Os10g0551800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Root-specific protein (RCc2 protein).
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Os10g0551800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Root-specific protein (RCc2 protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 471.29 | 1.02 | 3.47 | 0.784 | 0.227 | -6 | 0.942 | -12.8 | -0.154 | 4.77 | 9.101 | 63 | -- | -- |
| 494.23 | 1.04 | 3.4 | 0.828 | 0.254 | -4.2 | 1.19 | -- | -0.0553 | 3.44 | 9.5 | 47 | -- | -- |
| 473.53 | 1.01 | 3.48 | 0.788 | 0.239 | -6.04 | -- | -12.5 | -0.156 | 4.82 | 9.1 | 63 | -- | -- |
| 478.16 | 1.02 | 3.42 | 0.615 | 0.187 | -5.67 | -- | -- | -0.167 | 4.73 | 10.4 | 52 | -- | -- |
| 476.46 | 1.02 | 3.48 | 0.786 | -- | -5.86 | -- | -12.3 | -0.155 | -- | 9.1 | 63 | -- | -- |
| 511.93 | 1.06 | 3.43 | 0.483 | 0.127 | -- | 1.32 | -- | -0.215 | 5.53 | -- | -- | -- | -- |
| 516.18 | 1.06 | 3.43 | 0.489 | 0.14 | -- | -- | -- | -0.22 | 6.49 | -- | -- | -- | -- |
| 478.84 | 1.02 | 3.42 | 0.61 | -- | -5.21 | -- | -- | -0.172 | -- | 10.4 | 47 | -- | -- |
| 487.46 | 1.03 | 3.43 | -- | 0.218 | -5.22 | -- | -- | -0.243 | 5.65 | 10.42 | 64 | -- | -- |
| 517.21 | 1.06 | 3.43 | 0.493 | -- | -- | -- | -- | -0.217 | -- | -- | -- | -- | -- |
| 522.49 | 1.07 | 3.44 | -- | 0.147 | -- | -- | -- | -0.275 | 6.31 | -- | -- | -- | -- |
| 488.63 | 1.03 | 3.44 | -- | -- | -4.95 | -- | -- | -0.24 | -- | 10.41 | 49 | -- | -- |
| 523.61 | 1.07 | 3.44 | -- | -- | -- | -- | -- | -0.272 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 466.74 | wind | 9 | 90 | > th | dose dependent | rect. | 20 | 20 |
| 8 | 470.64 | wind | 9 | 90 | > th | dose independent | rect. | 20 | 20 |
| 13 | 471.16 | wind | 9 | 90 | > th | dose dependent | rect. | 10 | 6 |
| 16 | 471.62 | wind | 9 | 90 | > th | dose dependent | rect. | 1 | 15 |
| 27 | 472.00 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 28 | 472.63 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 13 |
| 30 | 472.92 | humidity | 70 | 10 | < th | dose independent | rect. | 16 | 17 |
| 33 | 473.25 | humidity | 80 | 90 | < th | dose dependent | rect. | 20 | 12 |
| 34 | 473.39 | humidity | 70 | 90 | < th | dose independent | rect. | 18 | 14 |
| 37 | 473.54 | humidity | 70 | 10 | < th | dose independent | rect. | 18 | 14 |
| 41 | 473.75 | humidity | 70 | 90 | < th | dose dependent | rect. | 18 | 14 |
| 47 | 474.03 | radiation | 30 | 10 | > th | dose dependent | rect. | 8 | 1 |
| 55 | 474.29 | wind | 9 | 90 | > th | dose independent | rect. | 11 | 5 |
| 74 | 474.39 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 100 | 474.43 | humidity | 70 | 10 | < th | dose dependent | rect. | 18 | 14 |
| 114 | 474.55 | humidity | 80 | 90 | < th | dose independent | rect. | 5 | 2 |
| 130 | 474.66 | wind | 9 | 90 | > th | dose independent | rect. | 1 | 15 |
| 133 | 474.70 | humidity | 80 | 90 | < th | dose dependent | rect. | 24 | 7 |
| 150 | 474.89 | humidity | 70 | 10 | < th | dose independent | rect. | 7 | 1 |
| 210 | 474.89 | humidity | 70 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 314 | 475.11 | radiation | 30 | 30 | > th | dose independent | rect. | 7 | 2 |
| 352 | 475.41 | wind | 9 | 10 | > th | dose independent | rect. | 15 | 1 |
| 360 | 475.41 | wind | 9 | 10 | > th | dose dependent | rect. | 15 | 1 |
| 409 | 475.65 | humidity | 70 | 1440 | < th | dose independent | rect. | 19 | 13 |
| 482 | 476.10 | humidity | 80 | 1440 | < th | dose dependent | rect. | 19 | 13 |
| 618 | 477.57 | humidity | 80 | 1440 | < th | dose dependent | rect. | 19 | 3 |
| 642 | 478.31 | humidity | 80 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 659 | 478.53 | wind | 9 | 90 | > th | dose dependent | rect. | 14 | 23 |
| 666 | 478.60 | wind | 7 | 720 | > th | dose dependent | rect. | 9 | 3 |
| 667 | 478.62 | wind | 9 | 90 | > th | dose dependent | rect. | 14 | 21 |
| 695 | 478.89 | humidity | 70 | 10 | < th | dose independent | sin | 11 | NA |
| 700 | 478.95 | wind | 9 | 90 | > th | dose dependent | rect. | 10 | 16 |
| 717 | 479.05 | wind | 9 | 90 | > th | dose dependent | rect. | 10 | 13 |
| 720 | 479.06 | wind | 9 | 90 | > th | dose dependent | sin | 23 | NA |
| 723 | 479.13 | wind | 9 | 90 | > th | dose independent | rect. | 14 | 21 |
| 740 | 479.35 | wind | 9 | 90 | > th | dose dependent | no | NA | NA |
| 756 | 479.35 | wind | 9 | 90 | > th | dose dependent | rect. | 1 | 22 |
| 804 | 479.48 | wind | 9 | 270 | > th | dose independent | sin | 5 | NA |
| 844 | 480.12 | wind | 9 | 720 | > th | dose independent | rect. | 9 | 3 |
| 941 | 480.89 | wind | 7 | 10 | > th | dose independent | rect. | 21 | 15 |
| 966 | 480.95 | humidity | 70 | 10 | > th | dose independent | sin | 11 | NA |
| 967 | 480.97 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 976 | 481.03 | wind | 7 | 270 | > th | dose dependent | sin | 3 | NA |
| 979 | 481.08 | wind | 9 | 90 | < th | dose independent | no | NA | NA |
| 987 | 481.12 | wind | 9 | 90 | > th | dose independent | rect. | 10 | 16 |