Os02g0158000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ethylene response factor 2 (Ethylene response factor 3).
FiT-DB / Search/ Help/ Sample detail
|
Os02g0158000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Ethylene response factor 2 (Ethylene response factor 3).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 202.14 | 0.668 | 8.71 | -1.93 | 4.13 | 2.1 | 1.45 | -0.0624 | -0.866 | 7.75 | 31.11 | 40 | -- | -- |
| 202.02 | 0.662 | 8.71 | -1.93 | 4.13 | 2.1 | 1.4 | -- | -0.869 | 7.75 | 31.2 | 46 | -- | -- |
| 208.08 | 0.672 | 8.72 | -1.91 | 4.14 | 2.09 | -- | -0.139 | -0.871 | 7.72 | 31.27 | 41 | -- | -- |
| 207.98 | 0.672 | 8.72 | -1.91 | 4.13 | 2.12 | -- | -- | -0.888 | 7.73 | 31.55 | 47 | -- | -- |
| 800.19 | 1.32 | 8.66 | -0.561 | -- | 5.54 | -- | -3.31 | -0.237 | -- | 34.99 | 483 | -- | -- |
| 257.33 | 0.752 | 8.8 | -2.42 | 4.33 | -- | 1.49 | -- | -1.24 | 7.17 | -- | -- | -- | -- |
| 263.2 | 0.76 | 8.8 | -2.39 | 4.34 | -- | -- | -- | -1.24 | 7.14 | -- | -- | -- | -- |
| 787.07 | 1.31 | 8.72 | -1.09 | -- | 5.54 | -- | -- | -0.369 | -- | 42.73 | 488 | -- | -- |
| 293.75 | 0.798 | 8.65 | -- | 4.04 | 2.84 | -- | -- | -0.556 | 7.95 | 30.96 | 47 | -- | -- |
| 1255.94 | 1.66 | 8.89 | -2.31 | -- | -- | -- | -- | -1.16 | -- | -- | -- | -- | -- |
| 413.56 | 0.951 | 8.74 | -- | 4.31 | -- | -- | -- | -0.973 | 7.18 | -- | -- | -- | -- |
| 815.65 | 1.33 | 8.68 | -- | -- | 5.92 | -- | -- | -0.202 | -- | 51.97 | 493 | -- | -- |
| 1396.3 | 1.74 | 8.84 | -- | -- | -- | -- | -- | -0.907 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 196.73 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 13 |
| 2 | 197.59 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 4 | 197.87 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 20 |
| 11 | 198.90 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 22 |
| 15 | 199.08 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 39 | 200.40 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 40 | 200.55 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 20 |
| 42 | 200.69 | temperature | 30 | 10 | < th | dose dependent | sin | 16 | NA |
| 46 | 200.75 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 60 | 201.06 | temperature | 10 | 10 | > th | dose dependent | sin | 15 | NA |
| 67 | 201.19 | temperature | 20 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 74 | 201.38 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 78 | 201.44 | temperature | 10 | 30 | > th | dose dependent | sin | 17 | NA |
| 105 | 202.02 | temperature | 30 | 10 | < th | dose dependent | rect. | 8 | 23 |
| 116 | 202.09 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 120 | 202.16 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 148 | 202.44 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 211 | 203.14 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 212 | 203.15 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 227 | 203.29 | temperature | 30 | 90 | < th | dose dependent | rect. | 10 | 13 |
| 235 | 203.42 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 288 | 204.08 | temperature | 30 | 90 | < th | dose dependent | rect. | 16 | 13 |
| 318 | 204.41 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 333 | 204.54 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 13 |
| 335 | 204.60 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 345 | 204.66 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 13 |
| 398 | 205.23 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 401 | 205.31 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 448 | 205.74 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 3 |
| 457 | 205.82 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 17 |
| 469 | 205.92 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 18 |
| 478 | 206.00 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 12 |
| 480 | 206.02 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 490 | 206.07 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 597 | 206.65 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 642 | 206.97 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 16 |
| 690 | 207.27 | temperature | 25 | 90 | < th | dose independent | rect. | 10 | 13 |
| 694 | 207.28 | temperature | 10 | 270 | > th | dose dependent | rect. | 21 | 11 |
| 727 | 207.47 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 729 | 207.50 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 733 | 207.52 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 738 | 207.56 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 753 | 207.68 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 796 | 207.95 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 797 | 207.96 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 812 | 208.06 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 813 | 208.06 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 847 | 208.26 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 7 |
| 854 | 208.30 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 857 | 208.31 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 877 | 208.45 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 958 | 208.87 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |