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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0552200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.09 (0.0204) R2 : 0.00306
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0507 (0.0429) R2dN8 : 0.00395 R2N8 : 0.00306
σ : 0.384
deviance : 67.58
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
63.89 0.376 3.07 0.203 0.328 -0.315 -1.16 1.22 0.1 11.3 0.1687 112 -- --
65.76 0.378 3.07 0.155 0.341 -0.308 0.0312 -- 0.136 11.5 0.1452 80 -- --
65.59 0.38 3.08 0.113 0.172 -0.108 -- 0.265 0.0605 8.11 0.2299 116 -- --
65.52 0.377 3.09 0.0911 0.187 -0.162 -- -- 0.0369 9.6 0.04331 94 -- --
66.22 0.379 3.08 0.11 -- -0.0931 -- 0.288 0.0516 -- 0.05 135 -- --
66.21 0.381 3.09 0.101 0.138 -- -0.177 -- 0.0581 4.71 -- -- -- --
66.28 0.381 3.09 0.102 0.138 -- -- -- 0.059 4.97 -- -- -- --
66.62 0.38 3.09 0.0872 -- -0.077 -- -- 0.0577 -- 6.896e-06 151 -- --
65.66 0.377 3.08 -- 0.241 -0.236 -- -- 0.0706 10.8 0.04048 116 -- --
67.28 0.383 3.09 0.107 -- -- -- -- 0.0626 -- -- -- -- --
66.56 0.382 3.09 -- 0.14 -- -- -- 0.0477 4.95 -- -- -- --
66.4 0.38 3.09 -- -- -0.168 -- -- 0.0521 -- 5.593 605 -- --
67.58 0.384 3.09 -- -- -- -- -- 0.0507 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 60.43 atmosphere 1005.0 10 > th dose dependent rect. 2 3
2 60.46 temperature 25.0 90 > th dose dependent rect. 2 2
4 60.55 temperature 25.0 90 > th dose independent rect. 1 3
5 60.67 temperature 25.0 90 > th dose dependent rect. 1 4
6 60.81 temperature 25.0 270 > th dose independent rect. 2 1
23 61.71 atmosphere 1005.0 90 > th dose dependent rect. 2 1
27 61.90 radiation 1.0 43200 < th dose dependent rect. 3 1
34 62.08 atmosphere 1000.0 30 > th dose independent rect. 3 23
41 62.11 wind 9.0 1440 < th dose independent rect. 3 1
42 62.11 temperature 10.0 1440 > th dose independent rect. 3 1
45 62.11 temperature 30.0 1440 < th dose independent rect. 3 1
49 62.11 humidity 50.0 1440 > th dose independent rect. 3 1
58 62.11 atmosphere 995.0 1440 > th dose independent rect. 3 1
59 62.11 radiation 1.0 1440 < th dose independent rect. 3 1
79 62.11 temperature 10.0 1440 > th dose independent rect. 4 23
102 62.17 atmosphere 1000.0 30 > th dose independent rect. 2 1
106 62.18 wind 3.0 30 < th dose independent rect. 2 1
109 62.19 wind 5.0 30 < th dose dependent rect. 2 1
113 62.20 temperature 10.0 30 > th dose independent rect. 2 1
115 62.20 temperature 30.0 30 < th dose independent rect. 2 1
116 62.20 humidity 50.0 30 > th dose independent rect. 2 1
119 62.20 humidity 90.0 30 > th dose independent rect. 2 1
121 62.20 atmosphere 1010.0 30 < th dose independent rect. 2 1
123 62.20 radiation 1.0 30 < th dose independent rect. 2 1
128 62.20 precipitation 0.1 30 < th dose independent rect. 2 1
129 62.20 temperature 10.0 30 > th dose independent rect. 3 23
131 62.20 humidity 50.0 30 > th dose dependent rect. 2 1
134 62.20 radiation 1.0 30 < th dose dependent rect. 2 1
139 62.20 precipitation 0.1 30 < th dose dependent rect. 2 1
150 62.26 atmosphere 1015.0 30 < th dose dependent rect. 2 1
151 62.28 wind 1.0 30 > th dose independent rect. 2 1
155 62.31 temperature 30.0 30 < th dose dependent rect. 2 1
166 62.39 atmosphere 1005.0 30 > th dose independent rect. 2 3
169 62.41 precipitation 0.1 30 < th dose independent rect. 3 23
170 62.41 precipitation 0.1 30 < th dose dependent rect. 3 23
221 62.61 wind 5.0 30 < th dose dependent rect. 2 3
228 62.69 wind 9.0 30 < th dose independent rect. 3 23
241 62.77 wind 3.0 30 < th dose independent rect. 2 3
246 62.83 atmosphere 1000.0 30 > th dose independent rect. 5 21
274 63.11 humidity 50.0 30 > th dose independent rect. 3 23
277 63.13 humidity 90.0 30 < th dose independent rect. 22 1
280 63.15 wind 9.0 1440 < th dose independent rect. 23 1
281 63.15 temperature 10.0 1440 > th dose independent rect. 23 1
284 63.15 temperature 30.0 1440 < th dose independent rect. 23 1
288 63.15 humidity 50.0 1440 > th dose independent rect. 23 1
298 63.15 atmosphere 995.0 1440 > th dose independent rect. 23 1
299 63.15 radiation 1.0 1440 < th dose independent rect. 23 1
319 63.15 temperature 10.0 1440 > th dose independent rect. 24 23
322 63.15 humidity 90.0 30 < th dose dependent rect. 22 1
323 63.15 radiation 1.0 1440 < th dose dependent rect. 23 1
330 63.16 temperature 25.0 30 > th dose dependent rect. 22 1
331 63.16 atmosphere 1005.0 30 > th dose dependent rect. 22 1
332 63.18 atmosphere 1005.0 30 > th dose independent rect. 22 1
336 63.19 temperature 10.0 30 > th dose dependent rect. 22 1
338 63.20 wind 1.0 30 > th dose independent rect. 22 1
340 63.20 temperature 25.0 30 > th dose independent rect. 22 1
346 63.21 precipitation 0.1 30 < th dose independent rect. 22 1
347 63.21 precipitation 0.1 30 < th dose independent rect. 2 3
348 63.21 radiation 1.0 10 < th dose independent rect. 2 12
350 63.21 precipitation 0.1 30 < th dose dependent rect. 22 1
351 63.21 precipitation 0.1 30 < th dose dependent rect. 2 3
353 63.21 radiation 1.0 30 < th dose dependent rect. 2 12
355 63.22 wind 7.0 30 < th dose independent rect. 22 1
357 63.22 temperature 10.0 30 > th dose independent rect. 22 1
359 63.22 temperature 30.0 30 < th dose independent rect. 22 1
360 63.22 humidity 50.0 30 > th dose independent rect. 22 1
363 63.22 atmosphere 995.0 30 > th dose independent rect. 22 1
364 63.22 atmosphere 1010.0 30 < th dose independent rect. 22 1
366 63.22 radiation 1.0 30 < th dose independent rect. 22 1
372 63.22 temperature 10.0 30 > th dose independent rect. 23 23
373 63.22 radiation 1.0 30 < th dose dependent rect. 22 1
380 63.23 wind 9.0 30 < th dose dependent rect. 22 1
382 63.24 temperature 10.0 30 > th dose independent rect. 2 3
384 63.24 temperature 30.0 30 < th dose independent rect. 2 3
385 63.24 humidity 50.0 30 > th dose independent rect. 2 3
389 63.24 atmosphere 1010.0 30 < th dose independent rect. 2 3
391 63.24 radiation 1.0 30 < th dose independent rect. 2 3
397 63.24 temperature 10.0 30 > th dose independent rect. 5 21
399 63.24 radiation 20.0 30 < th dose dependent rect. 2 3
421 63.25 precipitation 0.1 30 < th dose independent rect. 5 21
433 63.25 precipitation 0.1 30 < th dose dependent rect. 5 21
458 63.27 wind 1.0 30 > th dose dependent rect. 22 1
459 63.27 humidity 50.0 30 > th dose dependent rect. 22 1
469 63.28 wind 9.0 30 < th dose independent rect. 5 21
486 63.32 radiation 1.0 30 < th dose dependent rect. 2 6
493 63.33 radiation 1.0 10 < th dose independent rect. 2 6
503 63.35 atmosphere 1015.0 30 < th dose dependent rect. 22 1
507 63.36 humidity 50.0 30 > th dose independent rect. 5 21
534 63.44 temperature 30.0 30 < th dose dependent rect. 22 1
538 63.45 wind 9.0 1440 < th dose independent rect. 3 3
539 63.45 temperature 10.0 1440 > th dose independent rect. 3 3
542 63.45 temperature 30.0 1440 < th dose independent rect. 3 3
546 63.45 humidity 50.0 1440 > th dose independent rect. 3 3
555 63.45 atmosphere 995.0 1440 > th dose independent rect. 3 3
556 63.45 radiation 20.0 1440 < th dose independent rect. 3 3
566 63.45 temperature 10.0 1440 > th dose independent rect. 6 21
579 63.49 temperature 25.0 720 > th dose dependent rect. 5 3
581 63.50 humidity 90.0 90 < th dose independent rect. 2 1
588 63.54 radiation 1.0 90 < th dose dependent rect. 1 22
594 63.56 humidity 50.0 10 > th dose dependent rect. 2 3
612 63.65 wind 9.0 30 < th dose independent rect. 23 23
624 63.69 humidity 90.0 90 < th dose independent rect. 2 3
632 63.71 temperature 25.0 720 > th dose independent rect. 5 3
637 63.73 temperature 25.0 270 > th dose independent rect. 19 9
642 63.74 temperature 20.0 30 > th dose dependent rect. 20 9
677 63.77 radiation 1.0 30 < th dose dependent rect. 19 23
682 63.79 atmosphere 1000.0 10 > th dose independent rect. 16 10
684 63.79 wind 1.0 10 > th dose independent rect. 5 23
694 63.83 atmosphere 1000.0 10 > th dose independent rect. 14 12
696 63.84 radiation 1.0 90 < th dose independent rect. 1 22
702 63.86 temperature 30.0 30 < th dose independent rect. 5 21
713 63.87 radiation 1.0 90 < th dose dependent rect. 6 23
720 63.89 wind 1.0 30 > th dose independent rect. 5 21
732 63.91 radiation 40.0 30 < th dose independent rect. 14 12
733 63.91 wind 9.0 720 < th dose dependent rect. 2 1
739 63.93 temperature 25.0 720 > th dose independent rect. 6 1
742 63.93 radiation 1.0 30 < th dose independent rect. 19 23
745 63.93 temperature 10.0 30 > th dose dependent rect. 5 21
755 63.95 radiation 1.0 90 < th dose dependent rect. 9 20
758 63.96 humidity 60.0 10 > th dose independent rect. 14 12
774 63.98 radiation 1.0 90 < th dose dependent rect. 12 17
776 63.98 radiation 1.0 30 < th dose dependent rect. 2 19
778 63.98 atmosphere 995.0 30 > th dose dependent rect. 5 21
785 64.00 radiation 10.0 10 < th dose independent rect. 5 21
797 64.01 radiation 1.0 90 < th dose dependent rect. 17 23
798 64.02 precipitation 0.1 720 < th dose independent rect. 15 8
800 64.02 precipitation 0.1 10 < th dose independent rect. 2 14
802 64.02 precipitation 0.1 720 < th dose dependent rect. 15 8
803 64.02 radiation 40.0 10 < th dose dependent rect. 16 10
804 64.02 precipitation 0.1 10 < th dose dependent rect. 2 14
806 64.03 radiation 10.0 10 < th dose independent rect. 16 10
807 64.03 radiation 30.0 10 < th dose independent rect. 16 10
810 64.03 radiation 1.0 90 < th dose independent rect. 7 22
815 64.04 wind 9.0 10 < th dose independent rect. 16 10
823 64.04 temperature 10.0 90 > th dose dependent rect. 19 10
828 64.05 temperature 10.0 720 > th dose independent rect. 15 8
829 64.05 temperature 10.0 10 > th dose independent rect. 16 10
830 64.05 humidity 50.0 10 > th dose independent rect. 16 10
833 64.05 temperature 10.0 10 > th dose independent rect. 2 14
835 64.05 atmosphere 1015.0 10 < th dose independent rect. 2 14
836 64.05 temperature 10.0 720 > th dose independent rect. 23 16
837 64.05 atmosphere 995.0 720 > th dose independent rect. 23 16
843 64.05 radiation 40.0 10 < th dose dependent rect. 14 12
848 64.06 precipitation 0.1 10 < th dose independent rect. 16 10
854 64.06 precipitation 0.1 10 < th dose dependent rect. 16 10
856 64.07 atmosphere 995.0 720 > th dose independent rect. 14 1
867 64.08 radiation 1.0 90 < th dose dependent no NA NA
874 64.08 atmosphere 995.0 30 > th dose dependent rect. 5 14
875 64.08 radiation 1.0 90 < th dose dependent rect. 12 23
891 64.10 precipitation 0.1 10 < th dose independent rect. 2 12
892 64.10 atmosphere 995.0 10 > th dose independent rect. 2 14
894 64.10 atmosphere 1015.0 30 < th dose independent rect. 5 21
902 64.10 precipitation 0.1 10 < th dose dependent rect. 2 12
904 64.11 humidity 90.0 10 < th dose independent rect. 3 2
911 64.11 wind 1.0 10 > th dose independent rect. 21 23
941 64.12 temperature 10.0 10 > th dose independent rect. 2 12
943 64.12 temperature 10.0 10 > th dose independent rect. 14 12
945 64.12 atmosphere 995.0 10 > th dose independent rect. 2 12
946 64.12 atmosphere 1015.0 10 < th dose independent rect. 2 12
955 64.12 radiation 1.0 90 < th dose dependent rect. 12 20
961 64.12 radiation 1.0 90 < th dose dependent rect. 15 23
963 64.13 wind 9.0 10 < th dose independent rect. 14 12
965 64.13 radiation 1.0 90 < th dose independent rect. 12 17
967 64.13 radiation 1.0 30 < th dose independent rect. 2 19
975 64.14 temperature 10.0 720 > th dose independent rect. 3 8
976 64.14 atmosphere 995.0 720 > th dose independent rect. 3 8
981 64.14 precipitation 0.1 10 < th dose independent rect. 14 12
985 64.14 temperature 10.0 720 > th dose independent rect. 11 16
988 64.14 precipitation 0.1 10 < th dose dependent rect. 14 12
994 64.15 temperature 10.0 1440 > th dose independent rect. 17 10
997 64.15 radiation 30.0 1440 < th dose independent rect. 17 10