BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0551800 Os10g0551800|L27209
(146 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0551800 Root-specific protein (RCc2 protein) 130 5e-31
Os10g0349800 94 5e-20
Os10g0552200 Plant lipid transfer/seed storage/trypsin-alph... 91 2e-19
Os10g0349400 91 2e-19
Os10g0551900 Plant lipid transfer/seed storage/trypsin-alph... 91 2e-19
Os10g0552300 Similar to Root-specific protein (RCc2 protein) 90 5e-19
Os10g0552100 Similar to NT16 polypeptide 87 6e-18
Os10g0349300 Similar to Root-specific protein (RCc2 protein) 86 7e-18
Os10g0349900 Similar to NT16 polypeptide 82 1e-16
Os03g0103300 Plant lipid transfer/seed storage/trypsin-alph... 67 5e-12
Os03g0103200 Similar to Physical impedance induced protein 67 7e-12
Os10g0552700 Similar to Tumor-related protein (Fragment) 66 7e-12
Os10g0552600 Similar to Tfm5 protein 65 1e-11
Os10g0552800 Similar to Tfm5 protein 64 5e-11
>Os10g0551800 Root-specific protein (RCc2 protein)
Length = 146
Score = 130 bits (326), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 75/125 (60%), Positives = 75/125 (60%)
Query: 22 HGCEPHCSGGGXXXXXXXXXXXXXXXXSFXXXXXXXXXXXXXRCPIDALKLRVCANVLNG 81
HGCEPHCSGGG SF RCPIDALKLRVCANVLNG
Sbjct: 22 HGCEPHCSGGGAPAVVIPTPTVVVPLPSFGGAHGGYGGYGHGRCPIDALKLRVCANVLNG 81
Query: 82 ALGVNVGHGPYXXXXXXXXXXXXXXXXXXXXXVKANVLGVNLNVPVELKLILNKCGKTCP 141
ALGVNVGHGPY VKANVLGVNLNVPVELKLILNKCGKTCP
Sbjct: 82 ALGVNVGHGPYDCCPLLAGLADADAAVCLCTAVKANVLGVNLNVPVELKLILNKCGKTCP 141
Query: 142 SDFTC 146
SDFTC
Sbjct: 142 SDFTC 146
>Os10g0349800
Length = 130
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 55/83 (66%)
Query: 64 RCPIDALKLRVCANVLNGALGVNVGHGPYXXXXXXXXXXXXXXXXXXXXXVKANVLGVNL 123
RCP+DALKLRVCANVL G + V +GHGP VKANVLG+ +
Sbjct: 48 RCPMDALKLRVCANVLKGLVDVEIGHGPDDCCSLLSGIADIDAAVCLCTAVKANVLGIRV 107
Query: 124 NVPVELKLILNKCGKTCPSDFTC 146
N+PV+L LILNKCGKTCPSDFTC
Sbjct: 108 NLPVDLSLILNKCGKTCPSDFTC 130
>Os10g0552200 Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor
domain containing protein
Length = 131
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 63/125 (50%), Gaps = 16/125 (12%)
Query: 22 HGCEPHCSGGGXXXXXXXXXXXXXXXXSFXXXXXXXXXXXXXRCPIDALKLRVCANVLNG 81
HGCEP+CSGGG CPIDALKLRVCANVLNG
Sbjct: 23 HGCEPNCSGGG----------------PVIPTPTTPSYDRHGHCPIDALKLRVCANVLNG 66
Query: 82 ALGVNVGHGPYXXXXXXXXXXXXXXXXXXXXXVKANVLGVNLNVPVELKLILNKCGKTCP 141
+GV +G GP VKANVLG+NLN+PV+L LILNKC K P
Sbjct: 67 LVGVKIGAGPNECCSLLQGIADLDAAVCLCTAVKANVLGINLNLPVDLSLILNKCSKIYP 126
Query: 142 SDFTC 146
S FTC
Sbjct: 127 SGFTC 131
>Os10g0349400
Length = 137
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 55/83 (66%)
Query: 64 RCPIDALKLRVCANVLNGALGVNVGHGPYXXXXXXXXXXXXXXXXXXXXXVKANVLGVNL 123
RCPI+ALKLRVCANVLN + V +GHGP VKANVLG+ +
Sbjct: 55 RCPINALKLRVCANVLNRLVDVKIGHGPDDCCSLLSGIADLDAAVCLCTAVKANVLGIRV 114
Query: 124 NVPVELKLILNKCGKTCPSDFTC 146
N+PV+L LILNKCGK+CPSDFTC
Sbjct: 115 NLPVDLSLILNKCGKSCPSDFTC 137
>Os10g0551900 Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor
domain containing protein
Length = 142
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 63/126 (50%), Gaps = 6/126 (4%)
Query: 22 HGCEPHCSGGGXXXXXXXXXXXXXXXXSFXXXXXXXXXXXXXRCPIDALKLRVCANVLNG 81
HGC P+C GG RCPIDALKLRVCANVLNG
Sbjct: 22 HGCAPYCPGGAPPVIPTPPVVVPTPPAHHHHGGHGHG-----RCPIDALKLRVCANVLNG 76
Query: 82 ALGVNVGHGPYXXXXXXXXXXXXXXXXXXXXXVKANVLG-VNLNVPVELKLILNKCGKTC 140
+GV +G GP +KANVLG +NLN+PV+L LILN CGK C
Sbjct: 77 LVGVKIGAGPDDCCPLLSGLADLDAAVCLCTAIKANVLGIINLNIPVDLSLILNNCGKIC 136
Query: 141 PSDFTC 146
PSDFTC
Sbjct: 137 PSDFTC 142
>Os10g0552300 Similar to Root-specific protein (RCc2 protein)
Length = 136
Score = 90.1 bits (222), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 62/125 (49%), Gaps = 11/125 (8%)
Query: 22 HGCEPHCSGGGXXXXXXXXXXXXXXXXSFXXXXXXXXXXXXXRCPIDALKLRVCANVLNG 81
HGCEP+C GG RCPIDALKLRVC NVLNG
Sbjct: 23 HGCEPYCGHGGPVIPT-----------PPVVVPTPPSYHRHGRCPIDALKLRVCTNVLNG 71
Query: 82 ALGVNVGHGPYXXXXXXXXXXXXXXXXXXXXXVKANVLGVNLNVPVELKLILNKCGKTCP 141
+GV +G GP VKANVLG+ LN+ V+L LILNKCGK CP
Sbjct: 72 LVGVKIGAGPDDCCPLLSGLADLDAAVCLCTAVKANVLGMKLNLAVDLSLILNKCGKICP 131
Query: 142 SDFTC 146
SDFTC
Sbjct: 132 SDFTC 136
>Os10g0552100 Similar to NT16 polypeptide
Length = 131
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 61/125 (48%), Gaps = 17/125 (13%)
Query: 22 HGCEPHCSGGGXXXXXXXXXXXXXXXXSFXXXXXXXXXXXXXRCPIDALKLRVCANVLNG 81
GCEP+CSGG CPIDALKLRVCANVLNG
Sbjct: 24 RGCEPNCSGG-----------------PVIPTPTTPSYDRHGHCPIDALKLRVCANVLNG 66
Query: 82 ALGVNVGHGPYXXXXXXXXXXXXXXXXXXXXXVKANVLGVNLNVPVELKLILNKCGKTCP 141
+GV +G GP VKANVLG+NLN+PV+L LILNKC K P
Sbjct: 67 LVGVKIGAGPNECCSLLQGIADLDAAVCLCTAVKANVLGINLNLPVDLSLILNKCNKIYP 126
Query: 142 SDFTC 146
S FTC
Sbjct: 127 SGFTC 131
>Os10g0349300 Similar to Root-specific protein (RCc2 protein)
Length = 137
Score = 86.3 bits (212), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 53/83 (63%)
Query: 64 RCPIDALKLRVCANVLNGALGVNVGHGPYXXXXXXXXXXXXXXXXXXXXXVKANVLGVNL 123
RCPI+ LKLRVCANVLNG + +GHG VKANVLG+ +
Sbjct: 55 RCPINTLKLRVCANVLNGLVDAKIGHGTDDCCSLLSGIADLDAAVCLCTAVKANVLGIRV 114
Query: 124 NVPVELKLILNKCGKTCPSDFTC 146
N+PV+L ++LNKCGKTCPSDFTC
Sbjct: 115 NLPVDLSIMLNKCGKTCPSDFTC 137
>Os10g0349900 Similar to NT16 polypeptide
Length = 126
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 64 RCPIDALKLRVCANVLNGALGVNVGHGPYXXXXXXXXXXXXXXXXXXXXXVKANVLG-VN 122
RCPIDALKLRVCAN+LNG +GV +G GP +KANVLG +N
Sbjct: 43 RCPIDALKLRVCANLLNGLIGVKIGRGPDDCCPLLAGIADLDAAVCLCTALKANVLGLIN 102
Query: 123 LNVPVELKLILNKCGKTCPSDFTC 146
LN+PV+L +ILNKCGK PS FTC
Sbjct: 103 LNLPVDLSIILNKCGKNYPSGFTC 126
>Os03g0103300 Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor
domain containing protein
Length = 184
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 64 RCPIDALKLRVCANVLNGALGVNVGHGPYXXXXXXXX-XXXXXXXXXXXXXVKANVLGVN 122
RCPID LKL VCANVLNG + V +G P ++AN+LG+N
Sbjct: 99 RCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRANILGIN 158
Query: 123 LNVPVELKLILNKCGKTCPSDFTC 146
LN+P+ L L++N CG++ PS F C
Sbjct: 159 LNLPINLSLLVNYCGRSVPSGFQC 182
>Os03g0103200 Similar to Physical impedance induced protein
Length = 141
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 64 RCPIDALKLRVCANVLNGALGVNVG-HGPYXXXXXXXXXXXXXXXXXXXXXVKANVLGVN 122
+CPIDALKL VCANVLN L + VG +KANVLG+N
Sbjct: 56 KCPIDALKLGVCANVLN-LLKLKVGVPASEECCPLLGGLVDLDAAVCLCTAIKANVLGIN 114
Query: 123 LNVPVELKLILNKCGKTCPSDFTC 146
+NVPV+L L+LN C KTCPSDF+C
Sbjct: 115 INVPVDLVLLLNYCHKTCPSDFSC 138
>Os10g0552700 Similar to Tumor-related protein (Fragment)
Length = 124
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 65 CPIDALKLRVCANVLNGALGVNVGH-GPYXXXXXXXX-XXXXXXXXXXXXXVKANVLGVN 122
CP DALKLRVCANVL G + VG PY VKANVLG+
Sbjct: 40 CPRDALKLRVCANVL-GLVKAKVGAVAPYEPCCSLLDGLVDLDAAVCLCTAVKANVLGIK 98
Query: 123 LNVPVELKLILNKCGKTCPSDFTC 146
L++PV+L LILN CGK CPSDF C
Sbjct: 99 LDLPVDLSLILNNCGKICPSDFKC 122
>Os10g0552600 Similar to Tfm5 protein
Length = 133
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 64 RCPIDALKLRVCANVLNGALGVNVGH-GPYXXXXXXXX-XXXXXXXXXXXXXVKANVLGV 121
CP DALKL VCANVL G + +G PY +KANVLG+
Sbjct: 49 SCPRDALKLHVCANVL-GLVKAKIGAVAPYEPCCSLLDGLVDLDAAVCLCTAIKANVLGL 107
Query: 122 NLNVPVELKLILNKCGKTCPSDFTC 146
NLN+P++L LILN CGK CPSD+ C
Sbjct: 108 NLNIPIDLSLILNNCGKICPSDYQC 132
>Os10g0552800 Similar to Tfm5 protein
Length = 132
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 64 RCPIDALKLRVCANVLNGALGVNVGH-GPYXXXXXXXX-XXXXXXXXXXXXXVKANVLGV 121
CP DALKL VCANVL G + VG PY +KANVLG+
Sbjct: 47 SCPRDALKLHVCANVL-GLVKAKVGAVSPYEPCCSLLDGLVDLDAAVCLCTAIKANVLGI 105
Query: 122 NLNVPVELKLILNKCGKTCPSDFTC 146
LN+P++L LILN CGK CPSD+ C
Sbjct: 106 KLNLPIDLSLILNNCGKICPSDYQC 130
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.143 0.480
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,712,307
Number of extensions: 45182
Number of successful extensions: 155
Number of sequences better than 1.0e-10: 17
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 17
Length of query: 146
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 55
Effective length of database: 12,284,327
Effective search space: 675637985
Effective search space used: 675637985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 151 (62.8 bits)