Os01g0797600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ethylene responsive element binding factor3 (OsERF3).
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Os01g0797600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ethylene responsive element binding factor3 (OsERF3).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 114.58 | 0.503 | 13.7 | -1.18 | 2.13 | -1.26 | 0.694 | -0.149 | -0.269 | 4.35 | 1010 | 5142 | -- | -- |
| 114.63 | 0.499 | 13.7 | -1.22 | 2.13 | -1.25 | 0.702 | -- | -0.277 | 4.35 | 1010 | 5132 | -- | -- |
| 115.87 | 0.501 | 13.7 | -1.19 | 2.13 | -1.26 | -- | -0.155 | -0.272 | 4.33 | 1010 | 5111 | -- | -- |
| 115.95 | 0.502 | 13.7 | -1.22 | 2.13 | -1.25 | -- | -- | -0.278 | 4.32 | 1010 | 5069 | -- | -- |
| 356.72 | 0.88 | 13.7 | -1.06 | -- | -1.38 | -- | -0.363 | -0.119 | -- | 1010 | 4121 | -- | -- |
| 160.36 | 0.594 | 13.6 | -0.835 | 2.18 | -- | 0.678 | -- | 0.000704 | 4.35 | -- | -- | -- | -- |
| 161.6 | 0.595 | 13.6 | -0.841 | 2.18 | -- | -- | -- | -0.00297 | 4.32 | -- | -- | -- | -- |
| 356.88 | 0.88 | 13.7 | -1.16 | -- | -1.39 | -- | -- | -0.0726 | -- | 1010 | 4109 | -- | -- |
| 151.72 | 0.574 | 13.7 | -- | 2.12 | -0.941 | -- | -- | -0.0933 | 4.32 | 1010 | 4642 | -- | -- |
| 418 | 0.955 | 13.7 | -0.755 | -- | -- | -- | -- | 0.0549 | -- | -- | -- | -- | -- |
| 180.26 | 0.628 | 13.6 | -- | 2.17 | -- | -- | -- | 0.0907 | 4.33 | -- | -- | -- | -- |
| 390.04 | 0.92 | 13.7 | -- | -- | -1.12 | -- | -- | 0.0254 | -- | 1010 | 4121 | -- | -- |
| 433.02 | 0.971 | 13.6 | -- | -- | -- | -- | -- | 0.139 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 110.87 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 2 |
| 2 | 111.39 | radiation | 20 | 14400 | < th | dose independent | rect. | 16 | 15 |
| 5 | 111.77 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 9 | 112.83 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 16 |
| 10 | 112.89 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 11 |
| 15 | 113.17 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 35 | 113.73 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 38 | 113.81 | temperature | 25 | 4320 | < th | dose independent | rect. | 16 | 3 |
| 42 | 113.89 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 46 | 113.97 | radiation | 30 | 14400 | < th | dose independent | rect. | 22 | 11 |
| 52 | 114.00 | radiation | 30 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 54 | 114.03 | radiation | 30 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 57 | 114.05 | radiation | 30 | 14400 | < th | dose independent | rect. | 2 | 7 |
| 94 | 114.43 | radiation | 30 | 14400 | < th | dose independent | sin | 12 | NA |
| 100 | 114.62 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 104 | 114.68 | radiation | 10 | 14400 | < th | dose independent | rect. | 13 | 18 |
| 108 | 114.84 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 9 | 2 |
| 137 | 115.16 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 145 | 115.18 | radiation | 1 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 172 | 115.28 | radiation | 30 | 4320 | < th | dose dependent | rect. | 18 | 5 |
| 174 | 115.30 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 179 | 115.33 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 11 |
| 183 | 115.34 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 187 | 115.36 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 188 | 115.36 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 7 |
| 197 | 115.38 | radiation | 1 | 4320 | < th | dose dependent | rect. | 18 | 5 |
| 227 | 115.66 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 2 | 10 |
| 233 | 115.69 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 2 | 18 |
| 235 | 115.70 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 2 | 16 |
| 243 | 115.71 | radiation | 30 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 244 | 115.72 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 255 | 115.74 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 4 | 8 |
| 261 | 115.76 | atmosphere | 1010 | 4320 | > th | dose independent | sin | 3 | NA |
| 287 | 115.79 | radiation | 40 | 14400 | < th | dose dependent | rect. | 17 | 14 |
| 344 | 115.91 | radiation | 10 | 14400 | < th | dose independent | rect. | 13 | 12 |
| 352 | 115.93 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 353 | 115.93 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 354 | 115.93 | radiation | 10 | 14400 | < th | dose independent | rect. | 13 | 6 |
| 382 | 115.95 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 387 | 115.96 | radiation | 40 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 389 | 115.97 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 9 | 3 |
| 417 | 116.05 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 445 | 116.07 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 1 | 19 |
| 451 | 116.09 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 454 | 116.09 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 8 | 12 |
| 486 | 116.11 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 14 | 22 |
| 491 | 116.12 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 8 | 9 |
| 498 | 116.13 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 506 | 116.13 | radiation | 30 | 14400 | < th | dose dependent | rect. | 2 | 5 |
| 517 | 116.15 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 558 | 116.21 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 19 | 23 |
| 563 | 116.22 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 8 | 23 |
| 581 | 116.25 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 24 | 12 |
| 602 | 116.26 | atmosphere | 1010 | 4320 | > th | dose independent | no | NA | NA |
| 621 | 116.27 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 4 | 23 |
| 650 | 116.31 | atmosphere | 1010 | 4320 | < th | dose independent | sin | 2 | NA |
| 651 | 116.31 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 2 | 5 |
| 679 | 116.32 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 8 | 12 |
| 702 | 116.34 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 19 | 17 |
| 783 | 116.40 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 12 | 7 |
| 803 | 116.42 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 8 | 9 |
| 890 | 116.53 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 2 | 4 |
| 911 | 116.55 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 8 | 22 |
| 977 | 116.62 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 14 | 22 |