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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0554800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to ExtA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.32 (0.0228) R2 : 0.00104
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.033 (0.0479) R2dN8 : 0.00134 R2N8 : 0.00104
σ : 0.429
deviance : 84.43
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
78.01 0.415 3.31 -0.149 0.25 -0.0356 -0.316 1.07 -0.0649 6.94 60.85 5617 -- --
79.25 0.415 3.33 -0.134 0.266 0.314 -0.278 -- -0.0284 6.31 40 5766 -- --
78.22 0.412 3.31 -0.152 0.246 -0.0318 -- 1.08 -0.0623 7.05 59.49 5692 -- --
79.16 0.414 3.31 -0.2 0.25 0.305 -- -- -0.0361 6.98 38.02 5900 -- --
81.15 0.42 3.32 -0.177 -- -0.0573 -- 1.41 -0.0639 -- 59.96 6534 -- --
80.84 0.422 3.32 -0.0744 0.247 -- -0.323 -- -0.0468 6.88 -- -- -- --
81.11 0.422 3.32 -0.08 0.246 -- -- -- -0.0459 6.94 -- -- -- --
82.44 0.423 3.32 -0.192 -- 0.297 -- -- -0.0318 -- 37.5 6472 -- --
80.05 0.417 3.31 -- 0.247 0.222 -- -- -0.0201 7.01 35.1 8878 -- --
84.28 0.429 3.32 -0.0748 -- -- -- -- -0.0413 -- -- -- -- --
81.28 0.422 3.31 -- 0.245 -- -- -- -0.037 6.96 -- -- -- --
81.94 0.422 3.34 -- -- 0.285 -- -- -0.00571 -- 44.39 15586 -- --
84.43 0.429 3.32 -- -- -- -- -- -0.033 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 70.16 atmosphere 1005.0 10 > th dose dependent rect. 2 4
3 70.99 temperature 25.0 90 > th dose dependent rect. 1 3
4 71.01 temperature 25.0 90 > th dose independent rect. 1 3
6 71.16 atmosphere 1005.0 270 > th dose dependent rect. 2 1
8 71.36 radiation 1.0 43200 < th dose dependent rect. 3 1
12 72.08 atmosphere 1000.0 30 > th dose independent rect. 3 23
28 72.48 wind 9.0 1440 < th dose independent rect. 3 1
29 72.48 temperature 10.0 1440 > th dose independent rect. 3 1
32 72.48 temperature 30.0 1440 < th dose independent rect. 3 1
36 72.48 humidity 50.0 1440 > th dose independent rect. 3 1
45 72.48 atmosphere 995.0 1440 > th dose independent rect. 3 1
46 72.48 radiation 1.0 1440 < th dose independent rect. 3 1
66 72.48 temperature 10.0 1440 > th dose independent rect. 4 23
81 72.55 temperature 25.0 90 > th dose independent rect. 1 1
94 72.68 atmosphere 1005.0 30 > th dose independent rect. 2 1
98 72.70 wind 3.0 30 < th dose dependent rect. 2 1
99 72.71 wind 3.0 30 < th dose independent rect. 2 1
105 72.75 humidity 90.0 270 < th dose independent rect. 1 5
110 72.78 humidity 80.0 30 > th dose independent rect. 2 1
113 72.79 temperature 10.0 30 > th dose independent rect. 2 1
115 72.79 temperature 30.0 30 < th dose independent rect. 2 1
116 72.79 humidity 50.0 30 > th dose independent rect. 2 1
120 72.79 atmosphere 1010.0 30 < th dose independent rect. 2 1
122 72.79 radiation 1.0 30 < th dose independent rect. 2 1
127 72.79 precipitation 0.1 30 < th dose independent rect. 2 1
128 72.79 temperature 10.0 30 > th dose independent rect. 3 23
129 72.79 humidity 50.0 30 > th dose dependent rect. 2 1
133 72.79 radiation 1.0 30 < th dose dependent rect. 2 1
138 72.79 precipitation 0.1 30 < th dose dependent rect. 2 1
146 72.93 atmosphere 1015.0 30 < th dose dependent rect. 2 1
150 73.03 wind 1.0 30 > th dose independent rect. 2 1
151 73.03 temperature 30.0 30 < th dose dependent rect. 2 1
167 73.24 precipitation 0.1 30 < th dose independent rect. 3 23
168 73.24 precipitation 0.1 30 < th dose dependent rect. 3 23
200 73.45 wind 9.0 30 < th dose independent rect. 3 23
235 74.11 humidity 50.0 30 > th dose independent rect. 3 23
239 74.22 humidity 90.0 270 < th dose dependent rect. 3 2
244 74.27 humidity 90.0 270 < th dose dependent rect. 1 5
248 74.39 atmosphere 1005.0 30 > th dose independent rect. 2 6
251 74.40 humidity 80.0 10 < th dose independent rect. 5 3
256 74.47 humidity 80.0 10 < th dose independent rect. 23 9
279 74.64 radiation 20.0 10 < th dose dependent rect. 16 10
280 74.65 humidity 90.0 10 < th dose dependent rect. 3 3
281 74.68 radiation 10.0 10 < th dose independent rect. 16 10
295 74.79 atmosphere 1000.0 30 > th dose independent rect. 16 10
316 74.98 radiation 30.0 10 < th dose independent rect. 16 10
327 75.07 wind 9.0 10 < th dose independent rect. 16 10
331 75.13 radiation 10.0 30 > th dose independent rect. 7 1
337 75.14 precipitation 0.1 30 < th dose independent rect. 2 14
338 75.14 precipitation 0.1 30 < th dose dependent rect. 2 14
344 75.16 temperature 10.0 1440 > th dose independent rect. 17 10
347 75.16 radiation 30.0 1440 < th dose independent rect. 17 10
353 75.16 temperature 10.0 1440 > th dose independent rect. 3 14
359 75.17 humidity 50.0 30 > th dose independent rect. 16 10
367 75.19 radiation 10.0 10 < th dose independent sin 13 NA
370 75.19 humidity 50.0 10 > th dose independent rect. 2 14
380 75.24 temperature 10.0 30 > th dose independent rect. 16 10
382 75.24 temperature 10.0 30 > th dose independent rect. 2 14
384 75.24 atmosphere 1015.0 30 < th dose independent rect. 2 14
391 75.28 atmosphere 1000.0 10 > th dose independent rect. 2 14
393 75.28 wind 5.0 30 < th dose dependent rect. 2 6
394 75.29 precipitation 0.1 30 < th dose independent rect. 16 10
398 75.29 precipitation 0.1 30 < th dose dependent rect. 16 10
401 75.32 radiation 10.0 10 < th dose independent rect. 14 12
403 75.33 atmosphere 1005.0 30 > th dose independent rect. 2 4
417 75.43 radiation 10.0 10 < th dose independent rect. 12 14
431 75.53 wind 9.0 30 < th dose independent rect. 2 14
440 75.57 radiation 10.0 10 < th dose dependent rect. 10 16
445 75.60 wind 3.0 30 < th dose independent rect. 2 6
447 75.60 temperature 30.0 30 < th dose independent rect. 2 14
463 75.67 temperature 30.0 10 < th dose independent rect. 16 10
467 75.70 atmosphere 1000.0 30 > th dose independent rect. 8 18
488 75.81 radiation 10.0 10 < th dose dependent rect. 8 18
493 75.83 radiation 10.0 10 > th dose independent rect. 15 17
502 75.88 radiation 10.0 30 < th dose independent rect. 3 23
548 76.01 radiation 10.0 10 < th dose dependent rect. 5 21
588 76.05 wind 5.0 14400 < th dose dependent rect. 11 1
598 76.07 radiation 10.0 30 < th dose dependent rect. 3 23
611 76.11 temperature 30.0 270 < th dose independent rect. 11 18
659 76.25 temperature 30.0 270 < th dose independent rect. 9 22
660 76.26 temperature 30.0 270 < th dose independent rect. 10 11
667 76.28 wind 9.0 30 < th dose independent rect. 8 18
668 76.28 radiation 10.0 10 < th dose independent rect. 8 18
674 76.31 atmosphere 1005.0 270 > th dose independent rect. 1 4
676 76.32 precipitation 0.1 30 < th dose independent rect. 2 6
679 76.32 precipitation 0.1 30 < th dose dependent rect. 2 6
686 76.34 wind 9.0 1440 < th dose independent rect. 3 6
687 76.34 temperature 10.0 1440 > th dose independent rect. 3 6
690 76.34 humidity 50.0 1440 > th dose independent rect. 3 6
692 76.34 atmosphere 995.0 1440 > th dose independent rect. 3 6
693 76.34 temperature 10.0 1440 > th dose independent rect. 9 18
697 76.34 wind 1.0 14400 > th dose dependent rect. 11 1
700 76.35 humidity 80.0 1440 > th dose independent rect. 24 3
704 76.35 humidity 50.0 1440 > th dose independent rect. 18 9
724 76.36 temperature 10.0 30 > th dose independent rect. 2 6
726 76.36 temperature 30.0 30 < th dose independent rect. 2 6
727 76.36 humidity 50.0 30 > th dose independent rect. 2 6
729 76.36 atmosphere 995.0 30 > th dose independent rect. 2 6
731 76.36 atmosphere 1015.0 30 < th dose independent rect. 2 6
733 76.36 temperature 10.0 30 > th dose independent rect. 8 18
738 76.37 humidity 50.0 30 > th dose independent rect. 8 18
745 76.38 temperature 10.0 30 > th dose dependent rect. 2 6
746 76.39 wind 3.0 14400 > th dose independent rect. 10 2
753 76.40 precipitation 0.1 30 < th dose independent rect. 8 18
757 76.40 precipitation 0.1 30 < th dose dependent rect. 8 18
777 76.45 humidity 80.0 1440 > th dose independent rect. 24 5
789 76.47 wind 3.0 90 < th dose independent rect. 1 15
790 76.47 temperature 30.0 270 < th dose independent rect. 10 20
799 76.49 atmosphere 995.0 720 > th dose independent rect. 23 16
802 76.50 radiation 10.0 30 < th dose independent rect. 5 21
805 76.52 wind 3.0 14400 < th dose independent rect. 11 1
806 76.52 temperature 25.0 720 < th dose independent rect. 23 3
823 76.53 radiation 1.0 10 > th dose dependent rect. 15 17
858 76.56 wind 5.0 14400 < th dose independent rect. 9 6
859 76.56 wind 5.0 14400 < th dose independent rect. 8 9
868 76.57 wind 1.0 30 > th dose independent rect. 16 10
870 76.57 wind 9.0 30 < th dose dependent rect. 2 14
871 76.58 wind 7.0 14400 < th dose independent rect. 9 1
878 76.58 radiation 40.0 30 < th dose independent rect. 2 6
886 76.58 humidity 80.0 14400 < th dose dependent rect. 2 7
890 76.59 humidity 60.0 10 > th dose independent rect. 14 12
923 76.65 wind 5.0 14400 > th dose independent rect. 8 9
928 76.66 radiation 10.0 10 > th dose independent rect. 13 19
932 76.67 wind 5.0 14400 > th dose independent rect. 9 6
952 76.71 wind 3.0 30 < th dose dependent rect. 2 3
976 76.74 humidity 50.0 10 > th dose dependent rect. 16 10