Os10g0552300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Root-specific protein (RCc2 protein).
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Os10g0552300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Root-specific protein (RCc2 protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 137.59 | 0.551 | 3.34 | 0.0916 | 0.216 | 4.83 | -0.0519 | 17 | -0.0106 | 8.76 | 995 | 5605 | -- | -- |
| 142.28 | 0.556 | 3.29 | -0.0672 | 0.183 | 0.503 | -0.0935 | -- | 0.00945 | 7.43 | 998.2 | 5988 | -- | -- |
| 137.44 | 0.546 | 3.37 | 0.155 | 0.237 | 7.24 | -- | 25.4 | -0.0261 | 8.96 | 994.9 | 5589 | -- | -- |
| 141.97 | 0.555 | 3.29 | -0.1 | 0.201 | 0.404 | -- | -- | -0.00723 | 8.31 | 999 | 6688 | -- | -- |
| 140.04 | 0.551 | 3.38 | 0.177 | -- | 7.32 | -- | 25.4 | -0.0233 | -- | 994.9 | 5588 | -- | -- |
| 144.58 | 0.564 | 3.3 | -0.0719 | 0.22 | -- | -0.0148 | -- | -0.0282 | 8.79 | -- | -- | -- | -- |
| 144.58 | 0.563 | 3.3 | -0.0724 | 0.22 | -- | -- | -- | -0.0282 | 8.8 | -- | -- | -- | -- |
| 144.53 | 0.56 | 3.29 | -0.0964 | -- | 0.464 | -- | -- | 0.0028 | -- | 998.7 | 6654 | -- | -- |
| 142.13 | 0.555 | 3.29 | -- | 0.215 | 0.472 | -- | -- | 0.00861 | 8.81 | 998.4 | 6290 | -- | -- |
| 147.32 | 0.567 | 3.3 | -0.0721 | -- | -- | -- | -- | -0.0265 | -- | -- | -- | -- | -- |
| 144.72 | 0.563 | 3.29 | -- | 0.219 | -- | -- | -- | -0.0201 | 8.83 | -- | -- | -- | -- |
| 144.75 | 0.56 | 3.29 | -- | -- | 0.482 | -- | -- | 0.0107 | -- | 998.4 | 6287 | -- | -- |
| 147.46 | 0.567 | 3.3 | -- | -- | -- | -- | -- | -0.0185 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 122.16 | wind | 9.0 | 10 | > th | dose independent | rect. | 18 | 1 |
| 4 | 122.16 | wind | 9.0 | 10 | > th | dose dependent | rect. | 18 | 1 |
| 13 | 124.33 | wind | 9.0 | 90 | > th | dose independent | rect. | 17 | 9 |
| 28 | 124.60 | wind | 9.0 | 90 | > th | dose dependent | rect. | 16 | 10 |
| 75 | 125.87 | wind | 9.0 | 90 | > th | dose independent | sin | 13 | NA |
| 77 | 126.57 | wind | 9.0 | 90 | > th | dose dependent | sin | 13 | NA |
| 80 | 126.94 | wind | 9.0 | 90 | > th | dose independent | rect. | 13 | 5 |
| 88 | 126.96 | wind | 9.0 | 90 | > th | dose independent | rect. | 13 | 13 |
| 150 | 127.75 | wind | 9.0 | 90 | > th | dose dependent | rect. | 13 | 5 |
| 218 | 128.71 | wind | 9.0 | 90 | < th | dose independent | sin | 14 | NA |
| 219 | 129.51 | wind | 9.0 | 90 | < th | dose independent | sin | 12 | NA |
| 228 | 132.84 | humidity | 70.0 | 90 | < th | dose independent | rect. | 16 | 1 |
| 229 | 132.93 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 232 | 133.27 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 19 | 8 |
| 239 | 133.80 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 9 | 5 |
| 247 | 133.95 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 4 | 10 |
| 259 | 134.19 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 11 | 2 |
| 267 | 134.23 | atmosphere | 995.0 | 4320 | < th | dose dependent | rect. | 14 | 1 |
| 291 | 134.37 | atmosphere | 995.0 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 426 | 134.93 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 430 | 134.96 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 22 | 5 |
| 569 | 135.42 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 14 | 2 |
| 584 | 135.51 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 12 | 7 |
| 586 | 135.52 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 12 | 9 |
| 622 | 135.57 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 626 | 135.60 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 1 | 5 |
| 651 | 135.76 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 17 | 1 |
| 653 | 135.77 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 14 | 5 |
| 657 | 135.83 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 2 | 4 |
| 723 | 136.15 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 2 | 2 |
| 724 | 136.17 | wind | 9.0 | 10 | > th | dose independent | sin | 12 | NA |
| 740 | 136.31 | temperature | 25.0 | 90 | > th | dose independent | rect. | 1 | 3 |
| 751 | 136.38 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 753 | 136.39 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 754 | 136.39 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 759 | 136.42 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 1 | 4 |
| 817 | 136.68 | temperature | 25.0 | 270 | > th | dose independent | rect. | 2 | 1 |
| 820 | 136.70 | wind | 9.0 | 270 | > th | dose independent | rect. | 13 | 1 |
| 824 | 136.70 | wind | 9.0 | 270 | > th | dose dependent | rect. | 13 | 1 |
| 843 | 136.76 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 19 | 19 |
| 848 | 136.78 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 852 | 136.82 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 8 | 11 |
| 856 | 136.88 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 8 | 13 |
| 947 | 137.47 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 17 | 1 |
| 965 | 137.53 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 973 | 137.60 | humidity | 90.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 1000 | 137.72 | wind | 9.0 | 10 | < th | dose independent | rect. | 3 | 23 |