Os02g0662000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RCc3 protein.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0662000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : RCc3 protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 430.53 | 0.975 | 3.05 | -0.311 | 0.241 | -36.3 | 1.06 | -108 | -0.378 | 6.32 | 1 | 3 | 4 | 1 |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 484.82 | 1.03 | 3.24 | -0.000843 | 0.35 | -- | -0.031 | -- | -0.429 | 5.06 | -- | -- | -- | -- |
| 484.82 | 1.03 | 3.24 | -0.000752 | 0.35 | -- | -- | -- | -0.429 | 5.09 | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 491.25 | 1.04 | 3.25 | 0.0118 | -- | -- | -- | -- | -0.42 | -- | -- | -- | -- | -- |
| 484.82 | 1.03 | 3.24 | -- | 0.35 | -- | -- | -- | -0.429 | 5.09 | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 491.25 | 1.03 | 3.25 | -- | -- | -- | -- | -- | -0.421 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 430.53 | radiation | 1 | 90 | > th | dose independent | rect. | 4 | 1 |
| 11 | 430.53 | radiation | 1 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 21 | 432.20 | temperature | 20 | 90 | < th | dose dependent | rect. | 4 | 3 |
| 22 | 432.43 | temperature | 20 | 10 | < th | dose independent | rect. | 4 | 2 |
| 25 | 433.02 | temperature | 20 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 30 | 434.73 | radiation | 1 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 43 | 437.66 | temperature | 20 | 10 | < th | dose dependent | rect. | 4 | 2 |
| 48 | 438.28 | radiation | 1 | 10 | < th | dose independent | rect. | 6 | 1 |
| 78 | 442.19 | humidity | 90 | 10 | < th | dose dependent | rect. | 3 | 3 |
| 81 | 442.40 | humidity | 80 | 10 | < th | dose independent | rect. | 1 | 6 |
| 88 | 442.58 | humidity | 80 | 10 | < th | dose dependent | rect. | 1 | 6 |
| 90 | 442.74 | wind | 5 | 720 | > th | dose independent | rect. | 1 | 5 |
| 112 | 443.03 | wind | 5 | 720 | > th | dose dependent | rect. | 1 | 5 |
| 115 | 443.26 | wind | 5 | 720 | > th | dose independent | rect. | 24 | 8 |
| 158 | 445.88 | humidity | 80 | 270 | < th | dose independent | rect. | 24 | 6 |
| 160 | 446.02 | humidity | 80 | 270 | < th | dose dependent | rect. | 24 | 6 |
| 197 | 447.90 | radiation | 1 | 30 | > th | dose dependent | rect. | 18 | 12 |
| 254 | 449.93 | radiation | 10 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 268 | 450.57 | temperature | 20 | 270 | < th | dose independent | rect. | 2 | 1 |
| 273 | 450.87 | humidity | 90 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 284 | 451.33 | humidity | 90 | 1440 | < th | dose independent | rect. | 17 | 2 |
| 296 | 451.97 | humidity | 90 | 1440 | < th | dose independent | rect. | 14 | 10 |
| 318 | 452.75 | humidity | 90 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 330 | 453.08 | humidity | 80 | 1440 | > th | dose dependent | rect. | 12 | 12 |
| 335 | 453.16 | humidity | 90 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 338 | 453.20 | humidity | 80 | 1440 | > th | dose dependent | rect. | 14 | 10 |
| 352 | 453.53 | humidity | 90 | 1440 | > th | dose independent | rect. | 14 | 10 |
| 378 | 453.82 | humidity | 90 | 1440 | < th | dose independent | sin | 18 | NA |
| 405 | 454.26 | wind | 5 | 720 | < th | dose independent | rect. | 23 | 8 |
| 407 | 454.28 | humidity | 90 | 1440 | > th | dose independent | rect. | 17 | 2 |
| 418 | 454.37 | humidity | 90 | 1440 | > th | dose independent | rect. | 11 | 13 |
| 420 | 454.38 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 2 | 4 |
| 440 | 454.63 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 5 |
| 445 | 454.67 | humidity | 80 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 489 | 454.87 | humidity | 80 | 1440 | > th | dose dependent | sin | 17 | NA |
| 509 | 454.95 | humidity | 80 | 1440 | > th | dose independent | rect. | 2 | 4 |
| 533 | 455.07 | humidity | 90 | 1440 | > th | dose independent | sin | 18 | NA |
| 587 | 455.55 | temperature | 15 | 14400 | < th | dose dependent | rect. | 7 | 3 |
| 596 | 455.61 | humidity | 90 | 1440 | < th | dose independent | rect. | 14 | 15 |
| 597 | 455.62 | wind | 9 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 598 | 455.62 | temperature | 15 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 603 | 455.62 | temperature | 10 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 604 | 455.62 | humidity | 60 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 635 | 455.62 | wind | 9 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 636 | 455.62 | temperature | 15 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 641 | 455.62 | temperature | 10 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 642 | 455.62 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 684 | 455.68 | temperature | 10 | 43200 | < th | dose independent | rect. | 8 | 13 |
| 685 | 455.68 | temperature | 10 | 43200 | < th | dose dependent | rect. | 8 | 13 |
| 729 | 455.78 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 15 |
| 736 | 455.80 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 8 |
| 760 | 455.85 | humidity | 90 | 1440 | < th | dose independent | rect. | 11 | 18 |
| 859 | 456.54 | radiation | 20 | 1440 | < th | dose dependent | rect. | 14 | 1 |