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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0552700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Tumor-related protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.28 (0.0838) R2 : 0.805
β1 : -11 (0.342) R2dD : 0.6 R2D : 0.57
β2 : 1.97 (0.221) R2dC : 0.0296 R2C : 0.0086
β3 : 0.142 (0.312) R2dE : 3.69e-05 R2E : -0.0196
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 14.8 (2.09) R2dD*E : 0.0344 R2D*E : 0.119
γ1 : -3.02 (0.178) R2dN8 : 0.176 R2N8 : 0.0237
σ : 1.53
deviance : 1075.69
__
_____
C
peak time of C : 5.96
E
wheather : humidity
threshold : 70.17
memory length : 717
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18.6
open length of G : 12.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1078.48 1.54 7.29 -11 1.8 0.177 -1.22 14.1 -3.05 5.87 69.01 713 18.6 12.4
1154.98 1.58 7.37 -11.7 1.78 1.76 -0.954 -- -2.91 5.73 72.17 2314 18.6 12.5
1075.69 1.53 7.28 -11 1.97 0.142 -- 14.8 -3.02 5.96 70.17 717 18.6 12.4
1150.33 1.58 7.37 -12 1.87 1.8 -- -- -2.95 6.03 72 2309 18.6 11.7
1216.37 1.62 7.28 -10.7 -- 0.485 -- 17 -2.95 -- 70.34 789 18.8 12
1239.97 1.65 7.44 -12 2.17 -- -0.101 -- -3.18 5.63 -- -- -- --
1240 1.65 7.44 -12 2.17 -- -- -- -3.18 5.62 -- -- -- --
1237.09 1.64 7.51 -11.6 -- 2.63 -- -- -3.08 -- 96 619 19.3 10.4
2040.05 2.1 6.94 -- 0.662 10 -- -- -1.08 8.56 64 47520 14.4 9.58
1484.64 1.8 7.47 -11.9 -- -- -- -- -3.13 -- -- -- -- --
5044.79 3.32 7.14 -- 1.98 -- -- -- -1.84 5.89 -- -- -- --
2063.28 2.12 7.01 -- -- 10.2 -- -- -1.11 -- 64.14 47520 14.5 6.65
5248.49 3.38 7.17 -- -- -- -- -- -1.8 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1089.03 humidity 70.0 720 < th dose independent rect. 18 13
2 1091.26 humidity 70.0 720 < th dose independent rect. 18 2
25 1101.53 humidity 80.0 43200 > th dose dependent rect. 20 2
30 1111.10 humidity 70.0 43200 > th dose dependent rect. 18 1
31 1111.32 humidity 70.0 720 < th dose dependent rect. 18 14
32 1111.44 humidity 80.0 720 < th dose dependent rect. 19 1
33 1111.68 humidity 70.0 720 > th dose independent rect. 19 8
34 1111.71 humidity 70.0 720 < th dose dependent rect. 19 12
38 1113.08 temperature 30.0 1440 > th dose dependent rect. 18 15
80 1118.98 temperature 30.0 720 > th dose dependent rect. 18 1
109 1120.12 wind 1.0 4320 < th dose dependent rect. 18 1
110 1121.41 temperature 30.0 720 > th dose independent rect. 18 1
124 1121.51 humidity 80.0 43200 > th dose dependent rect. 5 4
126 1122.09 precipitation 0.1 14400 > th dose dependent rect. 17 6
130 1124.09 humidity 70.0 43200 > th dose dependent rect. 17 3
135 1125.24 wind 1.0 4320 < th dose independent rect. 9 2
136 1125.28 humidity 80.0 43200 > th dose dependent rect. 4 6
151 1127.63 precipitation 0.1 14400 > th dose independent rect. 17 6
152 1127.65 precipitation 0.1 14400 < th dose independent rect. 17 6
153 1127.65 precipitation 0.1 14400 < th dose dependent rect. 17 6
157 1127.97 wind 1.0 4320 > th dose independent rect. 9 2
158 1127.99 precipitation 0.1 14400 > th dose dependent rect. 11 12
159 1128.00 precipitation 0.1 14400 > th dose dependent rect. 8 15
162 1128.18 humidity 90.0 720 > th dose independent rect. 22 1
178 1128.87 humidity 70.0 720 > th dose independent rect. 17 16
192 1129.51 humidity 70.0 43200 > th dose dependent rect. 5 8
197 1129.99 precipitation 0.1 14400 > th dose dependent rect. 19 3
199 1130.14 wind 1.0 4320 < th dose independent rect. 18 1
209 1130.41 precipitation 0.1 14400 > th dose dependent sin 17 NA
210 1130.42 humidity 90.0 43200 < th dose independent rect. 4 4
247 1131.37 humidity 80.0 43200 < th dose independent rect. 15 6
252 1131.67 temperature 30.0 43200 < th dose independent rect. 21 12
256 1131.86 temperature 30.0 43200 < th dose independent rect. 24 9
265 1132.09 humidity 80.0 43200 > th dose independent rect. 16 5
269 1132.47 wind 7.0 43200 < th dose independent rect. 18 3
271 1132.60 wind 1.0 4320 > th dose independent rect. 4 1
276 1132.77 temperature 30.0 43200 < th dose independent rect. 2 7
280 1132.90 temperature 30.0 43200 < th dose independent rect. 5 4
283 1133.02 humidity 70.0 43200 > th dose dependent rect. 4 17
303 1133.21 temperature 30.0 43200 < th dose independent rect. 8 1
315 1133.44 wind 1.0 4320 > th dose independent rect. 18 1
317 1133.50 temperature 30.0 43200 > th dose independent rect. 8 1
333 1133.58 temperature 30.0 43200 > th dose dependent rect. 8 2
358 1134.02 humidity 80.0 43200 < th dose independent rect. 13 9
359 1134.03 humidity 80.0 43200 > th dose independent rect. 18 2
365 1134.15 humidity 80.0 43200 < th dose independent rect. 18 2
372 1134.56 precipitation 0.1 14400 < th dose independent rect. 11 12
373 1134.56 precipitation 0.1 14400 < th dose dependent rect. 11 12
375 1134.65 precipitation 0.1 14400 > th dose independent rect. 11 12
377 1134.82 precipitation 0.1 14400 > th dose independent rect. 8 15
378 1134.83 humidity 70.0 720 < th dose independent sin 11 NA
386 1134.97 precipitation 0.1 14400 < th dose independent rect. 8 15
387 1134.97 precipitation 0.1 14400 < th dose dependent rect. 8 15
406 1135.08 wind 7.0 43200 > th dose independent rect. 18 3
411 1135.12 wind 1.0 43200 < th dose independent rect. 8 1
428 1135.23 wind 1.0 4320 < th dose independent rect. 3 2
435 1135.45 humidity 80.0 43200 > th dose independent rect. 13 9
481 1136.15 precipitation 0.1 14400 > th dose dependent rect. 20 22
520 1136.91 wind 1.0 4320 < th dose dependent rect. 9 2
571 1137.54 humidity 80.0 43200 < th dose independent rect. 8 14
589 1137.71 humidity 90.0 720 > th dose dependent rect. 21 3
593 1137.83 humidity 70.0 4320 > th dose independent rect. 18 2
596 1137.90 precipitation 0.1 14400 > th dose dependent rect. 17 16
599 1137.91 wind 7.0 43200 > th dose dependent rect. 15 18
602 1137.99 humidity 70.0 4320 > th dose independent rect. 18 4
604 1138.00 humidity 70.0 4320 > th dose independent rect. 18 11
605 1138.01 humidity 70.0 4320 > th dose independent rect. 18 9
606 1138.01 humidity 80.0 43200 < th dose independent rect. 4 17
610 1138.03 humidity 80.0 43200 > th dose independent rect. 8 15
629 1138.12 precipitation 0.1 14400 > th dose dependent rect. 17 20
631 1138.18 humidity 70.0 4320 < th dose independent rect. 18 13
639 1138.24 humidity 70.0 4320 < th dose independent rect. 18 3
653 1138.29 radiation 1.0 43200 < th dose dependent rect. 19 5
660 1138.41 wind 5.0 43200 > th dose dependent rect. 18 3
662 1138.43 humidity 50.0 1440 < th dose independent rect. 16 18
673 1138.58 wind 7.0 43200 > th dose independent rect. 15 18
681 1138.68 humidity 50.0 1440 < th dose independent rect. 16 2
697 1138.69 humidity 80.0 43200 > th dose independent rect. 4 17
702 1138.72 humidity 50.0 1440 > th dose independent rect. 16 5
703 1138.72 wind 7.0 43200 < th dose independent rect. 15 18
725 1138.93 humidity 50.0 1440 > th dose independent rect. 16 10
755 1139.13 humidity 70.0 720 > th dose independent sin 12 NA
780 1139.49 temperature 25.0 720 > th dose dependent rect. 21 1
785 1139.52 humidity 50.0 1440 > th dose independent rect. 16 13
800 1139.72 temperature 30.0 43200 > th dose dependent rect. 18 1
819 1139.77 humidity 70.0 720 > th dose dependent rect. 20 1
830 1139.90 precipitation 0.1 14400 < th dose independent sin 18 NA
832 1139.90 precipitation 0.1 14400 < th dose dependent sin 18 NA
834 1139.91 precipitation 0.1 14400 > th dose independent sin 18 NA
859 1140.23 humidity 50.0 1440 > th dose independent rect. 16 16
868 1140.30 radiation 1.0 43200 > th dose independent rect. 4 2
885 1140.41 radiation 1.0 43200 < th dose independent rect. 21 9
886 1140.43 radiation 1.0 43200 < th dose independent rect. 24 6
899 1140.54 radiation 1.0 43200 < th dose independent rect. 2 4
903 1140.56 temperature 25.0 720 > th dose dependent rect. 20 3
906 1140.60 radiation 1.0 43200 < th dose independent rect. 4 2
912 1140.65 precipitation 0.1 14400 > th dose dependent rect. 11 22
930 1140.87 humidity 90.0 43200 < th dose independent rect. 6 1
957 1141.28 temperature 25.0 43200 > th dose dependent rect. 3 1
990 1141.47 precipitation 0.1 14400 > th dose dependent no NA NA