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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0554800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to RCc3 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.12 (0.0407) R2 : 0.0753
β1 : -0.78 (0.149) R2dD : 0.0576 R2D : 0.0304
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.353 (0.0869) R2dN8 : 0.0448 R2N8 : 0.0177
σ : 0.764
deviance : 267.56
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
236.42 0.722 3.07 -0.669 0.441 -0.548 -0.823 -7.6 -0.301 11.1 8.988 117 -- --
238.81 0.72 3.1 -0.616 0.439 1.51 -0.898 -- -0.302 10.9 9.8 127 -- --
239.18 0.72 3.07 -0.701 0.442 -0.768 -- -8.82 -0.297 11 8.955 116 -- --
242.6 0.725 3.1 -0.629 0.447 1.66 -- -- -0.305 10.9 9.8 127 -- --
251.07 0.738 3.07 -0.71 -- -0.884 -- -9.29 -0.301 -- 9.4 116 -- --
247.5 0.738 3.11 -0.721 0.474 -- -1.14 -- -0.343 11.6 -- -- -- --
253.12 0.745 3.11 -0.767 0.48 -- -- -- -0.348 11.4 -- -- -- --
255.01 0.744 3.11 -0.646 -- 1.8 -- -- -0.308 -- 9.786 127 -- --
252.64 0.74 3.09 -- 0.431 1.98 -- -- -0.234 10.9 9.787 127 -- --
267.56 0.764 3.12 -0.78 -- -- -- -- -0.353 -- -- -- -- --
268.64 0.767 3.09 -- 0.488 -- -- -- -0.263 11.5 -- -- -- --
264.94 0.758 3.09 -- -- 2.14 -- -- -0.228 -- 9.8 126 -- --
283.61 0.786 3.1 -- -- -- -- -- -0.267 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 227.72 wind 7 10 < th dose independent rect. 12 23
2 228.05 wind 7 90 < th dose independent rect. 12 23
3 228.39 temperature 30 90 < th dose dependent rect. 10 1
6 229.73 wind 5 270 > th dose independent rect. 7 1
7 229.77 wind 5 270 > th dose independent rect. 5 4
14 230.16 wind 3 30 > th dose independent rect. 6 6
15 230.17 wind 7 270 < th dose independent rect. 2 13
17 230.20 wind 3 30 > th dose independent rect. 3 9
26 230.44 atmosphere 1000 14400 > th dose independent rect. 4 1
28 230.56 wind 1 10 > th dose dependent rect. 7 5
34 230.69 wind 3 270 > th dose dependent rect. 7 2
35 230.70 temperature 30 270 < th dose dependent rect. 8 1
44 230.86 atmosphere 1000 14400 < th dose independent rect. 4 1
48 230.92 atmosphere 1000 14400 > th dose independent rect. 16 1
53 231.07 wind 3 270 > th dose dependent rect. 5 4
55 231.17 atmosphere 1000 14400 > th dose independent rect. 10 7
63 231.27 radiation 1 90 > th dose dependent rect. 12 22
67 231.30 atmosphere 1000 14400 > th dose independent rect. 21 20
69 231.32 atmosphere 1000 14400 > th dose independent rect. 3 14
73 231.34 atmosphere 1000 14400 > th dose independent rect. 4 20
76 231.36 temperature 30 270 < th dose dependent rect. 7 13
85 231.39 atmosphere 1000 14400 < th dose dependent rect. 15 2
105 231.47 atmosphere 1000 14400 < th dose independent rect. 4 20
108 231.47 wind 1 10 > th dose dependent rect. 4 8
116 231.50 atmosphere 1000 14400 > th dose independent rect. 13 4
126 231.51 atmosphere 1000 14400 > th dose independent sin 23 NA
140 231.53 atmosphere 1000 14400 > th dose independent rect. 16 23
160 231.56 atmosphere 1000 14400 < th dose independent rect. 19 20
175 231.58 atmosphere 1000 14400 < th dose independent rect. 21 20
179 231.58 atmosphere 1000 14400 > th dose independent rect. 13 23
188 231.60 atmosphere 1000 14400 > th dose independent no NA NA
193 231.60 atmosphere 1000 14400 > th dose independent rect. 16 20
217 231.62 atmosphere 1000 14400 > th dose independent rect. 6 23
232 231.63 atmosphere 1000 14400 < th dose independent rect. 16 23
331 231.72 atmosphere 1000 14400 < th dose independent no NA NA
345 231.73 atmosphere 1000 14400 < th dose independent rect. 13 23
347 231.73 temperature 10 90 > th dose dependent rect. 12 12
348 231.74 atmosphere 1000 14400 < th dose independent rect. 3 14
360 231.74 atmosphere 1000 14400 < th dose independent rect. 6 23
369 231.75 atmosphere 1000 14400 < th dose independent sin 23 NA
385 231.76 atmosphere 1000 14400 < th dose independent rect. 10 7
427 231.78 radiation 30 270 < th dose dependent rect. 8 1
485 231.83 atmosphere 1000 14400 < th dose independent sin 7 NA
501 231.84 atmosphere 1000 14400 < th dose dependent rect. 11 8
663 232.01 atmosphere 1000 14400 > th dose independent rect. 10 4
676 232.02 atmosphere 1000 14400 > th dose independent rect. 13 1
742 232.09 temperature 15 90 > th dose independent rect. 12 23
755 232.11 atmosphere 995 30 > th dose independent rect. 12 23
766 232.12 wind 1 90 > th dose dependent rect. 16 20
779 232.14 temperature 30 90 < th dose dependent rect. 10 13
817 232.20 temperature 25 90 < th dose independent rect. 10 1
898 232.30 wind 1 10 > th dose dependent rect. 17 20
907 232.32 atmosphere 1000 14400 > th dose independent rect. 11 1
932 232.34 wind 9 30 < th dose dependent rect. 12 23
935 232.35 atmosphere 1000 14400 < th dose independent rect. 11 1
941 232.35 radiation 20 90 > th dose independent rect. 12 22
951 232.37 atmosphere 1000 14400 < th dose independent rect. 13 1
960 232.38 atmosphere 1000 14400 < th dose independent rect. 16 1