122 233.13 temperature 15.0 720 > th dose dependent rect. 20 11
184 234.02 temperature 25.0 1440 < th dose dependent rect. 14 10
186 234.03 temperature 10.0 720 > th dose dependent rect. 19 20
193 234.15 precipitation 0.1 43200 > th dose dependent rect. 20 4
291 235.02 temperature 25.0 1440 < th dose dependent rect. 21 2
305 235.14 temperature 10.0 720 > th dose dependent sin 11 NA
325 235.28 temperature 10.0 10 > th dose dependent rect. 3 23
360 235.49 temperature 25.0 720 < th dose dependent rect. 21 6
426 235.95 temperature 20.0 4320 > th dose independent rect. 22 1
457 236.21 temperature 20.0 1440 > th dose dependent rect. 23 6
563 236.78 temperature 20.0 1440 > th dose dependent rect. 1 1
743 237.78 temperature 20.0 4320 < th dose independent rect. 22 1