Os04g0554600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RCc3 protein.
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Os04g0554600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RCc3 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 164.64 | 0.603 | 10.2 | 1.01 | 0.467 | -1.09 | 0.759 | 1.02 | -0.166 | 8.75 | 21.9 | 1461 | -- | -- |
| 167.14 | 0.602 | 10.3 | 0.783 | 0.444 | -1.23 | 0.837 | -- | -0.224 | 8.13 | 21.4 | 1389 | -- | -- |
| 166.19 | 0.6 | 10.2 | 1.04 | 0.468 | -1.08 | -- | 1.06 | -0.152 | 9 | 22.2 | 1477 | -- | -- |
| 168.56 | 0.605 | 10.3 | 0.799 | 0.453 | -1.23 | -- | -- | -0.252 | 8.8 | 21.33 | 1367 | -- | -- |
| 176.43 | 0.619 | 10.3 | 0.938 | -- | -1.03 | -- | 0.802 | -0.188 | -- | 22.2 | 980 | -- | -- |
| 209.73 | 0.679 | 10.3 | 0.268 | 0.474 | -- | 0.665 | -- | -0.595 | 9.03 | -- | -- | -- | -- |
| 211.21 | 0.681 | 10.3 | 0.292 | 0.47 | -- | -- | -- | -0.593 | 9.29 | -- | -- | -- | -- |
| 178.27 | 0.622 | 10.3 | 0.63 | -- | -0.965 | -- | -- | -0.218 | -- | 22.22 | 817 | -- | -- |
| 180.18 | 0.625 | 10.3 | -- | 0.464 | -0.878 | -- | -- | -0.36 | 8.87 | 22.4 | 1454 | -- | -- |
| 224.06 | 0.699 | 10.4 | 0.29 | -- | -- | -- | -- | -0.591 | -- | -- | -- | -- | -- |
| 213.46 | 0.683 | 10.4 | -- | 0.47 | -- | -- | -- | -0.626 | 9.24 | -- | -- | -- | -- |
| 187.48 | 0.638 | 10.3 | -- | -- | -0.886 | -- | -- | -0.357 | -- | 22.26 | 823 | -- | -- |
| 226.28 | 0.702 | 10.4 | -- | -- | -- | -- | -- | -0.623 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 165.17 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 2 | 165.25 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 10 | 165.69 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 14 |
| 12 | 165.74 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 16 | 165.77 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 21 | 165.83 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 32 | 165.92 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 10 |
| 56 | 166.07 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 174 | 166.93 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 199 | 167.08 | humidity | 90 | 14400 | > th | dose dependent | sin | 13 | NA |
| 214 | 167.24 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 4 |
| 255 | 167.49 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 456 | 168.31 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 457 | 168.32 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 495 | 168.40 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 500 | 168.42 | humidity | 90 | 14400 | > th | dose dependent | sin | 7 | NA |
| 588 | 168.71 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 589 | 168.72 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 9 |
| 702 | 169.09 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 14 |
| 710 | 169.12 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 733 | 169.20 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 756 | 169.26 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 846 | 169.54 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 847 | 169.54 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 855 | 169.56 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 1 |