BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0552700 Os10g0552700|AK063090
         (124 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0552700  Similar to Tumor-related protein (Fragment)         168   9e-43
Os10g0552800  Similar to Tfm5 protein                             128   1e-30
Os10g0552600  Similar to Tfm5 protein                             120   2e-28
Os04g0554600  Similar to RCc3 protein                              98   1e-21
Os02g0662000  RCc3 protein                                         98   2e-21
Os04g0554500  Similar to RCc3 protein                              97   2e-21
Os10g0349800                                                       89   5e-19
Os10g0552100  Similar to NT16 polypeptide                          88   1e-18
Os10g0552300  Similar to Root-specific protein (RCc2 protein)      88   1e-18
Os10g0552200  Plant lipid transfer/seed storage/trypsin-alph...    88   2e-18
Os10g0349300  Similar to Root-specific protein (RCc2 protein)      87   4e-18
Os10g0551900  Plant lipid transfer/seed storage/trypsin-alph...    86   7e-18
Os02g0662100  Similar to Tfm5 protein                              85   1e-17
Os03g0103100  Similar to Physical impedance induced protein        85   1e-17
Os10g0349400                                                       84   4e-17
Os03g0801200  Plant lipid transfer/seed storage/trypsin-alph...    82   6e-17
Os10g0554800  Similar to ExtA                                      82   7e-17
Os03g0103200  Similar to Physical impedance induced protein        81   2e-16
Os10g0551800  Root-specific protein (RCc2 protein)                 79   1e-15
Os03g0103300  Plant lipid transfer/seed storage/trypsin-alph...    77   4e-15
Os10g0349900  Similar to NT16 polypeptide                          75   1e-14
Os04g0554800  Similar to RCc3 protein                              72   8e-14
Os06g0104800                                                       68   1e-12
Os04g0612300  Similar to Cell wall-plasma membrane linker pr...    67   4e-12
>Os10g0552700 Similar to Tumor-related protein (Fragment)
          Length = 124

 Score =  168 bits (425), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 88/102 (86%), Positives = 88/102 (86%)

Query: 23  CGTDCPPAPRPRPSTGSCPRDALKLRVCANVLGLVKAKVGAVAPYEPCCSXXXXXXXXXX 82
           CGTDCPPAPRPRPSTGSCPRDALKLRVCANVLGLVKAKVGAVAPYEPCCS          
Sbjct: 23  CGTDCPPAPRPRPSTGSCPRDALKLRVCANVLGLVKAKVGAVAPYEPCCSLLDGLVDLDA 82

Query: 83  XXXXCTAVKANVLGIKLDLPVDLSLILNNCGKICPSDFKCVH 124
               CTAVKANVLGIKLDLPVDLSLILNNCGKICPSDFKCVH
Sbjct: 83  AVCLCTAVKANVLGIKLDLPVDLSLILNNCGKICPSDFKCVH 124
>Os10g0552800 Similar to Tfm5 protein
          Length = 132

 Score =  128 bits (321), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/86 (75%), Positives = 71/86 (82%)

Query: 39  SCPRDALKLRVCANVLGLVKAKVGAVAPYEPCCSXXXXXXXXXXXXXXCTAVKANVLGIK 98
           SCPRDALKL VCANVLGLVKAKVGAV+PYEPCCS              CTA+KANVLGIK
Sbjct: 47  SCPRDALKLHVCANVLGLVKAKVGAVSPYEPCCSLLDGLVDLDAAVCLCTAIKANVLGIK 106

Query: 99  LDLPVDLSLILNNCGKICPSDFKCVH 124
           L+LP+DLSLILNNCGKICPSD++CVH
Sbjct: 107 LNLPIDLSLILNNCGKICPSDYQCVH 132
>Os10g0552600 Similar to Tfm5 protein
          Length = 133

 Score =  120 bits (302), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/84 (71%), Positives = 68/84 (80%)

Query: 39  SCPRDALKLRVCANVLGLVKAKVGAVAPYEPCCSXXXXXXXXXXXXXXCTAVKANVLGIK 98
           SCPRDALKL VCANVLGLVKAK+GAVAPYEPCCS              CTA+KANVLG+ 
Sbjct: 49  SCPRDALKLHVCANVLGLVKAKIGAVAPYEPCCSLLDGLVDLDAAVCLCTAIKANVLGLN 108

Query: 99  LDLPVDLSLILNNCGKICPSDFKC 122
           L++P+DLSLILNNCGKICPSD++C
Sbjct: 109 LNIPIDLSLILNNCGKICPSDYQC 132
>Os04g0554600 Similar to RCc3 protein
          Length = 131

 Score = 98.2 bits (243), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/87 (62%), Positives = 60/87 (68%), Gaps = 1/87 (1%)

Query: 36  STGSCPRDALKLRVCANVLGLVKAKVGAVAPYEPCCSXXXXXXXXXXXXXXCTAVKANVL 95
           + G CPRDALKL VCANVLGL+KAKVG V P EPCC               CTA+K N+L
Sbjct: 45  AFGKCPRDALKLGVCANVLGLIKAKVG-VPPAEPCCPLLEGLVDLEAAVCLCTAIKGNIL 103

Query: 96  GIKLDLPVDLSLILNNCGKICPSDFKC 122
           GI L+LPVDLSLILN CGK  P+ FKC
Sbjct: 104 GINLNLPVDLSLILNYCGKRVPTGFKC 130
>Os02g0662000 RCc3 protein
          Length = 133

 Score = 97.8 bits (242), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 60/87 (68%), Gaps = 1/87 (1%)

Query: 36  STGSCPRDALKLRVCANVLGLVKAKVGAVAPYEPCCSXXXXXXXXXXXXXXCTAVKANVL 95
           + G CPRDALKL VCANVLGL+KAKVG V P EPCC               CTA++ N+L
Sbjct: 48  AFGRCPRDALKLGVCANVLGLIKAKVG-VPPAEPCCPLLEGLVDLEAAVCLCTAIRGNIL 106

Query: 96  GIKLDLPVDLSLILNNCGKICPSDFKC 122
           GI L+LP+DLSLILN CGK  P+ FKC
Sbjct: 107 GINLNLPIDLSLILNYCGKTVPTGFKC 133
>Os04g0554500 Similar to RCc3 protein
          Length = 130

 Score = 97.1 bits (240), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/87 (60%), Positives = 60/87 (68%), Gaps = 1/87 (1%)

Query: 36  STGSCPRDALKLRVCANVLGLVKAKVGAVAPYEPCCSXXXXXXXXXXXXXXCTAVKANVL 95
           + G CPRDALKL VCANVLGL+KAKVG V P EPCC               CTA++ N+L
Sbjct: 45  AFGKCPRDALKLGVCANVLGLIKAKVG-VPPAEPCCPLLEGLVDLEAAVCLCTAIRGNIL 103

Query: 96  GIKLDLPVDLSLILNNCGKICPSDFKC 122
           GI L+LPVDLSLILN CGK  P+ FKC
Sbjct: 104 GINLNLPVDLSLILNYCGKRVPTGFKC 130
>Os10g0349800 
          Length = 130

 Score = 89.4 bits (220), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 59/86 (68%), Gaps = 3/86 (3%)

Query: 38  GSCPRDALKLRVCANVL-GLVKAKVGAVAPYEPCCSXXXXXXXXXXXXXXCTAVKANVLG 96
           G CP DALKLRVCANVL GLV  ++G   P + CCS              CTAVKANVLG
Sbjct: 47  GRCPMDALKLRVCANVLKGLVDVEIGH-GP-DDCCSLLSGIADIDAAVCLCTAVKANVLG 104

Query: 97  IKLDLPVDLSLILNNCGKICPSDFKC 122
           I+++LPVDLSLILN CGK CPSDF C
Sbjct: 105 IRVNLPVDLSLILNKCGKTCPSDFTC 130
>Os10g0552100 Similar to NT16 polypeptide
          Length = 131

 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/97 (59%), Positives = 61/97 (62%), Gaps = 9/97 (9%)

Query: 33  PRPST------GSCPRDALKLRVCANVL-GLVKAKVGAVAPYEPCCSXXXXXXXXXXXXX 85
           P P+T      G CP DALKLRVCANVL GLV  K+GA  P E CCS             
Sbjct: 37  PTPTTPSYDRHGHCPIDALKLRVCANVLNGLVGVKIGA-GPNE-CCSLLQGIADLDAAVC 94

Query: 86  XCTAVKANVLGIKLDLPVDLSLILNNCGKICPSDFKC 122
            CTAVKANVLGI L+LPVDLSLILN C KI PS F C
Sbjct: 95  LCTAVKANVLGINLNLPVDLSLILNKCNKIYPSGFTC 131
>Os10g0552300 Similar to Root-specific protein (RCc2 protein)
          Length = 136

 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 58/86 (67%), Gaps = 3/86 (3%)

Query: 38  GSCPRDALKLRVCANVL-GLVKAKVGAVAPYEPCCSXXXXXXXXXXXXXXCTAVKANVLG 96
           G CP DALKLRVC NVL GLV  K+GA  P + CC               CTAVKANVLG
Sbjct: 53  GRCPIDALKLRVCTNVLNGLVGVKIGA-GP-DDCCPLLSGLADLDAAVCLCTAVKANVLG 110

Query: 97  IKLDLPVDLSLILNNCGKICPSDFKC 122
           +KL+L VDLSLILN CGKICPSDF C
Sbjct: 111 MKLNLAVDLSLILNKCGKICPSDFTC 136
>Os10g0552200 Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor
           domain containing protein
          Length = 131

 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/97 (59%), Positives = 61/97 (62%), Gaps = 9/97 (9%)

Query: 33  PRPST------GSCPRDALKLRVCANVL-GLVKAKVGAVAPYEPCCSXXXXXXXXXXXXX 85
           P P+T      G CP DALKLRVCANVL GLV  K+GA  P E CCS             
Sbjct: 37  PTPTTPSYDRHGHCPIDALKLRVCANVLNGLVGVKIGA-GPNE-CCSLLQGIADLDAAVC 94

Query: 86  XCTAVKANVLGIKLDLPVDLSLILNNCGKICPSDFKC 122
            CTAVKANVLGI L+LPVDLSLILN C KI PS F C
Sbjct: 95  LCTAVKANVLGINLNLPVDLSLILNKCSKIYPSGFTC 131
>Os10g0349300 Similar to Root-specific protein (RCc2 protein)
          Length = 137

 Score = 86.7 bits (213), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/103 (52%), Positives = 62/103 (60%), Gaps = 10/103 (9%)

Query: 28  PPAPRPRPSTGS-------CPRDALKLRVCANVL-GLVKAKVGAVAPYEPCCSXXXXXXX 79
           PP   P PS          CP + LKLRVCANVL GLV AK+G     + CCS       
Sbjct: 37  PPIAVPTPSHHGGHGEHGRCPINTLKLRVCANVLNGLVDAKIGH--GTDDCCSLLSGIAD 94

Query: 80  XXXXXXXCTAVKANVLGIKLDLPVDLSLILNNCGKICPSDFKC 122
                  CTAVKANVLGI+++LPVDLS++LN CGK CPSDF C
Sbjct: 95  LDAAVCLCTAVKANVLGIRVNLPVDLSIMLNKCGKTCPSDFTC 137
>Os10g0551900 Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor
           domain containing protein
          Length = 142

 Score = 85.9 bits (211), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 54/85 (63%), Positives = 59/85 (69%), Gaps = 4/85 (4%)

Query: 40  CPRDALKLRVCANVL-GLVKAKVGAVAPYEPCCSXXXXXXXXXXXXXXCTAVKANVLGI- 97
           CP DALKLRVCANVL GLV  K+GA  P + CC               CTA+KANVLGI 
Sbjct: 60  CPIDALKLRVCANVLNGLVGVKIGA-GP-DDCCPLLSGLADLDAAVCLCTAIKANVLGII 117

Query: 98  KLDLPVDLSLILNNCGKICPSDFKC 122
            L++PVDLSLILNNCGKICPSDF C
Sbjct: 118 NLNIPVDLSLILNNCGKICPSDFTC 142
>Os02g0662100 Similar to Tfm5 protein
          Length = 128

 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 54/83 (65%), Gaps = 1/83 (1%)

Query: 40  CPRDALKLRVCANVLGLVKAKVGAVAPYEPCCSXXXXXXXXXXXXXXCTAVKANVLGIKL 99
           CP++ALK   CA+VLGLV A+VG   PYEPCC               CTA+KANVLGI L
Sbjct: 46  CPKNALKFAACADVLGLVSAEVGQ-PPYEPCCGVLGGLADLEAAVCLCTAIKANVLGITL 104

Query: 100 DLPVDLSLILNNCGKICPSDFKC 122
           D+PV LSL++N CGK  PS F C
Sbjct: 105 DIPVKLSLLVNYCGKNVPSGFIC 127
>Os03g0103100 Similar to Physical impedance induced protein
          Length = 138

 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/85 (55%), Positives = 54/85 (63%), Gaps = 1/85 (1%)

Query: 38  GSCPRDALKLRVCANVLGLVKAKVGAVAPYEPCCSXXXXXXXXXXXXXXCTAVKANVLGI 97
             CP DALKL VCANVL L+K K+G V   E CC               CTA+KAN+LGI
Sbjct: 53  NKCPIDALKLSVCANVLNLLKLKIG-VPESEQCCPLLGGLVDLDAAVCLCTAIKANILGI 111

Query: 98  KLDLPVDLSLILNNCGKICPSDFKC 122
            L++PVDLSL+LN C K CPSDF C
Sbjct: 112 NLNIPVDLSLLLNYCHKTCPSDFTC 136
>Os10g0349400 
          Length = 137

 Score = 83.6 bits (205), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/84 (60%), Positives = 57/84 (67%), Gaps = 3/84 (3%)

Query: 40  CPRDALKLRVCANVLG-LVKAKVGAVAPYEPCCSXXXXXXXXXXXXXXCTAVKANVLGIK 98
           CP +ALKLRVCANVL  LV  K+G   P + CCS              CTAVKANVLGI+
Sbjct: 56  CPINALKLRVCANVLNRLVDVKIGH-GP-DDCCSLLSGIADLDAAVCLCTAVKANVLGIR 113

Query: 99  LDLPVDLSLILNNCGKICPSDFKC 122
           ++LPVDLSLILN CGK CPSDF C
Sbjct: 114 VNLPVDLSLILNKCGKSCPSDFTC 137
>Os03g0801200 Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor
          domain containing protein
          Length = 129

 Score = 82.4 bits (202), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 46/53 (86%), Positives = 46/53 (86%), Gaps = 6/53 (11%)

Query: 26 DCPPAPRPRP----STG--SCPRDALKLRVCANVLGLVKAKVGAVAPYEPCCS 72
          DCPPAPRP P    STG  SCPRDALKLRVCANVLGLVKAKVGAVAPYEPCCS
Sbjct: 7  DCPPAPRPTPASTPSTGLSSCPRDALKLRVCANVLGLVKAKVGAVAPYEPCCS 59
>Os10g0554800 Similar to ExtA
          Length = 167

 Score = 82.4 bits (202), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 53/83 (63%), Gaps = 1/83 (1%)

Query: 40  CPRDALKLRVCANVLGLVKAKVGAVAPYEPCCSXXXXXXXXXXXXXXCTAVKANVLGIKL 99
           CP DALKL VCANVL L+KAK G V   EPCC               CTA+KANVLGI L
Sbjct: 85  CPTDALKLGVCANVLDLIKAKAG-VPATEPCCPLLNGLVDLEAAVCLCTAIKANVLGINL 143

Query: 100 DLPVDLSLILNNCGKICPSDFKC 122
           +LP+ LSLILN CGK  P+ F C
Sbjct: 144 NLPIHLSLILNFCGKGVPTGFMC 166
>Os03g0103200 Similar to Physical impedance induced protein
          Length = 141

 Score = 81.3 bits (199), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/83 (56%), Positives = 53/83 (63%), Gaps = 1/83 (1%)

Query: 40  CPRDALKLRVCANVLGLVKAKVGAVAPYEPCCSXXXXXXXXXXXXXXCTAVKANVLGIKL 99
           CP DALKL VCANVL L+K KVG V   E CC               CTA+KANVLGI +
Sbjct: 57  CPIDALKLGVCANVLNLLKLKVG-VPASEECCPLLGGLVDLDAAVCLCTAIKANVLGINI 115

Query: 100 DLPVDLSLILNNCGKICPSDFKC 122
           ++PVDL L+LN C K CPSDF C
Sbjct: 116 NVPVDLVLLLNYCHKTCPSDFSC 138
>Os10g0551800 Root-specific protein (RCc2 protein)
          Length = 146

 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/84 (57%), Positives = 54/84 (64%), Gaps = 3/84 (3%)

Query: 40  CPRDALKLRVCANVL-GLVKAKVGAVAPYEPCCSXXXXXXXXXXXXXXCTAVKANVLGIK 98
           CP DALKLRVCANVL G +   VG   PY+ CC               CTAVKANVLG+ 
Sbjct: 65  CPIDALKLRVCANVLNGALGVNVGH-GPYD-CCPLLAGLADADAAVCLCTAVKANVLGVN 122

Query: 99  LDLPVDLSLILNNCGKICPSDFKC 122
           L++PV+L LILN CGK CPSDF C
Sbjct: 123 LNVPVELKLILNKCGKTCPSDFTC 146
>Os03g0103300 Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor
           domain containing protein
          Length = 184

 Score = 76.6 bits (187), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 55/84 (65%), Gaps = 2/84 (2%)

Query: 40  CPRDALKLRVCANVL-GLVKAKVGAVAPYEPCCSXXXXXXXXXXXXXXCTAVKANVLGIK 98
           CP D LKL VCANVL GL+  ++G   P +PCCS              CTA++AN+LGI 
Sbjct: 100 CPIDTLKLGVCANVLNGLINVQLG-TPPRQPCCSLIQGLADLEAAVCLCTALRANILGIN 158

Query: 99  LDLPVDLSLILNNCGKICPSDFKC 122
           L+LP++LSL++N CG+  PS F+C
Sbjct: 159 LNLPINLSLLVNYCGRSVPSGFQC 182
>Os10g0349900 Similar to NT16 polypeptide
          Length = 126

 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/96 (52%), Positives = 57/96 (59%), Gaps = 4/96 (4%)

Query: 29  PAPRPRPSTGSCPRDALKLRVCANVL-GLVKAKVGAVAPYEPCCSXXXXXXXXXXXXXXC 87
           P P      G CP DALKLRVCAN+L GL+  K+G   P + CC               C
Sbjct: 33  PTPPSHDDHGRCPIDALKLRVCANLLNGLIGVKIGR-GP-DDCCPLLAGIADLDAAVCLC 90

Query: 88  TAVKANVLG-IKLDLPVDLSLILNNCGKICPSDFKC 122
           TA+KANVLG I L+LPVDLS+ILN CGK  PS F C
Sbjct: 91  TALKANVLGLINLNLPVDLSIILNKCGKNYPSGFTC 126
>Os04g0554800 Similar to RCc3 protein
          Length = 137

 Score = 72.4 bits (176), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 51/83 (61%), Gaps = 1/83 (1%)

Query: 40  CPRDALKLRVCANVLGLVKAKVGAVAPYEPCCSXXXXXXXXXXXXXXCTAVKANVLGIKL 99
           CP + LK   CA+VLG +  +VG V P +PCCS              CTA+KANVLG+ +
Sbjct: 55  CPVNTLKFGACADVLGAISGEVGQV-PAQPCCSLISGLADLEAAVCLCTAIKANVLGVVV 113

Query: 100 DLPVDLSLILNNCGKICPSDFKC 122
           ++PV LSL++N CGK  PS + C
Sbjct: 114 NIPVKLSLLVNYCGKCVPSGYTC 136
>Os06g0104800 
          Length = 122

 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/97 (45%), Positives = 56/97 (57%), Gaps = 5/97 (5%)

Query: 27  CPPAPRPRPSTGSCPRDALKLRVCANVL-GLVKAKVGAVAPYEPCCSXXXXXXXXXXXXX 85
           C   P P P+ G CP + +KL VCA+VL GL+ A   +  P EPCC              
Sbjct: 29  CDGHPCPTPA-GKCPINTVKLGVCADVLDGLIHA---STPPKEPCCPLIAGLADLDAAVC 84

Query: 86  XCTAVKANVLGIKLDLPVDLSLILNNCGKICPSDFKC 122
            C A+ AN+LG+ LD+PVDLSL+LN CG   P+ FKC
Sbjct: 85  VCLAINANLLGLNLDVPVDLSLLLNYCGCKLPAGFKC 121
>Os04g0612300 Similar to Cell wall-plasma membrane linker protein homolog
          Length = 202

 Score = 66.6 bits (161), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 50/86 (58%), Gaps = 2/86 (2%)

Query: 38  GSCPRDALKLRVCANVL-GLVKAKVGAVAPYEPCCSXXXXXXXXXXXXXXCTAVKANVLG 96
           G CP D LKL  C + L GLV A VGA A  + CC               CTA+KA  LG
Sbjct: 110 GKCPVDTLKLLACVDALNGLVHAVVGATAG-DTCCPLLSGVADLDAALCLCTAIKAKALG 168

Query: 97  IKLDLPVDLSLILNNCGKICPSDFKC 122
           + L LPV +S+++N+CGK  PSDF+C
Sbjct: 169 LSLVLPVAISVLVNDCGKYVPSDFQC 194
  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.141    0.476 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,511,973
Number of extensions: 120215
Number of successful extensions: 857
Number of sequences better than 1.0e-10: 27
Number of HSP's gapped: 834
Number of HSP's successfully gapped: 27
Length of query: 124
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 36
Effective length of database: 12,440,969
Effective search space: 447874884
Effective search space used: 447874884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 149 (62.0 bits)