BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0797600 Os01g0797600|AB036883
(235 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0797600 Ethylene responsive element binding factor3 (O... 293 9e-80
Os05g0497300 Similar to Ethylene response factor 2 154 8e-38
Os02g0189600 Similar to Ethylene response factor 2 (Ethylen... 75 3e-14
Os04g0610400 Similar to AP2 domain containing protein RAP2.... 74 7e-14
Os04g0669200 Similar to Ethylene response factor 2 (Ethylen... 72 3e-13
Os05g0497200 Similar to Ethylene-responsive transcription f... 71 6e-13
Os04g0398000 Pathogenesis-related transcriptional factor an... 70 2e-12
Os05g0361700 Similar to EREBP-2 protein (Fragment) 68 5e-12
Os09g0434500 Similar to Ethylene response factor 2 66 2e-11
Os03g0183000 Similar to AP2 domain containing protein RAP2.... 66 2e-11
Os04g0399800 Similar to Ethylene-responsive transcription f... 65 4e-11
Os09g0457900 Similar to AP2 domain containing protein RAP2.... 65 6e-11
Os02g0594300 Similar to Enhancer of shoot regeneration ESR1 64 6e-11
Os12g0168100 Similar to AP2 domain containing protein RAP2.... 64 6e-11
>Os01g0797600 Ethylene responsive element binding factor3 (OsERF3)
Length = 235
Score = 293 bits (749), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 159/235 (67%), Positives = 159/235 (67%)
Query: 1 MAPRAATVEKVAVAPPTXXXXXXXXXXXXXXPHYRGVRKRPWGRYAAEIRDPAKKSRVWL 60
MAPRAATVEKVAVAPPT PHYRGVRKRPWGRYAAEIRDPAKKSRVWL
Sbjct: 1 MAPRAATVEKVAVAPPTGLGLGVGGGVGAGGPHYRGVRKRPWGRYAAEIRDPAKKSRVWL 60
Query: 61 GXXXXXXXXXXXXXXXXXEFRGAKAKTNFPFASQSMVGCGGSPSSNSTVDTGGGGVQTPM 120
G EFRGAKAKTNFPFASQSMVGCGGSPSSNSTVDTGGGGVQTPM
Sbjct: 61 GTYDTAEEAARAYDAAAREFRGAKAKTNFPFASQSMVGCGGSPSSNSTVDTGGGGVQTPM 120
Query: 121 RAMPLPPTLDLDLFHRXXXXXXXXXXXXRFPFRGYPVARPATHPYFFYEQXXXXXXXXXG 180
RAMPLPPTLDLDLFHR RFPFRGYPVARPATHPYFFYEQ G
Sbjct: 121 RAMPLPPTLDLDLFHRAAAVTAVAGTGVRFPFRGYPVARPATHPYFFYEQAAAAAAAEAG 180
Query: 181 YRMMKLAPPVTXXXXXXXXXXXXXXXXXXXXXXXXTANKAAAFDLDLNRPPPVEN 235
YRMMKLAPPVT TANKAAAFDLDLNRPPPVEN
Sbjct: 181 YRMMKLAPPVTVAAVAQSDSDSSSVVDLAPSPPAVTANKAAAFDLDLNRPPPVEN 235
>Os05g0497300 Similar to Ethylene response factor 2
Length = 236
Score = 154 bits (388), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 97/204 (47%), Positives = 116/204 (56%), Gaps = 7/204 (3%)
Query: 33 HYRGVRKRPWGRYAAEIRDPAKKSRVWLGXXXXXXXXXXXXXXXXXEFRGAKAKTNFPFA 92
H+RGVRKRPWGRYAAEIRDPAKKSRVWLG E+RGAKAKTNFP+
Sbjct: 37 HFRGVRKRPWGRYAAEIRDPAKKSRVWLGTFDTAEEAARAYDAAAREYRGAKAKTNFPYP 96
Query: 93 SQS-MVGCGGSPSSNSTVDTGGGGVQTPMRAMPLPPTLDLDLFHRXXXXXXXXXXXXRFP 151
+ + G S++STV++ G VQ PM+AMP+PP+L+LDLFHR RFP
Sbjct: 97 NGAPAAGVNSGSSNSSTVESFGSDVQAPMKAMPIPPSLELDLFHRAAAAAAAGAGGMRFP 156
Query: 152 FRGYPVARPATHPYFFYEQXXXXXXXXXGYRMMKLAP-PVTXXXXXXXXXXXXXXXXXXX 210
F GYPV +HPY+F+ Q G RM+K+AP PVT
Sbjct: 157 FEGYPV----SHPYYFFGQ-AAAAAAASGCRMLKIAPAPVTVAALAQSDSDSSSIVDLAP 211
Query: 211 XXXXXTANKAAAFDLDLNRPPPVE 234
A KA AFDLDLN PPP+E
Sbjct: 212 SPPAALAKKAIAFDLDLNCPPPME 235
>Os02g0189600 Similar to Ethylene response factor 2 (Ethylene response factor
3)
Length = 199
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 39/60 (65%)
Query: 33 HYRGVRKRPWGRYAAEIRDPAKKSRVWLGXXXXXXXXXXXXXXXXXEFRGAKAKTNFPFA 92
+RGVRKRPWGRYAAEIRDPAKK+RVWLG RGAKAKTNFP +
Sbjct: 15 RFRGVRKRPWGRYAAEIRDPAKKARVWLGTYDSAEDAARAYDAAARALRGAKAKTNFPLS 74
>Os04g0610400 Similar to AP2 domain containing protein RAP2.6 (Fragment)
Length = 222
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 38/58 (65%)
Query: 32 PHYRGVRKRPWGRYAAEIRDPAKKSRVWLGXXXXXXXXXXXXXXXXXEFRGAKAKTNF 89
P +RGVRKRPWGRYAAEIRDPA+K+RVWLG FRG KAKTNF
Sbjct: 24 PRFRGVRKRPWGRYAAEIRDPARKARVWLGTFDTAEAAARAYDSAALHFRGPKAKTNF 81
>Os04g0669200 Similar to Ethylene response factor 2 (Ethylene response factor
3)
Length = 190
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 38/63 (60%)
Query: 32 PHYRGVRKRPWGRYAAEIRDPAKKSRVWLGXXXXXXXXXXXXXXXXXEFRGAKAKTNFPF 91
P YRGVRKRPWGR+AAEIRDPAK++RVWLG RG A+TNFP
Sbjct: 13 PRYRGVRKRPWGRFAAEIRDPAKRARVWLGTYDSAEAAARAYDVAARNLRGPLARTNFPL 72
Query: 92 ASQ 94
S
Sbjct: 73 VSS 75
>Os05g0497200 Similar to Ethylene-responsive transcription factor 11
(Ethylene-responsive element binding factor 11)
(EREBP-11) (AtERF11)
Length = 189
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 36/57 (63%)
Query: 33 HYRGVRKRPWGRYAAEIRDPAKKSRVWLGXXXXXXXXXXXXXXXXXEFRGAKAKTNF 89
HYRGVRKRPWGRYAAEIRDP KK+RVWLG RG KA+TNF
Sbjct: 22 HYRGVRKRPWGRYAAEIRDPWKKTRVWLGTYDTPVEAALAYDRAAVALRGVKARTNF 78
>Os04g0398000 Pathogenesis-related transcriptional factor and ERF domain
containing protein
Length = 268
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 38/68 (55%)
Query: 33 HYRGVRKRPWGRYAAEIRDPAKKSRVWLGXXXXXXXXXXXXXXXXXEFRGAKAKTNFPFA 92
HYRGVR+RPWG++AAEIRDP K +RVWLG F+G KAK NFP
Sbjct: 66 HYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAAIAYDEAALRFKGTKAKLNFPER 125
Query: 93 SQSMVGCG 100
Q G
Sbjct: 126 VQGRTDLG 133
>Os05g0361700 Similar to EREBP-2 protein (Fragment)
Length = 198
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 36/57 (63%)
Query: 34 YRGVRKRPWGRYAAEIRDPAKKSRVWLGXXXXXXXXXXXXXXXXXEFRGAKAKTNFP 90
YRG+R+RPWGR+AAEIRDP K +RVWLG + RGAKAK NFP
Sbjct: 54 YRGIRRRPWGRWAAEIRDPRKGARVWLGTYATAEEAARAYDVAARDIRGAKAKLNFP 110
>Os09g0434500 Similar to Ethylene response factor 2
Length = 396
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 35/58 (60%)
Query: 33 HYRGVRKRPWGRYAAEIRDPAKKSRVWLGXXXXXXXXXXXXXXXXXEFRGAKAKTNFP 90
YRG+R+RPWG++AAEIRDP+K RVWLG + RG KAK NFP
Sbjct: 135 QYRGIRQRPWGKWAAEIRDPSKGVRVWLGTYNTAEEAARAYDAEARKIRGKKAKVNFP 192
>Os03g0183000 Similar to AP2 domain containing protein RAP2.6 (Fragment)
Length = 334
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 36/58 (62%)
Query: 33 HYRGVRKRPWGRYAAEIRDPAKKSRVWLGXXXXXXXXXXXXXXXXXEFRGAKAKTNFP 90
H+RG+R+RPWG++AAEIRDP K +RVWLG RG+KAK NFP
Sbjct: 110 HFRGIRQRPWGKWAAEIRDPHKGTRVWLGTFNTPEEAARAYDVEARRLRGSKAKVNFP 167
>Os04g0399800 Similar to Ethylene-responsive transcription factor 12
(Ethylene-responsive element binding factor 12)
(EREBP-12) (AtERF12)
Length = 292
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 34/58 (58%)
Query: 34 YRGVRKRPWGRYAAEIRDPAKKSRVWLGXXXXXXXXXXXXXXXXXEFRGAKAKTNFPF 91
Y GVR+RPWGRYAAEIRDPA K R WLG RGA+A+TNF +
Sbjct: 52 YLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAEEAAVAYDRAARSLRGARARTNFAY 109
>Os09g0457900 Similar to AP2 domain containing protein RAP2.6 (Fragment)
Length = 274
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 35/59 (59%)
Query: 34 YRGVRKRPWGRYAAEIRDPAKKSRVWLGXXXXXXXXXXXXXXXXXEFRGAKAKTNFPFA 92
YRGVR RPWG++AAEIRDP + R WLG EFRGA+AK NFP +
Sbjct: 130 YRGVRHRPWGKWAAEIRDPRRAVRKWLGTFDTAEEAARAYDRAALEFRGARAKLNFPCS 188
>Os02g0594300 Similar to Enhancer of shoot regeneration ESR1
Length = 345
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 34/58 (58%)
Query: 34 YRGVRKRPWGRYAAEIRDPAKKSRVWLGXXXXXXXXXXXXXXXXXEFRGAKAKTNFPF 91
YRGVR+RPWGR+AAEIRDPA K R WLG RG +A+TNFP
Sbjct: 59 YRGVRRRPWGRFAAEIRDPASKERRWLGTFDTAEQAACAYDVAARAMRGTRARTNFPV 116
>Os12g0168100 Similar to AP2 domain containing protein RAP2.6 (Fragment)
Length = 341
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 36/57 (63%)
Query: 34 YRGVRKRPWGRYAAEIRDPAKKSRVWLGXXXXXXXXXXXXXXXXXEFRGAKAKTNFP 90
YRGVR+RPWG++AAEIRDP K +RVWLG FRG++AK NFP
Sbjct: 156 YRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEDAARAYDGAALRFRGSRAKLNFP 212
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,914,102
Number of extensions: 224145
Number of successful extensions: 969
Number of sequences better than 1.0e-10: 27
Number of HSP's gapped: 968
Number of HSP's successfully gapped: 27
Length of query: 235
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 137
Effective length of database: 11,918,829
Effective search space: 1632879573
Effective search space used: 1632879573
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)