Os04g0610400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to AP2 domain containing protein RAP2.6 (Fragment).
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Os04g0610400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to AP2 domain containing protein RAP2.6 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 185.97 | 0.641 | 12.5 | 0.807 | 1.16 | -1.04 | 0.461 | 2.01 | -0.124 | 5.73 | 25.6 | 5962 | -- | -- |
| 187.72 | 0.638 | 12.6 | 0.41 | 1.21 | -0.925 | 0.521 | -- | -0.0384 | 5.77 | 23.1 | 8983 | -- | -- |
| 186.45 | 0.636 | 12.5 | 0.823 | 1.16 | -1.04 | -- | 2.05 | -0.124 | 5.71 | 25.7 | 5958 | -- | -- |
| 185.33 | 0.634 | 12.6 | 0.959 | 1.13 | -1.23 | -- | -- | -0.0308 | 5.89 | 21.5 | 21544 | -- | -- |
| 240.24 | 0.726 | 12.7 | -0.0924 | -- | -0.655 | -- | -0.347 | -0.309 | -- | 25.7 | 5958 | -- | -- |
| 215.94 | 0.689 | 12.7 | -0.194 | 1.16 | -- | 0.455 | -- | -0.501 | 5.84 | -- | -- | -- | -- |
| 216.45 | 0.689 | 12.7 | -0.191 | 1.16 | -- | -- | -- | -0.503 | 5.81 | -- | -- | -- | -- |
| 240.74 | 0.726 | 12.6 | -0.0133 | -- | -0.664 | -- | -- | -0.287 | -- | 25.7 | 5958 | -- | -- |
| 190.4 | 0.643 | 12.6 | -- | 1.16 | -0.82 | -- | -- | -0.174 | 5.78 | 23.2 | 8125 | -- | -- |
| 286.61 | 0.791 | 12.7 | -0.155 | -- | -- | -- | -- | -0.476 | -- | -- | -- | -- | -- |
| 217.41 | 0.69 | 12.7 | -- | 1.16 | -- | -- | -- | -0.482 | 5.82 | -- | -- | -- | -- |
| 240.74 | 0.725 | 12.6 | -- | -- | -0.665 | -- | -- | -0.285 | -- | 25.7 | 5958 | -- | -- |
| 287.24 | 0.791 | 12.7 | -- | -- | -- | -- | -- | -0.458 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 183.31 | temperature | 30 | 90 | < th | dose dependent | rect. | 18 | 19 |
| 8 | 184.61 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 9 | 184.67 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 12 | 185.26 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 17 | 185.39 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 45 | 185.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 65 | 186.18 | temperature | 25 | 90 | < th | dose independent | rect. | 18 | 18 |
| 71 | 186.20 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 87 | 186.32 | temperature | 25 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 97 | 186.38 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 112 | 186.45 | temperature | 25 | 14400 | < th | dose independent | rect. | 9 | 11 |
| 115 | 186.46 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 120 | 186.47 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 4 |
| 135 | 186.51 | temperature | 25 | 14400 | > th | dose independent | rect. | 9 | 11 |
| 149 | 186.58 | temperature | 20 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 150 | 186.58 | temperature | 20 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 188 | 186.68 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 14 |
| 234 | 186.79 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 269 | 186.86 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 3 |
| 278 | 186.89 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 2 |
| 302 | 186.94 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 319 | 186.97 | temperature | 20 | 14400 | > th | dose independent | sin | 11 | NA |
| 402 | 187.13 | temperature | 25 | 14400 | < th | dose independent | sin | 23 | NA |
| 411 | 187.15 | temperature | 25 | 14400 | > th | dose independent | sin | 23 | NA |
| 412 | 187.15 | temperature | 20 | 14400 | < th | dose independent | sin | 11 | NA |
| 414 | 187.15 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 2 |
| 423 | 187.16 | wind | 1 | 43200 | < th | dose dependent | rect. | 16 | 3 |
| 456 | 187.23 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 557 | 187.42 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 676 | 187.60 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 677 | 187.60 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 685 | 187.61 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 2 |
| 718 | 187.66 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 852 | 187.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 20 |
| 982 | 188.08 | temperature | 20 | 14400 | > th | dose dependent | rect. | 22 | 1 |