Os04g0554500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RCc3 protein.
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Os04g0554500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RCc3 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 272.74 | 0.776 | 3.08 | 0.224 | 0.327 | 11.8 | -0.427 | 21.5 | -0.159 | 6.69 | 0.8925 | 75 | 12 | 5 |
| 284.99 | 0.786 | 3.03 | 0.202 | 0.288 | 4.79 | -0.917 | -- | -0.109 | 5.45 | 1.388 | 90 | 11.7 | 5.3 |
| 271.44 | 0.767 | 3.08 | 0.232 | 0.26 | 14.5 | -- | 29.3 | -0.177 | 7.84 | 0.7967 | 73 | 12 | 4.97 |
| 286.81 | 0.789 | 3.05 | 0.184 | 0.34 | 4.72 | -- | -- | -0.13 | 6.56 | 1.684 | 90 | 11.7 | 5.32 |
| 274.72 | 0.772 | 3.13 | 0.328 | -- | 17.6 | -- | 38.3 | -0.163 | -- | 0.7797 | 71 | 12 | 4.98 |
| 330.96 | 0.853 | 3.05 | -0.0156 | 0.193 | -- | -0.261 | -- | -0.218 | 8.49 | -- | -- | -- | -- |
| 331.17 | 0.852 | 3.05 | -0.0233 | 0.193 | -- | -- | -- | -0.218 | 8.69 | -- | -- | -- | -- |
| 291.61 | 0.795 | 3.04 | 0.157 | -- | 4.39 | -- | -- | -0.14 | -- | 1.57 | 90 | 11.6 | 5.38 |
| 287.14 | 0.789 | 3.04 | -- | 0.322 | 4.54 | -- | -- | -0.177 | 6.73 | 1.621 | 90 | 11.6 | 5.4 |
| 333.26 | 0.853 | 3.06 | -0.0229 | -- | -- | -- | -- | -0.216 | -- | -- | -- | -- | -- |
| 331.18 | 0.851 | 3.05 | -- | 0.193 | -- | -- | -- | -0.215 | 8.7 | -- | -- | -- | -- |
| 292.21 | 0.796 | 3.04 | -- | -- | 4.29 | -- | -- | -0.163 | -- | 1.62 | 90 | 11.7 | 5.35 |
| 333.28 | 0.852 | 3.05 | -- | -- | -- | -- | -- | -0.214 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 277.11 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 12 | 5 |
| 6 | 281.29 | radiation | 1.0 | 90 | < th | dose independent | rect. | 12 | 5 |
| 13 | 287.35 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 11 | 2 |
| 14 | 287.47 | humidity | 90.0 | 270 | > th | dose independent | rect. | 11 | 2 |
| 16 | 287.50 | radiation | 1.0 | 270 | < th | dose independent | rect. | 12 | 1 |
| 18 | 287.50 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 12 | 1 |
| 44 | 292.15 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 51 | 294.50 | radiation | 1.0 | 90 | < th | dose independent | rect. | 5 | 12 |
| 84 | 298.47 | radiation | 1.0 | 10 | < th | dose independent | rect. | 5 | 11 |
| 107 | 302.14 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 6 | 10 |
| 142 | 303.90 | radiation | 1.0 | 10 | < th | dose independent | rect. | 13 | 3 |
| 144 | 303.94 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 9 | 10 |
| 147 | 304.17 | humidity | 90.0 | 10 | > th | dose independent | rect. | 9 | 10 |
| 153 | 304.45 | wind | 3.0 | 10 | > th | dose independent | rect. | 5 | 1 |
| 166 | 304.93 | wind | 3.0 | 90 | > th | dose dependent | rect. | 4 | 3 |
| 184 | 305.74 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 2 | 1 |
| 189 | 305.84 | radiation | 1.0 | 10 | < th | dose independent | rect. | 6 | 1 |
| 191 | 305.84 | humidity | 90.0 | 270 | < th | dose independent | rect. | 2 | 2 |
| 218 | 306.72 | wind | 5.0 | 90 | > th | dose independent | rect. | 12 | 3 |
| 247 | 307.68 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 2 | 3 |
| 252 | 308.04 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 4 | 3 |
| 257 | 308.06 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 4 | 3 |
| 258 | 308.06 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 4 | 4 |
| 337 | 308.15 | wind | 7.0 | 90 | > th | dose dependent | rect. | 13 | 2 |
| 387 | 309.07 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 23 | 7 |
| 412 | 309.60 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 13 | 6 |
| 443 | 309.88 | humidity | 90.0 | 10 | > th | dose independent | rect. | 13 | 6 |
| 448 | 310.01 | radiation | 1.0 | 10 | < th | dose independent | rect. | 13 | 1 |
| 460 | 310.01 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 13 | 1 |
| 478 | 310.17 | humidity | 90.0 | 10 | > th | dose independent | rect. | 17 | 1 |
| 488 | 310.17 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 532 | 310.92 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 23 | 7 |
| 542 | 311.02 | temperature | 20.0 | 90 | < th | dose independent | rect. | 8 | 1 |
| 549 | 311.10 | wind | 3.0 | 10 | > th | dose independent | rect. | 12 | 4 |
| 564 | 311.30 | wind | 1.0 | 90 | > th | dose dependent | rect. | 12 | 18 |
| 585 | 311.56 | wind | 1.0 | 10 | > th | dose dependent | rect. | 12 | 4 |
| 595 | 311.68 | radiation | 20.0 | 270 | < th | dose independent | rect. | 12 | 1 |
| 601 | 311.79 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 23 | 7 |
| 617 | 312.09 | humidity | 90.0 | 30 | < th | dose independent | rect. | 12 | 18 |
| 654 | 312.42 | wind | 3.0 | 10 | > th | dose independent | rect. | 12 | 19 |
| 661 | 312.55 | radiation | 1.0 | 90 | < th | dose independent | rect. | 19 | 21 |
| 662 | 312.64 | wind | 5.0 | 10 | > th | dose independent | rect. | 13 | 1 |
| 712 | 313.13 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 6 | 1 |
| 718 | 313.21 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 12 | 1 |
| 740 | 313.48 | radiation | 1.0 | 10 | > th | dose independent | rect. | 18 | 18 |
| 742 | 313.48 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 11 | 19 |
| 750 | 313.55 | radiation | 1.0 | 10 | < th | dose independent | rect. | 18 | 23 |
| 752 | 313.59 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 17 | 1 |
| 754 | 313.59 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 17 | 1 |
| 756 | 313.60 | radiation | 1.0 | 10 | > th | dose independent | rect. | 5 | 7 |
| 779 | 313.72 | radiation | 1.0 | 90 | < th | dose independent | rect. | 20 | 23 |
| 804 | 313.96 | wind | 9.0 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 807 | 313.98 | radiation | 1.0 | 90 | > th | dose independent | rect. | 13 | 23 |
| 816 | 314.03 | radiation | 1.0 | 270 | < th | dose independent | rect. | 11 | 19 |
| 831 | 314.08 | humidity | 80.0 | 270 | < th | dose independent | rect. | 6 | 1 |
| 833 | 314.08 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 838 | 314.16 | humidity | 90.0 | 30 | < th | dose independent | rect. | 2 | 4 |
| 864 | 314.41 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 19 | 21 |
| 884 | 314.55 | humidity | 90.0 | 10 | > th | dose independent | rect. | 6 | 13 |
| 893 | 314.66 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 2 | 4 |
| 926 | 315.02 | radiation | 1.0 | 90 | > th | dose independent | sin | 1 | NA |
| 928 | 315.04 | temperature | 20.0 | 10 | > th | dose independent | rect. | 12 | 4 |
| 929 | 315.06 | radiation | 1.0 | 90 | < th | dose independent | sin | 1 | NA |
| 971 | 315.37 | temperature | 25.0 | 90 | < th | dose independent | rect. | 12 | 4 |
| 980 | 315.44 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 984 | 315.46 | temperature | 25.0 | 270 | < th | dose independent | rect. | 12 | 2 |
| 998 | 315.63 | humidity | 60.0 | 10 | > th | dose independent | rect. | 12 | 4 |