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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0551900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.05 (0.0122) R2 : 0.00594
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0424 (0.0257) R2dN8 : 0.00766 R2N8 : 0.00594
σ : 0.23
deviance : 24.22
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
22.64 0.224 3.04 0.103 0.0888 0.0664 -0.0678 0.411 -0.0319 6.16 20.05 120 -- --
23.01 0.225 3.04 0.107 0.0814 0.0997 -0.229 -- -0.0304 3.94 19.78 121 -- --
22.65 0.222 3.04 0.102 0.0879 0.0673 -- 0.413 -0.0324 5.98 20 120 -- --
23.14 0.226 3.04 0.111 0.0793 0.084 -- -- -0.0294 5.3 19.78 121 -- --
23.05 0.224 3.04 0.108 -- 0.0593 -- 0.413 -0.0258 -- 20.1 115 -- --
23.38 0.227 3.04 0.109 0.086 -- 0.139 -- -0.0303 9.21 -- -- -- --
23.43 0.227 3.04 0.114 0.0895 -- -- -- -0.0307 8.37 -- -- -- --
23.44 0.226 3.04 0.11 -- 0.0708 -- -- -0.0264 -- 17.48 56 -- --
23.46 0.227 3.05 -- 0.0817 0.0863 -- -- -0.0417 5.16 19.78 121 -- --
23.88 0.228 3.04 0.114 -- -- -- -- -0.0297 -- -- -- -- --
23.77 0.228 3.04 -- 0.09 -- -- -- -0.0433 8.28 -- -- -- --
23.74 0.228 3.05 -- -- 0.0739 -- -- -0.0385 -- 17.7 53 -- --
24.22 0.23 3.05 -- -- -- -- -- -0.0424 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 21.23 radiation 20.0 1440 < th dose dependent rect. 21 1
3 21.24 temperature 10.0 1440 > th dose independent rect. 21 1
6 21.24 temperature 30.0 1440 < th dose independent rect. 21 1
10 21.24 humidity 50.0 1440 > th dose independent rect. 21 1
16 21.24 atmosphere 995.0 1440 > th dose independent rect. 21 1
17 21.24 radiation 1.0 1440 < th dose independent rect. 21 1
37 21.24 temperature 10.0 1440 > th dose independent rect. 22 23
42 21.27 temperature 25.0 30 > th dose independent rect. 20 1
43 21.28 wind 3.0 30 > th dose independent rect. 20 1
44 21.29 atmosphere 1005.0 30 > th dose dependent rect. 20 1
45 21.30 humidity 80.0 30 > th dose independent rect. 20 1
46 21.30 radiation 40.0 14400 < th dose dependent rect. 21 1
47 21.31 temperature 20.0 30 > th dose dependent rect. 20 1
55 21.34 humidity 90.0 30 < th dose independent rect. 20 1
56 21.34 atmosphere 1005.0 30 > th dose independent rect. 20 1
57 21.34 wind 1.0 30 > th dose dependent rect. 20 1
60 21.36 wind 5.0 30 < th dose independent rect. 20 1
64 21.36 humidity 50.0 30 > th dose dependent rect. 20 1
69 21.37 temperature 10.0 30 > th dose independent rect. 20 1
71 21.37 temperature 30.0 30 < th dose independent rect. 20 1
72 21.37 humidity 50.0 30 > th dose independent rect. 20 1
76 21.37 atmosphere 1010.0 30 < th dose independent rect. 20 1
78 21.37 radiation 1.0 30 < th dose independent rect. 20 1
83 21.37 precipitation 0.1 30 < th dose independent rect. 20 1
84 21.37 temperature 10.0 30 > th dose independent rect. 21 23
86 21.37 radiation 1.0 30 < th dose dependent rect. 20 1
91 21.37 precipitation 0.1 30 < th dose dependent rect. 20 1
92 21.39 wind 9.0 30 < th dose dependent rect. 20 1
98 21.45 wind 9.0 1440 < th dose independent rect. 21 1
100 21.49 atmosphere 1015.0 30 < th dose dependent rect. 20 1
101 21.50 humidity 90.0 30 < th dose dependent rect. 20 1
104 21.55 wind 9.0 30 < th dose independent rect. 21 23
106 21.56 temperature 30.0 30 < th dose dependent rect. 20 1
156 21.93 atmosphere 1015.0 1440 < th dose independent rect. 3 1
160 22.04 radiation 10.0 43200 < th dose dependent rect. 3 1
164 22.05 wind 9.0 1440 < th dose independent rect. 3 1
165 22.05 temperature 10.0 1440 > th dose independent rect. 3 1
168 22.05 temperature 30.0 1440 < th dose independent rect. 3 1
172 22.05 humidity 50.0 1440 > th dose independent rect. 3 1
181 22.05 atmosphere 995.0 1440 > th dose independent rect. 3 1
182 22.05 radiation 1.0 1440 < th dose independent rect. 3 1
202 22.05 temperature 10.0 1440 > th dose independent rect. 4 23
205 22.05 radiation 1.0 1440 < th dose dependent rect. 3 1
218 22.07 temperature 10.0 1440 > th dose independent rect. 4 8
221 22.07 atmosphere 995.0 1440 > th dose independent rect. 4 8
222 22.07 temperature 10.0 1440 > th dose independent rect. 12 16
225 22.08 temperature 10.0 10 > th dose dependent rect. 20 8
228 22.10 radiation 40.0 43200 < th dose dependent rect. 21 7
232 22.14 temperature 10.0 1440 > th dose independent rect. 21 7
235 22.14 temperature 30.0 1440 < th dose independent rect. 21 7
239 22.14 humidity 50.0 1440 > th dose independent rect. 21 7
245 22.14 atmosphere 995.0 1440 > th dose independent rect. 21 7
246 22.14 radiation 1.0 1440 < th dose independent rect. 21 7
266 22.14 temperature 10.0 1440 > th dose independent rect. 4 17
270 22.14 atmosphere 995.0 30 > th dose independent rect. 21 23
271 22.14 radiation 1.0 1440 < th dose dependent rect. 21 7
276 22.15 radiation 40.0 10 < th dose independent rect. 4 7
290 22.20 radiation 20.0 10 < th dose dependent rect. 21 23
291 22.21 atmosphere 995.0 10 > th dose independent rect. 4 16
293 22.22 temperature 10.0 1440 > th dose independent rect. 4 6
296 22.22 atmosphere 995.0 1440 > th dose independent rect. 4 6
297 22.22 atmosphere 1015.0 1440 < th dose independent rect. 4 6
298 22.22 temperature 10.0 1440 > th dose independent rect. 10 18
302 22.23 radiation 30.0 90 < th dose independent rect. 3 8
304 22.24 atmosphere 1010.0 10 < th dose independent rect. 20 8
309 22.26 wind 7.0 10 < th dose independent rect. 4 16
311 22.26 radiation 40.0 90 < th dose dependent rect. 3 8
313 22.27 wind 9.0 1440 < th dose independent rect. 21 7
316 22.28 wind 5.0 10 < th dose independent rect. 20 8
317 22.28 wind 9.0 90 < th dose dependent rect. 3 8
320 22.30 atmosphere 1010.0 90 < th dose independent rect. 3 8
322 22.30 temperature 20.0 90 > th dose dependent rect. 1 2
323 22.30 radiation 40.0 10 < th dose dependent rect. 4 7
325 22.31 atmosphere 1000.0 10 > th dose independent rect. 14 21
327 22.31 radiation 40.0 10 < th dose independent rect. 14 21
329 22.31 radiation 10.0 10 < th dose independent rect. 21 23
336 22.32 wind 9.0 720 < th dose independent rect. 17 16
343 22.33 radiation 20.0 90 < th dose independent rect. 3 22
348 22.34 wind 7.0 90 < th dose independent rect. 3 8
350 22.34 temperature 15.0 10 > th dose independent rect. 20 8
353 22.34 atmosphere 1010.0 10 < th dose independent rect. 4 16
354 22.34 atmosphere 1015.0 90 < th dose independent rect. 11 16
355 22.34 radiation 40.0 90 < th dose independent rect. 11 16
356 22.34 humidity 50.0 90 > th dose dependent rect. 3 8
362 22.35 radiation 30.0 10 < th dose independent rect. 16 19
366 22.36 atmosphere 1000.0 10 > th dose independent rect. 4 7
369 22.36 temperature 30.0 10 < th dose independent rect. 20 8
370 22.36 humidity 50.0 10 > th dose independent rect. 20 8
373 22.36 atmosphere 995.0 10 > th dose independent rect. 20 8
374 22.36 radiation 1.0 10 < th dose independent rect. 20 8
379 22.36 precipitation 0.1 10 < th dose independent rect. 20 8
380 22.36 temperature 10.0 10 > th dose independent rect. 4 16
384 22.36 precipitation 0.1 10 < th dose independent rect. 4 16
387 22.36 radiation 1.0 10 < th dose dependent rect. 20 8
392 22.36 precipitation 0.1 10 < th dose dependent rect. 20 8
393 22.36 wind 9.0 10 < th dose dependent rect. 4 16
394 22.36 precipitation 0.1 10 < th dose dependent rect. 4 16
400 22.38 wind 9.0 1440 < th dose independent rect. 4 5
404 22.38 humidity 50.0 1440 > th dose independent rect. 4 5
408 22.38 temperature 15.0 90 > th dose independent rect. 3 8
414 22.38 atmosphere 1005.0 10 > th dose dependent rect. 2 2
415 22.38 humidity 50.0 10 > th dose dependent rect. 4 7
416 22.38 wind 9.0 10 < th dose dependent rect. 20 8
417 22.38 temperature 10.0 90 > th dose dependent rect. 3 8
420 22.38 temperature 10.0 90 > th dose dependent rect. 9 18
421 22.38 radiation 40.0 10 < th dose dependent rect. 14 21
422 22.38 radiation 40.0 90 < th dose dependent rect. 3 22
423 22.38 radiation 20.0 10 < th dose dependent rect. 4 22
426 22.39 humidity 50.0 90 > th dose independent rect. 3 8
429 22.39 precipitation 0.1 90 < th dose independent rect. 11 16
430 22.39 atmosphere 1000.0 30 > th dose independent rect. 16 19
436 22.39 precipitation 0.1 90 < th dose dependent rect. 11 16
440 22.40 temperature 30.0 10 < th dose independent rect. 4 16
442 22.40 radiation 10.0 10 < th dose independent rect. 4 22
449 22.41 atmosphere 995.0 90 > th dose independent rect. 3 8
452 22.41 temperature 10.0 90 > th dose independent rect. 11 16
453 22.41 atmosphere 1015.0 10 < th dose independent rect. 11 17
456 22.41 atmosphere 995.0 10 > th dose dependent rect. 4 7
462 22.41 radiation 40.0 10 < th dose dependent rect. 16 19
464 22.42 humidity 90.0 90 < th dose independent rect. 2 4
465 22.42 temperature 15.0 720 > th dose independent rect. 9 8
511 22.43 radiation 30.0 30 < th dose independent rect. 12 1
512 22.43 humidity 60.0 10 > th dose independent rect. 4 7
517 22.43 wind 9.0 90 < th dose independent rect. 11 16
520 22.43 humidity 90.0 270 < th dose dependent rect. 3 1
529 22.43 humidity 50.0 10 > th dose dependent rect. 20 8
530 22.43 temperature 10.0 10 > th dose dependent rect. 9 19
535 22.44 temperature 30.0 10 < th dose independent rect. 4 7
543 22.44 atmosphere 1015.0 720 < th dose independent rect. 9 8
550 22.44 precipitation 0.1 90 < th dose independent rect. 3 8
553 22.44 temperature 10.0 720 > th dose independent rect. 17 16
558 22.44 temperature 25.0 720 > th dose dependent rect. 6 2
559 22.44 wind 9.0 10 < th dose dependent rect. 4 7
566 22.44 precipitation 0.1 90 < th dose dependent rect. 3 8
573 22.45 radiation 20.0 90 < th dose independent rect. 3 10
585 22.45 temperature 10.0 10 > th dose dependent rect. 4 7
587 22.45 radiation 30.0 90 < th dose dependent rect. 3 10
589 22.45 temperature 10.0 10 > th dose dependent rect. 4 16
630 22.46 atmosphere 995.0 10 > th dose independent rect. 14 6
635 22.46 wind 7.0 720 < th dose independent rect. 19 8
637 22.46 temperature 30.0 90 < th dose independent rect. 3 8
674 22.46 temperature 10.0 90 > th dose dependent rect. 7 20
675 22.46 humidity 80.0 90 > th dose dependent rect. 3 21
676 22.47 radiation 40.0 270 < th dose independent rect. 11 1
693 22.47 radiation 20.0 10 < th dose dependent rect. 4 16
697 22.48 wind 3.0 14400 > th dose independent rect. 11 1
698 22.48 wind 3.0 14400 < th dose independent rect. 11 1
699 22.48 humidity 90.0 270 < th dose independent rect. 3 1
700 22.48 humidity 80.0 270 < th dose independent rect. 24 3
704 22.48 wind 5.0 10 < th dose independent rect. 4 7
710 22.48 temperature 15.0 90 > th dose independent rect. 9 18
714 22.48 humidity 80.0 270 < th dose dependent rect. 24 3
723 22.48 radiation 30.0 90 < th dose dependent rect. 3 12
726 22.48 temperature 10.0 10 > th dose dependent rect. 11 17
730 22.49 wind 7.0 720 > th dose independent rect. 22 1
731 22.49 atmosphere 1005.0 90 > th dose independent rect. 2 1
741 22.49 wind 9.0 10 < th dose independent rect. 4 7
742 22.49 temperature 10.0 10 > th dose independent rect. 4 7
746 22.49 atmosphere 1015.0 10 < th dose independent rect. 4 7
749 22.49 radiation 20.0 90 < th dose independent rect. 3 12
750 22.49 temperature 10.0 10 > th dose independent rect. 11 17
751 22.49 precipitation 0.1 10 < th dose independent rect. 11 17
754 22.49 precipitation 0.1 90 < th dose independent rect. 9 18
757 22.49 atmosphere 1000.0 10 > th dose independent rect. 4 22
761 22.49 wind 7.0 720 > th dose dependent rect. 22 1
779 22.49 precipitation 0.1 10 < th dose dependent rect. 11 17
780 22.49 precipitation 0.1 90 < th dose dependent rect. 9 18
784 22.50 wind 5.0 720 < th dose independent rect. 13 2
786 22.50 wind 9.0 1440 < th dose independent rect. 4 3
787 22.50 temperature 10.0 1440 > th dose independent rect. 4 3
790 22.50 temperature 30.0 1440 < th dose independent rect. 4 3
794 22.50 humidity 50.0 1440 > th dose independent rect. 4 3
799 22.50 atmosphere 995.0 1440 > th dose independent rect. 4 3
800 22.50 atmosphere 1015.0 1440 < th dose independent rect. 4 3
801 22.50 radiation 40.0 1440 < th dose independent rect. 4 3
805 22.50 radiation 40.0 30 < th dose independent rect. 11 3
808 22.50 precipitation 0.1 10 < th dose independent rect. 4 7
812 22.50 wind 9.0 720 < th dose independent rect. 3 16
816 22.50 atmosphere 1015.0 720 < th dose independent rect. 3 16
817 22.50 radiation 10.0 10 < th dose independent rect. 4 16
822 22.50 atmosphere 1015.0 90 < th dose independent rect. 9 18
824 22.50 temperature 10.0 1440 > th dose independent rect. 7 21
837 22.50 precipitation 0.1 10 < th dose dependent rect. 4 7
859 22.51 wind 5.0 90 < th dose independent rect. 3 6
860 22.51 atmosphere 1010.0 90 < th dose independent rect. 3 6
879 22.51 humidity 80.0 90 > th dose independent rect. 3 12
882 22.51 radiation 40.0 720 < th dose independent rect. 17 16
884 22.51 atmosphere 1015.0 10 < th dose independent rect. 20 18
894 22.51 precipitation 0.1 270 < th dose independent rect. 5 22
895 22.51 atmosphere 1000.0 90 > th dose independent rect. 3 23
898 22.51 humidity 90.0 1440 < th dose dependent rect. 3 1
903 22.51 wind 1.0 10 > th dose dependent rect. 11 3
921 22.51 precipitation 0.1 270 < th dose dependent rect. 5 22
922 22.52 wind 3.0 90 < th dose independent rect. 1 2
927 22.52 temperature 10.0 90 > th dose independent rect. 3 6
929 22.52 humidity 50.0 90 > th dose independent rect. 3 6
953 22.52 wind 9.0 720 < th dose independent rect. 15 16
955 22.52 temperature 15.0 720 > th dose independent rect. 15 16
958 22.52 humidity 90.0 90 > th dose independent rect. 3 21
963 22.52 temperature 20.0 10 > th dose dependent rect. 1 3
968 22.52 atmosphere 995.0 10 > th dose dependent rect. 14 6
981 22.52 temperature 10.0 90 > th dose dependent rect. 11 16
987 22.52 temperature 10.0 10 > th dose dependent rect. 6 22
993 22.53 precipitation 0.1 90 < th dose independent rect. 3 6
994 22.53 humidity 80.0 90 > th dose independent rect. 3 7
995 22.53 temperature 15.0 720 > th dose independent rect. 7 8