Os02g0189600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ethylene response factor 2 (Ethylene response factor 3).
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Os02g0189600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ethylene response factor 2 (Ethylene response factor 3).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 149.23 | 0.574 | 7.67 | 0.82 | 1.04 | 0.112 | 0.498 | 7.18 | 0.0177 | 9.3 | 28.7 | 4974 | -- | -- |
| 159.28 | 0.588 | 7.81 | -0.572 | 1.24 | 1.2 | 1.3 | -- | -0.0141 | 8.99 | 28.46 | 2098 | -- | -- |
| 150.11 | 0.571 | 7.67 | 0.834 | 1.03 | 0.108 | -- | 7.16 | 0.017 | 9.26 | 28.7 | 4962 | -- | -- |
| 156.24 | 0.582 | 7.83 | -0.49 | 1.16 | 1.07 | -- | -- | -0.15 | 9.04 | 28.42 | 2201 | -- | -- |
| 210.92 | 0.676 | 7.71 | 0.865 | -- | 0.025 | -- | 7.33 | 0.0117 | -- | 28.57 | 4433 | -- | -- |
| 188.2 | 0.643 | 7.86 | -0.309 | 0.977 | -- | 0.335 | -- | -0.204 | 9.1 | -- | -- | -- | -- |
| 188.59 | 0.643 | 7.86 | -0.297 | 0.977 | -- | -- | -- | -0.203 | 9.07 | -- | -- | -- | -- |
| 209.77 | 0.675 | 7.87 | -0.587 | -- | 0.816 | -- | -- | -0.066 | -- | 29.2 | 5817 | -- | -- |
| 161.84 | 0.593 | 7.83 | -- | 1.04 | 0.858 | -- | -- | -0.0651 | 9.15 | 28.2 | 4848 | -- | -- |
| 243.55 | 0.729 | 7.89 | -0.3 | -- | -- | -- | -- | -0.198 | -- | -- | -- | -- | -- |
| 190.92 | 0.646 | 7.85 | -- | 0.976 | -- | -- | -- | -0.17 | 9.1 | -- | -- | -- | -- |
| 217.03 | 0.686 | 7.86 | -- | -- | 0.759 | -- | -- | -0.0732 | -- | 29.2 | 5840 | -- | -- |
| 245.92 | 0.732 | 7.88 | -- | -- | -- | -- | -- | -0.165 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 149.51 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 3 | 149.74 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 4 | 149.75 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 4 | 10 |
| 7 | 149.77 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 20 | 18 |
| 29 | 149.83 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 30 | 149.86 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 35 | 149.95 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 3 | 4 |
| 40 | 150.65 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 24 | 11 |
| 44 | 150.91 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 1 | 8 |
| 48 | 151.00 | temperature | 30.0 | 1440 | < th | dose independent | sin | 7 | NA |
| 67 | 151.37 | temperature | 30.0 | 1440 | > th | dose independent | sin | 6 | NA |
| 123 | 151.54 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 4 |
| 166 | 151.76 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 170 | 151.79 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 2 | 7 |
| 211 | 151.97 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 13 | 2 |
| 346 | 152.35 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 10 | 21 |
| 347 | 152.36 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 10 | 11 |
| 350 | 152.36 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 10 | 19 |
| 353 | 152.36 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 9 | NA |
| 403 | 152.45 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 4 |
| 493 | 152.56 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 497 | 152.56 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 4 | 17 |
| 513 | 152.57 | temperature | 30.0 | 4320 | < th | dose independent | no | NA | NA |
| 594 | 152.62 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 628 | 152.69 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 656 | 152.72 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 3 | 6 |
| 770 | 152.86 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 15 |
| 773 | 152.86 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 15 |
| 774 | 152.87 | temperature | 30.0 | 4320 | > th | dose independent | no | NA | NA |
| 775 | 152.87 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 1 | NA |
| 882 | 152.87 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 1 | NA |
| 886 | 152.88 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 1 | NA |
| 933 | 152.93 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 15 |