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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0662100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Tfm5 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.32 (0.021) R2 : 0.00615
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0744 (0.0443) R2dN8 : 0.00794 R2N8 : 0.00615
σ : 0.396
deviance : 72.08
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
66.05 0.382 3.32 0.00289 0.178 0.0437 0.0128 1.73 -0.0677 9.53 80.72 4284 -- --
69.48 0.388 3.33 -0.0619 0.172 0.242 0.00919 -- -0.129 9.28 87 5905 -- --
66.05 0.379 3.32 0.00463 0.178 0.0436 -- 1.73 -0.0668 9.55 81 4283 -- --
69.47 0.388 3.33 -0.048 0.169 0.255 -- -- -0.13 9.18 87 5914 -- --
67.91 0.384 3.32 0.0116 -- 0.0615 -- 1.71 -0.0679 -- 81.82 4311 -- --
70.3 0.393 3.32 -0.0586 0.17 -- 0.0158 -- -0.0817 9.25 -- -- -- --
70.3 0.393 3.32 -0.058 0.17 -- -- -- -0.0817 9.28 -- -- -- --
71.13 0.393 3.33 -0.0435 -- 0.255 -- -- -0.128 -- 87 5876 -- --
69.53 0.388 3.33 -- 0.169 0.261 -- -- -0.125 9.13 87 5920 -- --
71.99 0.396 3.32 -0.0587 -- -- -- -- -0.0809 -- -- -- -- --
70.39 0.392 3.32 -- 0.17 -- -- -- -0.0752 9.3 -- -- -- --
71.18 0.393 3.33 -- -- 0.261 -- -- -0.122 -- 87 5878 -- --
72.08 0.396 3.32 -- -- -- -- -- -0.0744 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 60.34 radiation 1.0 43200 < th dose dependent rect. 3 1
2 60.42 atmosphere 1005.0 90 > th dose dependent rect. 2 1
3 60.44 atmosphere 1000.0 30 > th dose independent rect. 3 23
5 60.78 atmosphere 1010.0 30 < th dose dependent rect. 2 1
9 60.98 wind 3.0 10 < th dose independent rect. 2 1
10 60.99 wind 5.0 10 < th dose dependent rect. 2 1
17 61.05 atmosphere 1005.0 10 > th dose dependent rect. 2 2
21 61.07 temperature 10.0 10 > th dose independent rect. 2 1
23 61.07 temperature 30.0 10 < th dose independent rect. 2 1
24 61.07 humidity 50.0 10 > th dose independent rect. 2 1
27 61.07 atmosphere 995.0 10 > th dose independent rect. 2 1
28 61.07 atmosphere 1010.0 10 < th dose independent rect. 2 1
30 61.07 radiation 1.0 10 < th dose independent rect. 2 1
35 61.07 precipitation 0.1 10 < th dose independent rect. 2 1
36 61.07 temperature 10.0 10 > th dose independent rect. 3 23
38 61.07 radiation 1.0 10 < th dose dependent rect. 2 1
43 61.07 precipitation 0.1 10 < th dose dependent rect. 2 1
46 61.08 temperature 30.0 30 < th dose dependent rect. 2 1
53 61.09 temperature 10.0 10 > th dose dependent rect. 2 1
54 61.09 humidity 50.0 10 > th dose dependent rect. 2 1
55 61.09 humidity 90.0 30 > th dose dependent rect. 2 1
85 61.12 humidity 90.0 30 > th dose independent rect. 2 1
96 61.16 wind 1.0 30 > th dose independent rect. 2 1
101 61.17 atmosphere 995.0 30 > th dose dependent rect. 2 1
111 61.29 temperature 10.0 30 > th dose dependent rect. 3 23
113 61.33 temperature 20.0 90 < th dose independent rect. 11 4
118 61.46 wind 9.0 10 < th dose independent rect. 3 23
120 61.59 temperature 20.0 30 < th dose independent rect. 10 6
126 61.64 precipitation 0.1 30 < th dose independent rect. 3 23
127 61.64 precipitation 0.1 30 < th dose dependent rect. 3 23
152 61.97 wind 9.0 1440 < th dose independent rect. 3 1
153 61.97 temperature 10.0 1440 > th dose independent rect. 3 1
156 61.97 temperature 30.0 1440 < th dose independent rect. 3 1
160 61.97 humidity 50.0 1440 > th dose independent rect. 3 1
169 61.97 atmosphere 995.0 1440 > th dose independent rect. 3 1
170 61.97 radiation 1.0 1440 < th dose independent rect. 3 1
190 61.97 temperature 10.0 1440 > th dose independent rect. 4 23
202 62.04 temperature 20.0 270 < th dose independent rect. 11 1
211 62.48 temperature 20.0 270 < th dose dependent rect. 11 3
214 62.52 temperature 20.0 270 < th dose dependent rect. 9 6
225 62.82 atmosphere 1015.0 4320 > th dose independent rect. 14 6
254 63.22 atmosphere 1015.0 4320 > th dose dependent rect. 14 7
266 63.39 atmosphere 1015.0 4320 > th dose dependent rect. 14 4
268 63.42 humidity 50.0 30 > th dose independent rect. 3 23
270 63.45 atmosphere 1015.0 4320 < th dose independent rect. 16 4
274 63.46 temperature 15.0 720 < th dose independent rect. 4 9
275 63.47 temperature 15.0 720 < th dose dependent rect. 4 9
277 63.49 temperature 15.0 720 < th dose independent rect. 4 1
285 63.49 temperature 15.0 720 < th dose dependent rect. 4 1
295 63.52 atmosphere 1015.0 4320 > th dose dependent rect. 14 1
312 63.69 radiation 20.0 1440 < th dose independent rect. 17 11
340 63.76 humidity 50.0 4320 > th dose dependent rect. 11 1
344 63.79 humidity 90.0 4320 < th dose dependent rect. 11 1
357 63.82 temperature 20.0 720 > th dose independent rect. 3 12
375 63.95 atmosphere 1015.0 4320 > th dose independent rect. 16 1
380 63.95 atmosphere 1015.0 4320 > th dose dependent rect. 16 1
396 64.01 humidity 90.0 90 < th dose independent rect. 2 1
418 64.11 temperature 25.0 10 < th dose independent rect. 2 16
431 64.17 wind 1.0 14400 < th dose dependent rect. 6 1
434 64.18 humidity 90.0 270 > th dose independent rect. 11 1
435 64.18 precipitation 0.1 270 > th dose independent rect. 10 1
442 64.18 humidity 90.0 270 > th dose dependent rect. 11 1
443 64.18 precipitation 0.1 270 > th dose dependent rect. 10 1
456 64.27 humidity 80.0 14400 > th dose dependent rect. 11 3
460 64.30 temperature 15.0 720 > th dose independent rect. 23 16
464 64.31 temperature 20.0 30 > th dose dependent rect. 3 17
470 64.34 temperature 30.0 30 < th dose dependent rect. 2 16
494 64.44 humidity 80.0 14400 > th dose independent rect. 12 1
508 64.48 humidity 70.0 4320 < th dose independent rect. 10 1
520 64.51 precipitation 0.1 14400 < th dose independent rect. 5 6
524 64.51 precipitation 0.1 14400 < th dose dependent rect. 5 6
525 64.52 humidity 70.0 4320 > th dose independent rect. 10 1
527 64.52 temperature 20.0 720 > th dose independent rect. 3 8
529 64.52 temperature 15.0 720 > th dose dependent rect. 3 3
539 64.54 temperature 30.0 30 < th dose dependent rect. 2 14
541 64.55 wind 3.0 4320 < th dose independent rect. 6 1
544 64.56 precipitation 0.1 14400 < th dose independent rect. 5 8
546 64.56 precipitation 0.1 14400 < th dose dependent rect. 5 8
548 64.57 humidity 50.0 43200 < th dose dependent rect. 19 2
549 64.57 precipitation 0.1 14400 > th dose dependent rect. 5 6
550 64.57 precipitation 0.1 14400 > th dose dependent rect. 5 8
561 64.59 wind 3.0 14400 > th dose dependent rect. 5 1
563 64.60 precipitation 0.1 14400 > th dose independent rect. 5 6
565 64.60 precipitation 0.1 14400 > th dose independent rect. 5 8
568 64.60 temperature 20.0 30 > th dose dependent rect. 3 19
591 64.65 temperature 25.0 14400 < th dose dependent rect. 8 1
592 64.66 temperature 25.0 14400 > th dose independent rect. 13 1
602 64.68 wind 5.0 14400 < th dose independent rect. 9 8
616 64.70 humidity 70.0 4320 > th dose independent rect. 4 8
639 64.72 humidity 90.0 720 > th dose independent rect. 3 2
676 64.75 wind 5.0 14400 > th dose independent rect. 9 8
678 64.75 temperature 10.0 14400 > th dose dependent rect. 8 1
701 64.78 precipitation 0.1 14400 < th dose independent rect. 9 2
706 64.78 precipitation 0.1 14400 < th dose dependent rect. 9 2
739 64.81 humidity 50.0 720 > th dose independent rect. 3 8
743 64.81 wind 1.0 14400 < th dose dependent rect. 4 4
746 64.82 temperature 25.0 14400 > th dose independent rect. 10 4
785 64.84 temperature 15.0 14400 > th dose dependent rect. 11 1
793 64.84 wind 1.0 14400 < th dose dependent rect. 4 7
796 64.85 atmosphere 1005.0 43200 < th dose independent rect. 3 1
823 64.86 temperature 25.0 14400 < th dose independent rect. 10 4
861 64.87 temperature 20.0 30 > th dose independent rect. 3 12
863 64.87 radiation 30.0 1440 > th dose dependent rect. 16 1
888 64.88 wind 5.0 14400 > th dose independent rect. 5 1
895 64.88 temperature 30.0 14400 < th dose dependent rect. 13 1
905 64.89 temperature 25.0 14400 < th dose independent rect. 12 2
928 64.90 temperature 10.0 720 > th dose dependent rect. 3 12
954 64.92 wind 1.0 14400 > th dose independent rect. 4 9
963 64.92 wind 1.0 14400 < th dose dependent rect. 6 5
971 64.93 humidity 70.0 4320 > th dose independent sin 7 NA
973 64.93 atmosphere 1005.0 43200 > th dose independent rect. 2 2
980 64.93 temperature 20.0 30 > th dose independent rect. 3 14
995 64.94 humidity 80.0 14400 < th dose independent rect. 11 3