FiT-DB / Search/ Help/ Sample detail

Os04g0669200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ethylene response factor 2 (Ethylene response factor 3).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.5 (0.0175) R2 : 0.716
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.56 (0.0459) R2dC : 0.718 R2C : 0.715
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0231 (0.0369) R2dN8 : 0.000317 R2N8 : -0.00221
σ : 0.33
deviance : 49.92
__
_____
C
peak time of C : 6.02
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
38.34 0.291 13.5 0.566 1.57 -0.739 -0.208 1.55 0.105 5.95 50.31 8 -- --
39.21 0.294 13.5 0.564 1.57 -0.438 -0.198 -- 0.0978 5.97 50.31 8 -- --
38.29 0.288 13.5 0.569 1.57 -0.733 -- 1.52 0.107 5.95 50.37 5 -- --
39.28 0.292 13.5 0.571 1.57 -0.398 -- -- 0.103 5.95 51.24 5 -- --
164.52 0.601 13.5 0.63 -- -0.141 -- 0.808 0.128 -- 50.37 5 -- --
41.18 0.301 13.5 0.573 1.55 -- -0.25 -- 0.0857 6.03 -- -- -- --
41.33 0.301 13.5 0.571 1.55 -- -- -- 0.0867 6.04 -- -- -- --
87.99 0.437 13.5 0.42 -- 1.16 -- -- 0.117 -- 75 469 -- --
47.5 0.321 13.5 -- 1.58 -0.484 -- -- 0.0406 5.96 51 4 -- --
165.32 0.601 13.5 0.615 -- -- -- -- 0.122 -- -- -- -- --
49.92 0.33 13.5 -- 1.56 -- -- -- 0.0231 6.02 -- -- -- --
97.4 0.46 13.5 -- -- 1.2 -- -- 0.11 -- 74.75 472 -- --
175.31 0.618 13.5 -- -- -- -- -- 0.0534 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 34.71 temperature 20.0 720 > th dose independent rect. 5 2
2 35.10 wind 9.0 720 < th dose independent rect. 5 19
6 35.47 precipitation 0.1 720 < th dose independent rect. 5 19
7 35.47 precipitation 0.1 720 < th dose dependent rect. 5 19
8 35.49 temperature 15.0 720 > th dose dependent rect. 5 2
9 35.52 wind 9.0 720 < th dose independent rect. 12 23
11 35.61 precipitation 0.1 720 < th dose independent rect. 12 21
12 35.61 precipitation 0.1 720 < th dose dependent rect. 12 21
13 35.66 temperature 10.0 720 > th dose dependent rect. 4 5
15 35.70 atmosphere 1000.0 30 > th dose dependent rect. 11 12
18 35.73 wind 9.0 720 < th dose independent rect. 12 21
23 35.78 radiation 1.0 720 < th dose dependent rect. 24 6
27 35.82 wind 9.0 720 < th dose independent rect. 12 5
28 35.84 radiation 10.0 10 < th dose independent rect. 8 10
31 35.84 radiation 20.0 10 < th dose dependent rect. 7 11
36 35.88 precipitation 0.1 720 < th dose independent rect. 13 11
37 35.88 precipitation 0.1 720 < th dose dependent rect. 13 11
38 35.91 wind 9.0 720 < th dose independent rect. 12 13
40 35.92 precipitation 0.1 720 < th dose independent rect. 12 13
42 35.92 precipitation 0.1 720 < th dose dependent rect. 12 13
45 35.96 temperature 10.0 720 > th dose dependent rect. 21 11
47 36.00 radiation 1.0 720 < th dose dependent rect. 24 9
48 36.02 wind 9.0 720 < th dose independent rect. 13 11
49 36.02 wind 9.0 720 < th dose independent rect. 3 15
58 36.10 precipitation 0.1 720 < th dose independent rect. 12 23
60 36.10 precipitation 0.1 720 < th dose dependent rect. 12 23
62 36.13 atmosphere 995.0 720 > th dose dependent rect. 11 1
75 36.21 temperature 30.0 270 < th dose dependent rect. 8 3
83 36.26 wind 9.0 720 < th dose independent rect. 21 20
86 36.27 radiation 20.0 10 < th dose independent rect. 23 19
90 36.28 precipitation 0.1 720 < th dose independent rect. 19 14
92 36.28 precipitation 0.1 720 < th dose dependent rect. 19 14
93 36.29 wind 9.0 720 < th dose independent rect. 19 23
106 36.37 temperature 30.0 720 < th dose dependent rect. 1 2
108 36.38 temperature 30.0 720 < th dose dependent rect. 24 4
111 36.40 wind 7.0 270 < th dose independent rect. 21 11
135 36.48 wind 9.0 720 < th dose independent rect. 6 9
137 36.49 precipitation 0.1 720 < th dose independent rect. 12 5
139 36.49 precipitation 0.1 720 < th dose dependent rect. 12 5
148 36.53 radiation 30.0 270 < th dose independent rect. 21 11
162 36.57 humidity 50.0 10 > th dose independent rect. 13 5
167 36.58 temperature 10.0 270 > th dose dependent rect. 4 13
169 36.58 wind 1.0 10 > th dose dependent rect. 18 19
170 36.59 atmosphere 995.0 720 > th dose independent rect. 17 19
173 36.60 temperature 20.0 720 > th dose independent rect. 22 10
175 36.60 precipitation 0.1 270 < th dose independent rect. 21 11
178 36.60 precipitation 0.1 270 < th dose dependent rect. 21 11
187 36.63 atmosphere 995.0 90 > th dose independent rect. 12 23
195 36.65 humidity 50.0 10 > th dose independent rect. 12 23
212 36.70 radiation 10.0 10 < th dose independent rect. 13 5
236 36.75 temperature 10.0 720 > th dose dependent rect. 23 1
237 36.75 atmosphere 995.0 30 > th dose dependent rect. 18 19
238 36.75 radiation 30.0 10 < th dose dependent rect. 23 19
270 36.83 wind 7.0 720 < th dose independent rect. 21 3
275 36.84 radiation 1.0 720 < th dose independent rect. 24 6
277 36.84 temperature 15.0 270 > th dose independent rect. 4 13
279 36.84 precipitation 0.1 90 < th dose independent rect. 12 23
283 36.84 precipitation 0.1 90 < th dose dependent rect. 12 23
284 36.85 atmosphere 995.0 90 > th dose dependent rect. 11 1
287 36.85 temperature 10.0 30 > th dose dependent rect. 5 13
295 36.87 temperature 10.0 270 > th dose independent rect. 21 11
296 36.87 temperature 30.0 270 < th dose independent rect. 21 11
297 36.87 humidity 50.0 270 > th dose independent rect. 21 11
299 36.87 atmosphere 995.0 270 > th dose independent rect. 21 11
300 36.87 temperature 10.0 270 > th dose independent rect. 8 13
303 36.88 humidity 50.0 10 > th dose independent rect. 6 12
311 36.90 atmosphere 1000.0 30 > th dose dependent rect. 18 5
324 36.93 precipitation 0.1 720 < th dose independent rect. 19 22
327 36.93 precipitation 0.1 720 < th dose dependent rect. 19 22
328 36.94 precipitation 0.1 720 < th dose independent rect. 21 3
330 36.94 precipitation 0.1 720 < th dose dependent rect. 21 3
342 36.96 wind 9.0 720 < th dose independent rect. 24 5
343 36.96 temperature 10.0 720 > th dose independent rect. 24 5
344 36.96 temperature 30.0 720 < th dose independent rect. 24 5
345 36.96 humidity 50.0 720 > th dose independent rect. 24 5
348 36.96 atmosphere 995.0 30 > th dose independent rect. 13 5
349 36.96 atmosphere 995.0 720 > th dose independent rect. 24 5
356 36.96 temperature 10.0 720 > th dose independent rect. 5 19
357 36.96 precipitation 0.1 720 < th dose independent rect. 21 20
361 36.96 precipitation 0.1 720 < th dose dependent rect. 21 20
362 36.97 temperature 10.0 720 > th dose independent rect. 12 5
363 36.97 atmosphere 1015.0 720 < th dose independent rect. 12 5
365 36.97 temperature 10.0 720 > th dose independent rect. 17 19
367 36.98 wind 7.0 90 < th dose independent rect. 12 23
372 36.99 atmosphere 995.0 10 > th dose independent rect. 12 23
394 37.02 radiation 40.0 720 < th dose independent rect. 19 14
403 37.03 wind 1.0 720 > th dose dependent rect. 11 1
418 37.06 radiation 1.0 720 < th dose dependent rect. 24 21
430 37.08 temperature 10.0 720 > th dose independent rect. 9 3
431 37.08 atmosphere 995.0 720 > th dose independent rect. 9 3
432 37.08 atmosphere 1015.0 720 < th dose independent rect. 9 3
434 37.08 temperature 10.0 720 > th dose independent rect. 12 21
450 37.10 temperature 10.0 720 > th dose independent rect. 21 3
451 37.10 temperature 30.0 720 < th dose independent rect. 21 3
452 37.10 humidity 50.0 720 > th dose independent rect. 21 3
455 37.10 atmosphere 995.0 720 > th dose independent rect. 21 3
456 37.10 radiation 1.0 720 < th dose independent rect. 21 3
461 37.10 atmosphere 1010.0 30 < th dose independent rect. 6 12
463 37.10 temperature 10.0 720 > th dose independent rect. 24 21
464 37.10 radiation 1.0 720 < th dose dependent rect. 21 3
473 37.11 wind 1.0 720 > th dose independent rect. 9 3
487 37.13 temperature 30.0 90 < th dose independent rect. 11 1
489 37.13 humidity 50.0 10 > th dose dependent rect. 13 5
491 37.13 radiation 20.0 720 < th dose dependent rect. 17 10
494 37.14 precipitation 0.1 720 < th dose independent rect. 9 3
495 37.14 atmosphere 995.0 270 > th dose independent rect. 4 13
497 37.14 precipitation 0.1 720 < th dose dependent rect. 9 3
501 37.15 temperature 30.0 10 < th dose independent rect. 14 4
503 37.15 atmosphere 1015.0 720 < th dose independent rect. 12 21
506 37.16 precipitation 0.1 720 < th dose independent rect. 3 14
508 37.16 atmosphere 1005.0 270 > th dose dependent rect. 18 1
509 37.16 temperature 20.0 720 < th dose dependent rect. 1 2
511 37.16 wind 9.0 10 < th dose dependent rect. 23 12
513 37.16 precipitation 0.1 720 < th dose dependent rect. 3 14
514 37.17 temperature 10.0 720 > th dose independent rect. 13 11
515 37.17 temperature 10.0 720 > th dose independent rect. 24 13
516 37.17 atmosphere 995.0 720 > th dose independent rect. 24 13
524 37.18 radiation 40.0 30 < th dose dependent rect. 13 5
527 37.19 radiation 30.0 10 < th dose independent rect. 23 12
533 37.20 radiation 1.0 720 > th dose independent rect. 11 1
535 37.20 atmosphere 1015.0 270 < th dose independent rect. 8 13
537 37.20 humidity 50.0 90 > th dose dependent rect. 13 4
541 37.21 atmosphere 1005.0 270 > th dose independent rect. 18 1
543 37.21 precipitation 0.1 10 < th dose independent rect. 23 12
550 37.21 precipitation 0.1 10 < th dose dependent rect. 23 12
554 37.22 radiation 40.0 720 < th dose independent rect. 4 5
555 37.22 temperature 10.0 720 > th dose independent rect. 1 11
556 37.22 atmosphere 995.0 720 > th dose independent rect. 1 11
558 37.22 temperature 10.0 720 > th dose independent rect. 12 13
559 37.22 atmosphere 995.0 720 > th dose dependent rect. 18 1
561 37.22 radiation 20.0 10 < th dose dependent rect. 12 6
571 37.23 radiation 1.0 720 < th dose dependent rect. 24 19
572 37.24 wind 1.0 720 > th dose independent rect. 11 1
573 37.24 atmosphere 1000.0 90 > th dose independent rect. 11 1
574 37.24 atmosphere 1005.0 270 > th dose independent rect. 17 3
581 37.25 humidity 60.0 90 > th dose independent rect. 15 2
591 37.26 radiation 20.0 90 < th dose independent rect. 13 4
600 37.27 temperature 25.0 270 < th dose independent rect. 8 3
613 37.28 temperature 30.0 10 < th dose independent rect. 11 2
619 37.28 temperature 10.0 10 > th dose dependent rect. 23 12
631 37.29 atmosphere 995.0 30 > th dose dependent rect. 18 11
633 37.29 temperature 10.0 720 > th dose dependent rect. 21 19
637 37.30 atmosphere 1015.0 30 < th dose independent rect. 23 12
648 37.31 atmosphere 1005.0 720 > th dose independent rect. 11 1
649 37.31 atmosphere 1015.0 720 < th dose independent rect. 23 1
653 37.31 radiation 1.0 30 > th dose independent rect. 12 23
667 37.32 humidity 50.0 720 > th dose independent rect. 17 19
674 37.33 atmosphere 1015.0 270 < th dose independent rect. 24 12
681 37.34 precipitation 0.1 720 < th dose independent rect. 23 1
688 37.34 precipitation 0.1 720 < th dose dependent rect. 23 1
705 37.36 wind 7.0 720 < th dose independent rect. 23 1
712 37.36 wind 7.0 30 < th dose independent rect. 23 12
721 37.37 precipitation 0.1 720 < th dose independent rect. 19 6
728 37.37 temperature 15.0 720 > th dose dependent sin 8 NA
733 37.37 precipitation 0.1 720 < th dose dependent rect. 19 6
737 37.38 temperature 10.0 720 > th dose independent rect. 11 1
740 37.38 atmosphere 995.0 720 > th dose independent rect. 11 1
741 37.38 atmosphere 1015.0 720 < th dose independent rect. 11 1
742 37.38 precipitation 0.1 720 < th dose independent rect. 11 1
744 37.38 temperature 10.0 30 > th dose independent rect. 11 12
746 37.38 temperature 10.0 30 > th dose independent rect. 23 12
747 37.38 humidity 50.0 30 > th dose independent rect. 23 12
748 37.38 atmosphere 995.0 30 > th dose independent rect. 23 12
749 37.38 atmosphere 1015.0 30 < th dose independent rect. 11 12
750 37.38 temperature 10.0 720 > th dose independent rect. 12 23
751 37.38 wind 7.0 90 > th dose dependent sin 9 NA
752 37.38 precipitation 0.1 720 < th dose dependent rect. 11 1
759 37.39 temperature 10.0 720 > th dose independent rect. 23 1
761 37.39 temperature 30.0 720 < th dose independent rect. 23 1
762 37.39 humidity 50.0 720 > th dose independent rect. 23 1
765 37.39 atmosphere 995.0 720 > th dose independent rect. 23 1
766 37.39 radiation 1.0 720 < th dose independent rect. 23 1
785 37.39 atmosphere 1000.0 30 > th dose independent rect. 11 12
790 37.39 wind 9.0 90 > th dose independent rect. 19 16
791 37.39 temperature 10.0 720 > th dose independent rect. 24 23
795 37.39 radiation 1.0 720 < th dose dependent rect. 23 1
843 37.41 radiation 40.0 720 < th dose dependent rect. 16 5
846 37.42 radiation 40.0 30 < th dose independent rect. 13 5
862 37.43 temperature 20.0 720 > th dose independent sin 7 NA
864 37.43 atmosphere 1015.0 720 < th dose independent rect. 21 3
865 37.43 radiation 1.0 720 > th dose independent rect. 9 3
872 37.43 wind 7.0 90 > th dose dependent rect. 18 17
881 37.44 temperature 30.0 720 < th dose dependent rect. 24 12
887 37.45 atmosphere 995.0 270 > th dose independent rect. 17 11
900 37.46 radiation 1.0 720 < th dose independent rect. 18 1
904 37.46 radiation 1.0 720 < th dose independent rect. 18 10
918 37.47 radiation 1.0 720 < th dose dependent rect. 18 1
928 37.48 radiation 20.0 90 < th dose independent rect. 15 2
933 37.48 humidity 50.0 10 > th dose independent rect. 23 19
942 37.48 temperature 30.0 270 < th dose dependent rect. 7 13
946 37.49 wind 1.0 30 > th dose independent rect. 13 5
974 37.51 radiation 1.0 90 > th dose independent rect. 11 1
975 37.51 atmosphere 1005.0 30 > th dose independent rect. 18 5
986 37.52 atmosphere 1000.0 30 > th dose independent rect. 18 19
994 37.53 wind 1.0 90 > th dose independent rect. 11 1
996 37.53 wind 1.0 90 > th dose dependent rect. 11 1