Os03g0801200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor domain containing protein.
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Os03g0801200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 253.7 | 0.748 | 7.72 | -2.08 | 1.45 | 3.87 | 1.17 | 2.76 | -0.958 | 7.4 | 19.5 | 6385 | -- | -- |
| 265.44 | 0.759 | 7.62 | -1.59 | 1.45 | 3.54 | 1.23 | -- | -0.823 | 7.44 | 19.1 | 7766 | -- | -- |
| 256.36 | 0.746 | 7.73 | -2.04 | 1.46 | 3.96 | -- | 2.99 | -0.97 | 7.28 | 19.39 | 6395 | -- | -- |
| 265.83 | 0.759 | 7.62 | -1.78 | 1.45 | 3.26 | -- | -- | -0.933 | 7.43 | 19.1 | 6285 | -- | -- |
| 368.31 | 0.894 | 7.76 | -1.97 | -- | 4.12 | -- | 3.2 | -0.906 | -- | 19.3 | 6420 | -- | -- |
| 405.85 | 0.944 | 7.8 | -3.98 | 1.48 | -- | 1.27 | -- | -1.75 | 7.57 | -- | -- | -- | -- |
| 410.17 | 0.948 | 7.81 | -3.95 | 1.49 | -- | -- | -- | -1.75 | 7.44 | -- | -- | -- | -- |
| 378.75 | 0.906 | 7.65 | -1.77 | -- | 3.28 | -- | -- | -0.89 | -- | 19.1 | 6396 | -- | -- |
| 290.2 | 0.793 | 7.54 | -- | 1.3 | 3.79 | -- | -- | -0.53 | 7 | 18.2 | 40004 | -- | -- |
| 528.33 | 1.07 | 7.84 | -3.93 | -- | -- | -- | -- | -1.72 | -- | -- | -- | -- | -- |
| 821.48 | 1.34 | 7.71 | -- | 1.45 | -- | -- | -- | -1.31 | 7.62 | -- | -- | -- | -- |
| 401.94 | 0.934 | 7.55 | -- | -- | 3.81 | -- | -- | -0.483 | -- | 18 | 42402 | -- | -- |
| 935.1 | 1.43 | 7.74 | -- | -- | -- | -- | -- | -1.29 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 258.80 | temperature | 25 | 4320 | < th | dose dependent | rect. | 12 | 16 |
| 14 | 259.51 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 25 | 259.76 | temperature | 25 | 4320 | < th | dose dependent | sin | 15 | NA |
| 34 | 259.98 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 5 |
| 38 | 260.08 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 3 |
| 103 | 261.91 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 135 | 262.57 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 3 |
| 141 | 262.72 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 146 | 262.77 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 147 | 262.77 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 4 |
| 171 | 263.08 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 6 |
| 236 | 263.69 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 240 | 263.74 | temperature | 25 | 4320 | < th | dose dependent | rect. | 19 | 23 |
| 246 | 263.77 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 23 |
| 248 | 263.82 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 259 | 263.85 | temperature | 25 | 4320 | < th | dose dependent | rect. | 15 | 23 |
| 338 | 264.25 | temperature | 25 | 4320 | < th | dose dependent | rect. | 23 | 23 |
| 416 | 264.74 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 454 | 264.98 | temperature | 20 | 4320 | > th | dose independent | rect. | 12 | 16 |
| 463 | 265.05 | temperature | 20 | 4320 | < th | dose independent | rect. | 12 | 16 |
| 485 | 265.19 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 580 | 265.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 658 | 266.15 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 807 | 266.90 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 23 |