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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0257500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Transcription factor TSRF1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.52 (0.0593) R2 : 0.442
β1 : -1.56 (0.218) R2dD : 0.0673 R2D : 0.0873
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.04 (0.15) R2dE : 0.222 R2E : 0.23
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 5.88 (0.586) R2dD*E : 0.127 R2D*E : 0.146
γ1 : 0.0723 (0.127) R2dN8 : 0.000732 R2N8 : 0.00271
σ : 1.11
deviance : 566.78
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 43.95
memory length : 111
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 10.9
open length of G : 22.4

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
560.96 1.11 3.54 -1.56 0.534 -2.29 0.0677 5.62 0.08 22 41.93 98 11.2 22
602.83 1.14 3.46 -1.29 0.302 -2 -4.24 -- -0.0101 12.3 92.86 102 12.4 23.5
560.75 1.1 3.54 -1.56 0.545 -2.29 -- 5.69 0.088 21.9 42.04 98 11.2 21.9
688.32 1.22 3.53 -1.55 0.399 -2.35 -- -- 0.0757 21.5 46.21 82 11.1 22.3
566.78 1.11 3.52 -1.56 -- -2.04 -- 5.88 0.0723 -- 43.95 111 10.9 22.4
672.81 1.22 3.5 -1.56 1.57 -- -4.78 -- 0.145 13 -- -- -- --
767.5 1.3 3.51 -1.73 1.59 -- -- -- 0.122 13.3 -- -- -- --
688.48 1.22 3.56 -1.6 -- -2.35 -- -- -0.00745 -- 50.01 98 12.7 23
766.3 1.29 3.52 -- 0.349 -2.31 -- -- 0.213 20.4 49.14 82 11.1 22.3
923.3 1.42 3.54 -1.79 -- -- -- -- 0.0893 -- -- -- -- --
846.64 1.36 3.47 -- 1.62 -- -- -- 0.315 13.4 -- -- -- --
764.33 1.29 3.51 -- -- -2.57 -- -- 0.177 -- 70.27 88 12.8 23
1008.29 1.48 3.49 -- -- -- -- -- 0.288 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 562.03 radiation 20 90 < th dose independent rect. 13 20
2 562.54 radiation 20 90 < th dose independent rect. 13 22
3 564.83 radiation 40 90 < th dose dependent rect. 11 22
4 567.25 radiation 30 90 < th dose dependent rect. 6 13
6 567.84 radiation 40 90 < th dose dependent rect. 13 20
7 568.43 radiation 20 90 < th dose independent rect. 6 13
8 568.54 radiation 20 90 < th dose independent rect. 11 22
9 569.84 radiation 40 270 < th dose independent rect. 11 21
13 571.33 radiation 40 90 < th dose dependent rect. 13 22
18 572.39 radiation 10 90 > th dose independent rect. 9 7
19 573.55 radiation 30 90 < th dose dependent sin 23 NA
26 574.86 radiation 1 90 > th dose dependent rect. 9 8
32 575.51 radiation 20 90 > th dose independent rect. 9 22
33 575.54 radiation 20 90 > th dose independent sin 21 NA
65 577.27 radiation 30 10 < th dose independent rect. 12 21
66 577.40 radiation 1 90 > th dose dependent rect. 9 20
69 577.44 radiation 1 90 > th dose dependent rect. 9 10
108 578.97 radiation 20 90 < th dose independent sin 23 NA
112 579.43 radiation 1 90 > th dose dependent sin 21 NA
121 580.45 humidity 70 90 > th dose independent rect. 13 20
137 581.56 radiation 40 270 < th dose independent rect. 11 8
219 584.22 humidity 80 30 < th dose independent rect. 9 8
224 584.44 radiation 20 90 < th dose independent no NA NA
230 584.78 radiation 20 90 < th dose independent rect. 21 23
231 584.89 humidity 70 90 > th dose independent rect. 11 22
246 585.72 humidity 70 270 > th dose independent rect. 2 16
256 586.30 humidity 70 90 > th dose independent rect. 5 14
297 587.24 radiation 20 90 < th dose independent rect. 24 23
298 587.27 radiation 40 90 < th dose dependent no NA NA
300 587.31 humidity 70 30 > th dose dependent rect. 6 14
314 587.83 radiation 40 270 < th dose dependent rect. 11 8
330 588.10 atmosphere 995 30 > th dose dependent rect. 9 8
418 589.13 radiation 20 90 > th dose independent no NA NA
523 589.44 radiation 20 30 < th dose independent rect. 17 23
525 589.47 radiation 10 90 > th dose dependent rect. 11 23
527 589.56 radiation 20 90 > th dose independent rect. 11 23
537 589.76 atmosphere 995 30 > th dose dependent rect. 9 6
563 590.13 radiation 40 90 < th dose dependent rect. 21 23
588 590.86 humidity 70 270 > th dose dependent rect. 2 15
604 591.29 humidity 80 30 < th dose independent rect. 9 6
611 591.41 radiation 20 90 < th dose independent rect. 13 7
634 591.70 radiation 1 90 > th dose dependent rect. 18 23
635 591.72 radiation 1 90 > th dose dependent rect. 4 13
646 591.76 radiation 20 90 < th dose independent rect. 5 23
660 591.97 atmosphere 1000 30 > th dose independent rect. 9 6
714 592.60 temperature 20 30 > th dose independent rect. 9 6
719 592.66 humidity 90 30 < th dose dependent rect. 9 8
761 593.70 radiation 30 90 < th dose dependent rect. 13 6
801 594.03 radiation 1 90 > th dose dependent no NA NA
890 594.22 temperature 20 30 > th dose independent rect. 9 8
927 594.48 radiation 20 90 < th dose independent rect. 15 23